CmaCh01G008960 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G008960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRibulose bisphosphate carboxylase large chain
LocationCma_Chr01: 5205900 .. 5206156 (+)
RNA-Seq ExpressionCmaCh01G008960
SyntenyCmaCh01G008960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAATTCTCGACCATTTATGTGTTGGAGAGCTCGTTCTCTATTTTGTTCAGAAGCCATTTATAAATCACAGGCTGACACAGGTGAAATCAAGGGACAATACTTGAATGCTACTGCGGAGACATGCGAAGAAATGATGAAAATTGCTATATTTGCTCGAGAATTTGGAGTTCCTATCGCAATGCATGACTACTAA

mRNA sequence

ATGGTGGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAAAGATGATGAAAACAGCTCGTTCTCTATTTTGTTCAGAAGCCATTTATAAATCACAGGCTGACACAGGTGAAATCAAGGGACAATACTTGAATGCTACTGCGGAGACATGCGAAGAAATGATGAAAATTGCTATATTTGCTCGAGAATTTGGAGTTCCTATCGCAATGCATGACTACTAA

Coding sequence (CDS)

ATGGTGGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAAAGATGATGAAAACAGCTCGTTCTCTATTTTGTTCAGAAGCCATTTATAAATCACAGGCTGACACAGGTGAAATCAAGGGACAATACTTGAATGCTACTGCGGAGACATGCGAAGAAATGATGAAAATTGCTATATTTGCTCGAGAATTTGGAGTTCCTATCGCAATGCATGACTACTAA

Protein sequence

MVEQFMNVYVVDLILPKMMKTARSLFCSEAIYKSQADTGEIKGQYLNATAETCEEMMKIAIFAREFGVPIAMHDY
Homology
[Close]
BLAST of CmaCh01G008960 vs. ExPASy Swiss-Prot
Match: P48686 (Ribulose bisphosphate carboxylase large chain OS=Brassica oleracea OX=3712 GN=rbcL PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-19
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 16  PKMMKTARSLFCSEAIYKSQADTGEIKGQYLNATAETCEEMMKIAIFAREFGVPIAMHDY 75
           P M    R LFC+EAIYKSQA+TGEIKG YLNATA TCEEMMK AIFARE GVPI MHDY
Sbjct: 210 PFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDY 269

[Close]
BLAST of CmaCh01G008960 vs. ExPASy Swiss-Prot
Match: P28395 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crassula marnierana OX=45093 GN=rbcL PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-19
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 16  PKMMKTARSLFCSEAIYKSQADTGEIKGQYLNATAETCEEMMKIAIFAREFGVPIAMHDY 75
           P M    R LFC+EAIYKSQA+TGEIKG YLNATA TCEEMMK AIFARE GVPI MHDY
Sbjct: 200 PFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDY 259

[Close]
BLAST of CmaCh01G008960 vs. ExPASy Swiss-Prot
Match: P28260 (Ribulose bisphosphate carboxylase large chain OS=Ipomoea purpurea OX=4121 GN=rbcL PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-19
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 16  PKMMKTARSLFCSEAIYKSQADTGEIKGQYLNATAETCEEMMKIAIFAREFGVPIAMHDY 75
           P M    R LFC+EAIYKSQA+TGEIKG YLNATA TCEEMMK AIFARE GVPI MHDY
Sbjct: 210 PFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDY 269

[Close]
BLAST of CmaCh01G008960 vs. ExPASy Swiss-Prot
Match: P28433 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Nelsonia canescens OX=4193 GN=rbcL PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-19
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 16  PKMMKTARSLFCSEAIYKSQADTGEIKGQYLNATAETCEEMMKIAIFAREFGVPIAMHDY 75
           P M    R LFC+EAIYKSQA+TGEIKG YLNATA TCEEMMK AIFARE GVPI MHDY
Sbjct: 200 PFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDY 259

[Close]
BLAST of CmaCh01G008960 vs. ExPASy Swiss-Prot
Match: B0Z4K9 (Ribulose bisphosphate carboxylase large chain OS=Oenothera argillicola OX=3940 GN=rbcL PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-19
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 16  PKMMKTARSLFCSEAIYKSQADTGEIKGQYLNATAETCEEMMKIAIFAREFGVPIAMHDY 75
           P M    R LFC+EAIYKSQA+TGEIKG YLNATA TCEEMMK AIFARE GVPI MHDY
Sbjct: 210 PFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDY 269

[Close]
BLAST of CmaCh01G008960 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 94.0 bits (232), Expect = 5.6e-20
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 16  PKMMKTARSLFCSEAIYKSQADTGEIKGQYLNATAETCEEMMKIAIFAREFGVPIAMHDY 75
           P M    R LFC+EAIYKSQA+TGEIKG YLNATA TCEEM+K A+FARE GVPI MHDY
Sbjct: 210 PFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDY 269

[Close]
BLAST of CmaCh01G008960 vs. TAIR 10
Match: ATMG00280.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-18
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 16  PKMMKTARSLFCSEAIYKSQADTGEIKGQYLNATAETCEEMMKIAIFAREFGVPIAMHDY 75
           P M    R LFC+EA+YK+QA+TG IKG YLNATA TCEEM+K A+FARE GVPI MHDY
Sbjct: 42  PFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDY 101

[Close]
BLAST of CmaCh01G008960 vs. TAIR 10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 87.8 bits (216), Expect = 4.0e-18
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 16  PKMMKTARSLFCSEAIYKSQADTGEIKGQYLNATAETCEEMMKIAIFAREFGVPIAMHDY 75
           P M    R LFC+EA+YK+QA+TG IKG YLNAT  TCEEM+K A+FARE GVPI MHDY
Sbjct: 42  PFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNATPGTCEEMIKRAVFARELGVPIVMHDY 101

The following BLAST results are available for this feature:
BLAST of CmaCh01G008960 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P486862.1e-1978.33Ribulose bisphosphate carboxylase large chain OS=Brassica oleracea OX=3712 GN=rb... [more]
P283952.1e-1978.33Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crassula marnierana ... [more]
P282602.1e-1978.33Ribulose bisphosphate carboxylase large chain OS=Ipomoea purpurea OX=4121 GN=rbc... [more]
P284332.1e-1978.33Ribulose bisphosphate carboxylase large chain (Fragment) OS=Nelsonia canescens O... [more]
B0Z4K92.1e-1978.33Ribulose bisphosphate carboxylase large chain OS=Oenothera argillicola OX=3940 G... [more]
BLAST of CmaCh01G008960 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00490.15.6e-2075.00ribulose-bisphosphate carboxylases [more]
ATMG00280.11.1e-1870.00Ribulose bisphosphate carboxylase large chain, catalytic domain [more]
AT2G07732.14.0e-1868.33Ribulose bisphosphate carboxylase large chain, catalytic domain [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyGENE3D3.20.20.110coord: 15..75
e-value: 1.8E-11
score: 45.7
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilySUPERFAMILY51649RuBisCo, C-terminal domaincoord: 18..75
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalPFAMPF00016RuBisCO_largecoord: 22..74
e-value: 3.7E-9
score: 36.2
NoneNo IPR availablePANTHERPTHR47910RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN, CATALYTIC DOMAIN-CONTAINING PROTEINcoord: 16..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G008960.1CmaCh01G008960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
cellular_component GO:0009507 chloroplast
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity