CmaCh01G008550 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G008550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
Location	Cma_Chr01: 4813378 .. 4814136 (+)
RNA-Seq Expression	CmaCh01G008550
Synteny	CmaCh01G008550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATTTGTGAACAATGTGGATACCATTTGAAAATGAGTAGTTCAGATAGAATCGAACTTTTGATTGATCCAGGTACTTGGGACCCTATGGATGAAGACATGGTCTCTTTGGATCCCATTGAATTTCATTCGGAGGAGGAACCTTATAAAGATCGTATTGATTCTTATCAAATAAAGACAGGATTAACTGAGGCTATTCAAACAGGCACAGGTAAATTAAACGGTATTCCCATAGCAATTGGGATTATGGATTTTCAGTTTATGGGGGTAGTATGGGATCTGTAGTAGGCGAGAAAATCACCCGTTTGATCGAGGTGGAAACCTTAAGAAACCTCAAGGAAAAATCCAAAAGGAAAAGCACAAATAGAACAATATATGCTAGTGGTCGACTTGAGTCTGGACCGTTTTCTTGTGATTTCCCTGGGGATAGACACGAGGTGATGTGCCGGATGCTGGCCCCAAAGGAGTGGAATGAGTGGGGGTCCCACATCCATTGAAAATTTTTCAAAGAATTTGGATCAAGTTGCTTTCTTAAGCCTTTACACGAGGGACTTGATTGTCCACTCTCTTTGAGATGAAAACTAGGTTCATTTTCTTTACTTTTCACGTTCTTCGTGGGGGATCATCTTTATCTCAATAGTCTCCGTCTTAATTTCGAATCCTTTTTCAATGTCTTTGCTCATTCTTTAGCATGATGTATAGGGCTCAAAAGCTAACTTTAGAGTTATGAAAAGAGCCGAAATTGGATTGCATTAG

mRNA sequence

ATGAATATTTGTGAACAATGTGGATACCATTTGAAAATGAGTACTTGGGACCCTATGGATGAAGACATGGTCTCTTTGGATCCCATTGAATTTCATTCGGAGGAGGAACCTTATAAAGATCGTATTGATTCTTATCAAATAAAGACAGGATTAACTGAGGCTATTCAAACAGGCACAGGTAAATTAAACGGTATTCCCATAGCAATTGGGATTATGGATTTTCAGTTTATGGGGGTAGGCTCAAAAGCTAACTTTAGAGTTATGAAAAGAGCCGAAATTGGATTGCATTAG

Coding sequence (CDS)

ATGAATATTTGTGAACAATGTGGATACCATTTGAAAATGAGTACTTGGGACCCTATGGATGAAGACATGGTCTCTTTGGATCCCATTGAATTTCATTCGGAGGAGGAACCTTATAAAGATCGTATTGATTCTTATCAAATAAAGACAGGATTAACTGAGGCTATTCAAACAGGCACAGGTAAATTAAACGGTATTCCCATAGCAATTGGGATTATGGATTTTCAGTTTATGGGGGTAGGCTCAAAAGCTAACTTTAGAGTTATGAAAAGAGCCGAAATTGGATTGCATTAG

Protein sequence

MNICEQCGYHLKMSTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQIKTGLTEAIQTGTGKLNGIPIAIGIMDFQFMGVGSKANFRVMKRAEIGLH

Homology

[Close]

BLAST of CmaCh01G008550 vs. ExPASy Swiss-Prot
Match: Q49KY9 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=accD PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-36
Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MNICEQCGYHLKMS------------TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQIK 60
           MNIC+QCGYHLKMS            TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQ K
Sbjct: 248 MNICDQCGYHLKMSSSDRIELSIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRK 307

Query: 61  TGLTEAIQTGTGKLNGIPIAIGIMDFQFMG--VGSKANFRVMKRAE 93
           TGLT+A+QTGTG+LNGIPIAIG+MDFQFMG  +GS    ++ +  E
Sbjct: 308 TGLTDAVQTGTGRLNGIPIAIGVMDFQFMGGSMGSVVGEKITRLIE 353

[Close]

BLAST of CmaCh01G008550 vs. ExPASy Swiss-Prot
Match: Q8S8W7 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Atropa belladonna OX=33113 GN=accD PE=3 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36
Identity = 75/106 (70.75%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MNICEQCGYHLKMS------------TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQIK 60
           MNICEQCGYHLKMS            TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQ K
Sbjct: 238 MNICEQCGYHLKMSSSDRIELLIDAGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRK 297

Query: 61  TGLTEAIQTGTGKLNGIPIAIGIMDFQFMG--VGSKANFRVMKRAE 93
           TGLTEA+QTG G+LNGIP+AIG+MDFQFMG  +GS    ++ +  E
Sbjct: 298 TGLTEAVQTGIGQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIE 343

[Close]

BLAST of CmaCh01G008550 vs. ExPASy Swiss-Prot
Match: Q3C1J3 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=accD PE=3 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36
Identity = 75/106 (70.75%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MNICEQCGYHLKMS------------TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQIK 60
           MNICEQCGYHLKMS            TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQ K
Sbjct: 246 MNICEQCGYHLKMSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRK 305

Query: 61  TGLTEAIQTGTGKLNGIPIAIGIMDFQFMG--VGSKANFRVMKRAE 93
           TGLTEA+QTG G+LNGIP+AIG+MDFQFMG  +GS    ++ +  E
Sbjct: 306 TGLTEAVQTGIGQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIE 351

[Close]

BLAST of CmaCh01G008550 vs. ExPASy Swiss-Prot
Match: Q33C25 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN=accD PE=3 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36
Identity = 78/109 (71.56%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MNICEQCGYHLKMS------------TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQIK 60
           MNICEQCGYHLKMS            TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQ K
Sbjct: 246 MNICEQCGYHLKMSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRK 305

Query: 61  TGLTEAIQTGTGKLNGIPIAIGIMDFQFMG------VGSKANFRVMKRA 92
           TGLTEA+QTG G+LNGIP+AIG+MDFQFMG      VG K   R+++RA
Sbjct: 306 TGLTEAVQTGIGQLNGIPVAIGVMDFQFMGGSMGSVVGEKIT-RLIERA 353

[Close]

BLAST of CmaCh01G008550 vs. ExPASy Swiss-Prot
Match: Q2MIH8 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=accD PE=3 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36
Identity = 75/106 (70.75%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MNICEQCGYHLKMS------------TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQIK 60
           MNICEQCGYHLKMS            TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQ K
Sbjct: 241 MNICEQCGYHLKMSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRK 300

Query: 61  TGLTEAIQTGTGKLNGIPIAIGIMDFQFMG--VGSKANFRVMKRAE 93
           TGLTEA+QTG G+LNGIP+AIG+MDFQFMG  +GS    ++ +  E
Sbjct: 301 TGLTEAVQTGIGQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIE 346

[Close]

BLAST of CmaCh01G008550 vs. TAIR 10
Match: ATCG00500.1 (acetyl-CoA carboxylase carboxyl transferase subunit beta )

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-31
Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MNICEQCGYHLKMS------------TWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQIK 60
           MN+CEQCG++LKMS            TW+PMDEDMVS DPI+FHS+EEPYK+RIDS Q  
Sbjct: 244 MNVCEQCGHYLKMSSSERIELSIDPGTWNPMDEDMVSADPIKFHSKEEPYKNRIDSAQKT 303

Query: 61  TGLTEAIQTGTGKLNGIPIAIGIMDFQFMG--VGSKANFRVMKRAE 93
           TGLT+A+QTGTG+LNGIP+A+G+MDF+FMG  +GS    ++ +  E
Sbjct: 304 TGLTDAVQTGTGQLNGIPVALGVMDFRFMGGSMGSVVGEKITRLIE 349

The following BLAST results are available for this feature:

BLAST of CmaCh01G008550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KY9	1.4e-36	70.75	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O...	[more]
Q8S8W7	2.4e-36	70.75	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O...	[more]
Q3C1J3	2.4e-36	70.75	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O...	[more]
Q33C25	2.4e-36	71.56	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O...	[more]
Q2MIH8	2.4e-36	70.75	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O...	[more]

BLAST of CmaCh01G008550 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00500.1	2.4e-31	59.43	acetyl-CoA carboxylase carboxyl transferase subunit beta	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.226.10		coord: 1..91 e-value: 7.7E-18 score: 66.9
None	No IPR available	PANTHER	PTHR42995	FAMILY NOT NAMED	coord: 1..78
IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal	PROSITE	PS50980	COA_CT_NTER	coord: 1..96 score: 12.879145
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 3..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G008550.1	CmaCh01G008550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:2001295	malonyl-CoA biosynthetic process
cellular_component	GO:0009317	acetyl-CoA carboxylase complex
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016743	carboxyl- or carbamoyltransferase activity
molecular_function	GO:0008270	zinc ion binding