CmaCh01G009090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G009090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein PSY3
Location	Cma_Chr01: 5471173 .. 5471716 (-)
RNA-Seq Expression	CmaCh01G009090
Synteny	CmaCh01G009090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTAAAGCTCGTCTTTGCCTCTTCCTTTTGCTCTCGTTCACCCTCATCAGCTCAGCTCGAATTGTGCCTCATCCAGGTACACAAATCATTACCAATTCAAATAATTTAGATTCATGTAGCTTGTGCGCTTTTAATAGGATGCAATTTTTAAGTCGTTCGTTCTTTATAAACCAAAGCATCTCATGTAATAATTGAAATTTCAGAAGAACAAGCAACAACGGTTGTGATAAATGACTATGCTGAACCAGGAGCTAATAACAGACATGATCCAAGGCTTCCACCACCAGAGTTTAACGCTTTTACCGTTGCCGATGACGAGAGCAATAAGAAACCCTACACAAATTTGTTTATTGGAAGACAACTTGTTGGCAGAAGCATCAACAAGGAAACGTAAACAAAGAGCTAATGATGTGCCAAAGTAATAATAGTACTAAAAATATTATATTATTGATGTAAATTATGGAATAATATGTTATCAAATTAATGTAATGAAGAAAATAGTATGGTACTAAACCAAAATATCTATTAAATTTTTTTG

mRNA sequence

ATGGAGTTTAAAGCTCGTCTTTGCCTCTTCCTTTTGCTCTCGTTCACCCTCATCAGCTCAGCTCGAATTGTGCCTCATCCAGAAGAACAAGCAACAACGGTTGTGATAAATGACTATGCTGAACCAGGAGCTAATAACAGACATGATCCAAGGCTTCCACCACCAGAGTTTAACGCTTTTACCGTTGCCGATGACGAGAGCAATAAGAAACCCTACACAAATTTGTTTATTGGAAGACAACTTGTTGGCAGAAGCATCAACAAGGAAACGTAAACAAAGAGCTAATGATGTGCCAAAGTAATAATAGTACTAAAAATATTATATTATTGATGTAAATTATGGAATAATATGTTATCAAATTAATGTAATGAAGAAAATAGTATGGTACTAAACCAAAATATCTATTAAATTTTTTTG

Coding sequence (CDS)

ATGGAGTTTAAAGCTCGTCTTTGCCTCTTCCTTTTGCTCTCGTTCACCCTCATCAGCTCAGCTCGAATTGTGCCTCATCCAGAAGAACAAGCAACAACGGTTGTGATAAATGACTATGCTGAACCAGGAGCTAATAACAGACATGATCCAAGGCTTCCACCACCAGAGTTTAACGCTTTTACCGTTGCCGATGACGAGAGCAATAAGAAACCCTACACAAATTTGTTTATTGGAAGACAACTTGTTGGCAGAAGCATCAACAAGGAAACGTAA

Protein sequence

MEFKARLCLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPPEFNAFTVADDESNKKPYTNLFIGRQLVGRSINKET

Homology

[Close]

BLAST of CmaCh01G009090 vs. ExPASy Swiss-Prot
Match: Q8S8P7 (Protein PSY3 OS=Arabidopsis thaliana OX=3702 GN=PSY3 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.0e-04
Identity = 26/52 (50.00%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 7  LCLFLLLSFTLISSARIVPHPEEQATTVV--------INDYAEPGANNRHDP 51
          LCLFL  +F L+SSARI     E   TVV         NDY++P AN RHDP
Sbjct: 11 LCLFLFFTFALLSSARISLSFSENEMTVVPERSLMVSTNDYSDPTANGRHDP 62

[Close]

BLAST of CmaCh01G009090 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.8e-11
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 3  FKARL-CLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPP-EFNAF 62
          FKARL  LFLLLSF L++SARI+PH E Q    +INDY +PGAN RHDP  PPP +F   
Sbjct: 4  FKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPPPQQFEIS 63

Query: 63 TVADDESNKKP 72
           V D +  K P
Sbjct: 64 VVKDHDIKKNP 74

[Close]

BLAST of CmaCh01G009090 vs. ExPASy TrEMBL
Match: A0A0A0M0T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 4  KARLCLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPPEFNAFTV 63
          KARL LFLLLSF L +SARI+PH E Q  T ++NDY++PGAN RHDP  PPP  ++F V
Sbjct: 5  KARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDP-FPPPLEHSFEV 62

[Close]

BLAST of CmaCh01G009090 vs. ExPASy TrEMBL
Match: A0A0A0LV67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-10
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 4  KARLCLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPPE--FNAFT 63
          KARL L LLLSF L++SARI+PH E Q    +INDY +PGAN RH+P  PPP   F    
Sbjct: 5  KARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLFEISV 64

Query: 64 VADDESNKKP 72
          V D +  K P
Sbjct: 65 VKDGDITKNP 74

[Close]

BLAST of CmaCh01G009090 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 4  KARLCLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPPEFNAFTVA 63
          KARL LFLLLSF L++SARI+PH E Q    +INDY +PGAN RHDP  PP +    +V 
Sbjct: 5  KARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPPSQQFEVSVV 64

Query: 64 DDESNKK 71
               KK
Sbjct: 65 KGHRIKK 71

[Close]

BLAST of CmaCh01G009090 vs. ExPASy TrEMBL
Match: A0A5D3BBU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00970 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.2e-09
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 4  KARLCLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPP-EFNAFTV 63
          K RL L LLLSF +++ ARI+PH E Q     INDY +PGAN RHDP  PPP +F    V
Sbjct: 5  KTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFEVSVV 64

Query: 64 ADDESNKKP 72
                K P
Sbjct: 65 KVQHIRKNP 73

[Close]

BLAST of CmaCh01G009090 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 9.1e-11
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 3  FKARLCLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPPEFNAFTV 62
          FKARL  FLLLSF LI+ ARI PH E Q  T+ INDYA+PGAN RHDP  PP   N +  
Sbjct: 4  FKARLTFFLLLSFALITLARITPHSESQNNTITINDYADPGANPRHDPNQPPMMINDY-- 63

Query: 63 ADDESNKK 71
          AD  +N +
Sbjct: 64 ADPGANPR 69

[Close]

BLAST of CmaCh01G009090 vs. NCBI nr
Match: KAA0031838.1 (hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 3  FKARL-CLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPP-EFNAF 62
          FKARL  LFLLLSF L++SARI+PH E Q    +INDY +PGAN RHDP  PPP +F   
Sbjct: 4  FKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPPPQQFEIS 63

Query: 63 TVADDESNKKP 72
           V D +  K P
Sbjct: 64 VVKDHDIKKNP 74

[Close]

BLAST of CmaCh01G009090 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_023196 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.6e-10
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 4  KARLCLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPPEFNAFTV 63
          KARL LFLLLSF L +SARI+PH E Q  T ++NDY++PGAN RHDP  PPP  ++F V
Sbjct: 5  KARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDP-FPPPLEHSFEV 62

[Close]

BLAST of CmaCh01G009090 vs. NCBI nr
Match: KAG6607579.1 (hypothetical protein SDJN03_00921, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 40/73 (54.79%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 1  MEFKARLCLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLP--PPEFN 60
          MEFKARLCLFLLLSF L+SSAR + H  +Q T  V+ DY +PG      P  P  PP F 
Sbjct: 1  MEFKARLCLFLLLSFALVSSARTISHSGKQRTKEVMRDYDDPGRVPGWSPLYPPEPPHFK 60

Query: 61 AFTVADDESNKKP 72
           F V DD  N KP
Sbjct: 61 VFAVYDDHINIKP 73

[Close]

BLAST of CmaCh01G009090 vs. NCBI nr
Match: KAA0031836.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 4  KARLCLFLLLSFTLISSARIVPHPEEQATTVVINDYAEPGANNRHDPRLPPPEFNAFTVA 63
          KARL LFLLLSF L++SARI+PH E Q    +INDY +PGAN RHDP  PP +    +V 
Sbjct: 5  KARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPPSQQFEVSVV 64

Query: 64 DDESNKK 71
               KK
Sbjct: 65 KGHRIKK 71

[Close]

BLAST of CmaCh01G009090 vs. TAIR 10
Match: AT2G29995.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07175.1); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.6e-05
Identity = 26/52 (50.00%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 7  LCLFLLLSFTLISSARIVPHPEEQATTVV--------INDYAEPGANNRHDP 51
          LCLFL  +F L+SSARI     E   TVV         NDY++P AN RHDP
Sbjct: 11 LCLFLFFTFALLSSARISLSFSENEMTVVPERSLMVSTNDYSDPTANGRHDP 62

The following BLAST results are available for this feature:

BLAST of CmaCh01G009090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8P7	5.0e-04	50.00	Protein PSY3 OS=Arabidopsis thaliana OX=3702 GN=PSY3 PE=3 SV=1	[more]

BLAST of CmaCh01G009090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH7	5.8e-11	57.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0M0T8	1.3e-10	62.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1	[more]
A0A0A0LV67	2.9e-10	54.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1	[more]
A0A5A7SPC6	6.4e-10	55.22	Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P...	[more]
A0A5D3BBU7	9.2e-09	50.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmaCh01G009090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895781.1	9.1e-11	58.82	circumsporozoite protein-like [Benincasa hispida]	[more]
KAA0031838.1	1.2e-10	57.75	hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa]	[more]
KGN65816.1	2.6e-10	62.71	hypothetical protein Csa_023196 [Cucumis sativus]	[more]
KAG6607579.1	1.0e-09	54.79	hypothetical protein SDJN03_00921, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0031836.1	1.3e-09	55.22	Protein PSY3 [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh01G009090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29995.1	3.6e-05	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G009090.1	CmaCh01G009090.1	mRNA