CmaCh01G008420 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G008420
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LysM domain-containing protein
Location	Cma_Chr01: 4630200 .. 4632227 (+)
RNA-Seq Expression	CmaCh01G008420
Synteny	CmaCh01G008420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATTCAATTTTCTCCACTTTATGTAATTACACTAAAAGGGAAAAGGAAAACAAAAATGTCATCAGAAAATAGGCAATGGGCAATAGGCAATAGGCATGGCGAAATTTGAAGGGTTTGTGCGATGGAAGTGAAGGTCGGGCAGAGAAATGGAGTAGACCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGGTATTTCGCCATTCCCTTATCTCACAACCCATCATCGACACCCTTTTCTTTCTTTTTCTGAGAAATCTTACACAACTTGCTTCGCTTTTCTCCTTTTCCCTCCAATAGAAATTGGGCCAACGCCAAAACATCCTTGAAGAATCACTTCAGAGCCATTGCGCTGGTATGTTTCTCTCCATTCAATATCGTGCTTTTGGTTCTAATTACTCCATCCCCATGTTAGAATTGTTTCTATTACTTTTGGAATTGAATGCTTTTTCCAACCTTAACACTAACATTGGTTGCTATAGGCTAAATTGTACTGCAAACTAATTACTGAATGTTCAGATCCTCAAAAATTTCAAACCCCATATGAATTTCATCTCAGTTTCCATGAGTTGGGTTCATAATTTCTAAATTCGGTGATGAAAGTATTGGTATTACTTGAAGAATTGACAAACTCGCTTAACTTTTTGTTGATTCATTGCGTTCGTGAGCTACATGTAAGAGGAATTTTTGTATATATGGTTATGTCTTACATAATCACTGCAGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATGAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGTAAGTTTCTTTTTCTCACCAGATGCAGAGCTATATCCAATCTACACATATTTATACCATCTTATCTGTTCTCTCTTCGTTTTTCTTTGTCAGGCTAGAACCACTAGTTTGATAGTTTTGGTTCCCCTTATAGTATTTTGTGCCAATTGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCCGTTAAGGAACCAGAGGGAGAACGTCACAACTTCAGAAACGGCCATTGGAGATCTGCTCTTCGAGAGATAAGGGAATTGGATGGTTTGGATTCTGAGTCCTCCATATATTCTACTGTAAGTAATGTAACTTTTTGCTCCTACTCTTACTGTAAGGAATGGTTTTACTTGCAATGTGAAACGGGAGGAAAATTGATAACTGATAGAGTTGTTGAATTGTTGCTTTCATTTCTTTGAGTACCCAACTCCCCAAGGCTTTTCCAGCTGATCATTCATTGTTTTCTATTCCTAATGGAGTTCACTGGCCATCCACTTCGCTTTCTTCTTGTTTGCCCATCTTTTTGTTCCAATCAGTGTATAATGCTGCCAAAATGGCAAACTATCTTCAGATAACAACATTGGATCTGCACATGGGTGGGGTGAACAAGAAAAGGAACAATGCAGAAATATGTTACTAAGAGTGCTTAAATGAACTTCATAAATTATAAAAATACATCATATGTCGAAATCATTATAGAAAATATGCTTGATGATTTCAAAACAATACCCTTAAAAATCATTCTATACTCATTGTAGTTTTTCTTTTGCAGAGGCCTTCAGAAGAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGAGTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATCGGGCTACTGGCGAGGAGGTGCGCAGAGACCTGGACAGGAATAGGCAATCTTTGTAGCACTTTTCCGTGCTCCCTTGCCATCCAAAAGGGGCTAGGCTAGGGAGTTCTCTGTAGCAACCATTTTTCAGGTGTTGTATTGTAGTGGAGTAAAAATTTCAACCCAGTAATGTAATTAAACTTTAAATTGGACAAAATTTATGCATTCTGCATCCAATTTGCATTAACTCTTAACAAAGAACGTGCATGACCGGAGTCTCGCCGGGATTCTTAGTCACTTTGAGCTTTGCATCGGC

mRNA sequence

GGATTCAATTTTCTCCACTTTATGTAATTACACTAAAAGGGAAAAGGAAAACAAAAATGTCATCAGAAAATAGGCAATGGGCAATAGGCAATAGGCATGGCGAAATTTGAAGGGTTTGTGCGATGGAAGTGAAGGTCGGGCAGAGAAATGGAGTAGACCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAACATCCTTGAAGAATCACTTCAGAGCCATTGCGCTGGCTAAATTGTACTGCAAACTAATTACTGAATGTTCAGATCCTCAAAAATTTCAAACCCCATATGAATTTCATCTCAGTTTCCATGAGTTGGAATTGACAAACTCGCTTAACTTTTTGTTGATTCATTGCGTTCGTGAGCTACATTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATGAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGCTAGAACCACTAGTTTGATAGTTTTGGTTCCCCTTATAGTATTTTGTGCCAATTGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCCGTTAAGGAACCAGAGGGAGAACGTCACAACTTCAGAAACGGCCATTGGAGATCTGCTCTTCGAGAGATAAGGGAATTGGATGGTTTGGATTCTGAGTCCTCCATATATTCTACTAGGCCTTCAGAAGAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGAGTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATCGGGCTACTGGCGAGGAGGTGCGCAGAGACCTGGACAGGAATAGGCAATCTTTGTAGCACTTTTCCGTGCTCCCTTGCCATCCAAAAGGGGCTAGGCTAGGGAGTTCTCTGTAGCAACCATTTTTCAGGTGTTGTATTGTAGTGGAGTAAAAATTTCAACCCAGTAATGTAATTAAACTTTAAATTGGACAAAATTTATGCATTCTGCATCCAATTTGCATTAACTCTTAACAAAGAACGTGCATGACCGGAGTCTCGCCGGGATTCTTAGTCACTTTGAGCTTTGCATCGGC

Coding sequence (CDS)

ATGGAAGTGAAGGTCGGGCAGAGAAATGGAGTAGACCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAACATCCTTGAAGAATCACTTCAGAGCCATTGCGCTGGCTAAATTGTACTGCAAACTAATTACTGAATGTTCAGATCCTCAAAAATTTCAAACCCCATATGAATTTCATCTCAGTTTCCATGAGTTGGAATTGACAAACTCGCTTAACTTTTTGTTGATTCATTGCGTTCGTGAGCTACATTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATGAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGCTAGAACCACTAGTTTGATAGTTTTGGTTCCCCTTATAGTATTTTGTGCCAATTGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCCGTTAAGGAACCAGAGGGAGAACGTCACAACTTCAGAAACGGCCATTGGAGATCTGCTCTTCGAGAGATAAGGGAATTGGATGGTTTGGATTCTGAGTCCTCCATATATTCTACTAGGCCTTCAGAAGAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGAGTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATCGGGCTACTGGCGAGGAGGTGCGCAGAGACCTGGACAGGAATAG

Protein sequence

MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKTSLKNHFRAIALAKLYCKLITECSDPQKFQTPYEFHLSFHELELTNSLNFLLIHCVRELHFRDRYQLQEKLQSSLNGLCKYEMHFTLACPRLPPARTTSLIVLVPLIVFCANCIIGASYARVFGTSRLKPVKEPEGERHNFRNGHWRSALREIRELDGLDSESSIYSTRPSEEQISVEDLSHAYKKLDQEYDKFLSECGLSKSGYWRGGAQRPGQE

Homology

[Close]

BLAST of CmaCh01G008420 vs. TAIR 10
Match: AT4G09970.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-06
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 128 LPPARTTSLIV-LVPLIVFCANCIIGASYARVFGTSRLKPVKEPEGERHNFRNGHWRSAL 187
           LP   T  L+  L+P++ FC  CIIG  +  +   SR    K  +G  H   +  WR+AL
Sbjct: 143 LPHLNTGVLLTSLLPVLGFCIICIIGTLHTII---SR----KTSQGHHHG--SERWRTAL 202

Query: 188 REIRE---LDGLDSESSIYS-TRPSEEQISVEDLSHAYKKLDQEYDKFLSECGLSKS 240
            +  E    DG DS S  Y     ++E  + ++++ AY +++ EY +FL ECG+ +S
Sbjct: 203 MDWNEPLASDGHDSMSPEYRVASTNQEATATDEMNEAYSRVELEYKRFLLECGVGES 250

[Close]

BLAST of CmaCh01G008420 vs. TAIR 10
Match: AT4G09970.2 (unknown protein; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 5.3e-06
Identity = 39/116 (33.62%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 128 LPPARTTSLIV-LVPLIVFCANCIIGASYARVFGTSRLKPVKEPEGERHNFRNGHWRSAL 187
           LP   T  L+  L+P++ FC  CIIG  +  +   SR    K  +G  H   +  WR+AL
Sbjct: 111 LPHLNTGVLLTSLLPVLGFCIICIIGTLHTII---SR----KTSQGHHHG--SERWRTAL 170

Query: 188 REIRE---LDGLDSESSIYSTRPSEEQISVEDLSHAYKKLDQEYDKFLSECGLSKS 240
            +  E    DG DS S  Y      E  + ++++ AY +++ EY +FL ECG+ +S
Sbjct: 171 MDWNEPLASDGHDSMSPEY-----REATATDEMNEAYSRVELEYKRFLLECGVGES 212

The following BLAST results are available for this feature:

BLAST of CmaCh01G008420 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G008420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09970.1	1.8e-06	33.33	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXP...	[more]
AT4G09970.2	5.3e-06	33.62	unknown protein; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 213..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G008420.1	CmaCh01G008420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane