CmaCh01G006850 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G006850
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr01: 3575180 .. 3578343 (-)
RNA-Seq ExpressionCmaCh01G006850
SyntenyCmaCh01G006850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACTGGTTGATTCTCCGGTGTCCAACCTTCTTCCTTCAGCCGTTCGTCTGCATTTGGAGACGAGCCATTCACTGAGAGCAGTCGGACTTTTATCGCCGCGTCGCCATGAGAGCTAAGGTAATTGAGTTTAAGATCCATCAATGGATTCAACTTGTTTTGAACTTTTTCATCTGTTTCGAGATGCTTTATAGTATCTGATGTTTTCTATTTCGTTTTCTGGCAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTTGCCATTGTCTGAGGGATGGTTTCGACCTAGGGTTTTGGTTACTGTTTAGTTTTCTTTACGTTATCTTTAGTTTCTTATTTTATTGTTTGACCGTTTTGAATTGTTCTTAATTGCTATGTGATCGATACATTTAGTTTTTATCAATCAAGTTTTATAAGCTTTCGTGTGTTCTTCCGATGGATCTGTCAAAGCATCAGGTCGTTATTTTCTGCGATAATAGATTTATTATTTATCTTTTGGCTGCTAGATTAGGATTCTTTGATATATATTATCTGTGTTTATTCTCTTTAAACATGAGCCGTTGCCAAGCTTCTGAAGGTGTTTCAATTTGATAATAGATTTATTATTTATCTTTTGGCTGCTAGATTAGGATTCTTTGATATATATTATCTGTGTTTATTCTCTTTAAACATGAGCCGTTGCCAAGCTTCTGAAGGTGTTTCAATTTGATAATAGATTTATTATTTATCTTTTGGCTGCTAGATTAGGATTCTTTGATATATATTATCTGTGTTTATTCTCTTTAAACATGAGCCGTTGCCAAGCTTCTGAAGGTGTTTCAATTTGATAATAGATTTATTATTTATCTTTTGGCTGCTAGATTAGGATTCTTTGATATATATTATCTGTGTTTATTCTCTTTAAACATGAGCCGTTGCCAAGCTTCTGAAGGTGTTTCAATTTGGAATTATTGGTGATTGAATTATGTAGCTGATTAAAAAGTTTCCAGGAGTAGGTCTTTTAGATTCGATTAAATTCCTTACAGATTCATTATTGCATTGCAATGCATTTCGATCAAAACAAACCATTTGATTGTTTGGGGGAAGTTTTCCAAAGCTCAACAAACCAGAATGTAGGAATTTAAAATGGTAAAAGGATTTAGGATGTTTGGGAGAAGTTCTCCAAAGCTCAATGAACCAAAATATAGGAATTTAGGATATCTGGATTCGTGGGGGAGTGGATACCAAAAAGGATTATCTGGTGAAGATTTGACTCCTATTTTTGATAGAACCAATTGTATGATTCCTTGGGCTCAATTTAATCAGTTTCTTTTGATATTTAATATTATTTAGGCTGTTGTGCCATTTTCCTTAAACTGTGGTAGGATTTGTTAAGAAAAAAGAGGTTTGGTGTTTCTACCCTTGCTTAGTCTCAGCCCACAGTGATAGGCTCCACACCTGAGCCTCGTTAGACTCATAGGAAGTGTAAGGTGTAAGTCAAGAGAATTGAAGAAGAGATTCAGTCTCTCCCTTAGCCTTCGCCCCTATATTGTGTTTATGGGAGGTAGGCGTGTGTAAGTTGCAATAAGCATATAGGATTGATTATGTATAGAAACTTCCCATTCAATCATTCATATTACATCCTTTTTTGAATGTGGTCTGCTGCAATGTTGATTCTTACCTATAACTTTTCGCCAAAAGAACCCTATTTTCTTTGACTAAGCAGCAGCCCAACTTGCTTCATTCCTTCAAAAGCCACTATAGCTTCCGAATCAAAACCACCTGCATACTGAAAAGATACCGAGTGTTATTGTTGAGTATCATTAAATGTGATCAGAGTATGACTTTGTAGCTTACCTGGTGCACCCTGTAAGCAAAGCGAACCCCTTGAAGAAAAAGGTTTTCTGTTTGTGGTGTTTCGTTCAATTGTAGCTCTTTTGTTATCCTACGCATGCATTCCTTCACTAGCCTCAATGAGCTCAGCTTCATCTGCAACCAATTGTGTTTTACAGTTTTTAATTTTTACCTTCTCTAGTTTAGAAGGTGCAATGGTATGATATTGTCCATTGTCCACTTTGAGCATAAGTTTATGATTTTGCTTTTTGGTTTTTATCCAAAATGTCTCATACTAATGGAGATAGTAGTTCGTATAAATTAAACCCATTATCAACCCCTTAATTAACGGATGTGGGACTTATCTCCCAAAAATTCTCAACAATTCTTCCCTCGAACAATGTATACCATAGAACCTATCTTGAGGTCTATGGAGCCTTTGAACAACCTCCCCTTAATCAAGGTTCGACTCCTCTTGAGCCTTCGAATAAAGTATACATTTTGTTCGACACTTGGTCACTTTTGACTACACTTTCGAGGCTCACAACTTCTTTGTGTTCGACATTTGAGGGGCACGACTGATACTATGTTAGAAACCAGGAATTTTTATAATGGATGGAAGAAAGAAGGAGATTCTTTTTAAATGGATGGAAGTGGGTGTTCATGGTTTTTGGTTTTAGAGCCAAAGTTTGATTAAGAGTTAACTACCTGGGCTGGCAAGCCAGAGTCCAGCATCCATTGGCAAGGGATTTGAAACTTGTTGTACTTGTTACAGTTGAACTCCCTCGTCCTCTCCACATTGCTCACGCTCTGCTCCAACCTGCACAGTTCCAAGCATTTCTCTAGTTCATCAGTCACTTTCCAACTCTGCTTCACCTTATTGGAAACATGAAATACAACAGATTGTACATGCTCGCCTGTCTTGCAAGGCCTGAGCCCTCTTCAACATAGCATTCGTCTCCTCCTTTGGATTCTCTCTAAACGAACACACTTCAGCTTCCAAGCTCTTCAGATCCTTGTAGCTGAATGCCGCCTCCCGCAGTGCGTCTGCCTTCCCCTCCGGCCACCGTGGAAAGTGCTTGAGCACCGCCCTCTCGTCCACGAGCGATGCCAGCTCCCCGTCTAGCCACTTCACGAACCTCTCCACCTCTGCTATGTCTCTTGGCGCTGCCGCTTCCACTTCTCTGATCAGCCGGTTCACGAACTCCCCATGTGTCTCCACCTCCGATTTTATCTGCGCCCATGCTTTCATTCACTTGCCTTTTTCGTCTTTCTCATCCAAAACTTTCCATGTTCTTACAATTATATATCTCTAA

mRNA sequence

ATGTCACTGGTTGATTCTCCGGTGTCCAACCTTCTTCCTTCAGCCGTTCGTCTGCATTTGGAGACGAGCCATTCACTGAGAGCAGTCGGACTTTTATCGCCGCTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAACTGAATGCCGCCTCCCGCAGTGCGTCTGCCTTCCCCTCCGGCCACCGTGGAAAGTGCTTGAGCACCGCCCTCTCGTCCACGAGCGATGCCAGCTCCCCGTCTAGCCACTTCACGAACCTCTCCACCTCTGCTATGTCTCTTGGCGCTGCCGCTTCCACTTCTCTGATCAGCCGGTTCACGAACTCCCCATGTGTCTCCACCTCCGATTTTATCTGCGCCCATGCTTTCATTCACTTGCCTTTTTCGTCTTTCTCATCCAAAACTTTCCATGTTCTTACAATTATATATCTCTAA

Coding sequence (CDS)

ATGTCACTGGTTGATTCTCCGGTGTCCAACCTTCTTCCTTCAGCCGTTCGTCTGCATTTGGAGACGAGCCATTCACTGAGAGCAGTCGGACTTTTATCGCCGCTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAACTGAATGCCGCCTCCCGCAGTGCGTCTGCCTTCCCCTCCGGCCACCGTGGAAAGTGCTTGAGCACCGCCCTCTCGTCCACGAGCGATGCCAGCTCCCCGTCTAGCCACTTCACGAACCTCTCCACCTCTGCTATGTCTCTTGGCGCTGCCGCTTCCACTTCTCTGATCAGCCGGTTCACGAACTCCCCATGTGTCTCCACCTCCGATTTTATCTGCGCCCATGCTTTCATTCACTTGCCTTTTTCGTCTTTCTCATCCAAAACTTTCCATGTTCTTACAATTATATATCTCTAA

Protein sequence

MSLVDSPVSNLLPSAVRLHLETSHSLRAVGLLSPLEEEENEEVEEKAPKDEAEIELNAASRSASAFPSGHRGKCLSTALSSTSDASSPSSHFTNLSTSAMSLGAAASTSLISRFTNSPCVSTSDFICAHAFIHLPFSSFSSKTFHVLTIIYL
Homology
[Close]
BLAST of CmaCh01G006850 vs. ExPASy TrEMBL
Match: A0A7J6F7M0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_009453 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 49  KDEAEIELNAASRSASAFPSGHRGKCLSTALSSTSDASSPSSHFTNLSTSAMSLGAAAST 108
           + + +  L AASR  SAF SGH GKCL TALSST + S  SS  T  STS + L AA ST
Sbjct: 23  RSKVQDNLQAASRMVSAFRSGHCGKCLRTALSSTKEDSCSSSQVTKASTSEILLWAADST 82

Query: 109 SLISRFTNSPCVSTSDFIC 128
           SLI++  NS C STSDF C
Sbjct: 83  SLINKLMNSACFSTSDFTC 101

[Close]
BLAST of CmaCh01G006850 vs. NCBI nr
Match: KAF4365730.1 (hypothetical protein G4B88_009453 [Cannabis sativa])

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-08
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 49  KDEAEIELNAASRSASAFPSGHRGKCLSTALSSTSDASSPSSHFTNLSTSAMSLGAAAST 108
           + + +  L AASR  SAF SGH GKCL TALSST + S  SS  T  STS + L AA ST
Sbjct: 23  RSKVQDNLQAASRMVSAFRSGHCGKCLRTALSSTKEDSCSSSQVTKASTSEILLWAADST 82

Query: 109 SLISRFTNSPCVSTSDFIC 128
           SLI++  NS C STSDF C
Sbjct: 83  SLINKLMNSACFSTSDFTC 101

The following BLAST results are available for this feature:
BLAST of CmaCh01G006850 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G006850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6F7M02.0e-0856.96Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_009453 PE=3 SV=1[more]
BLAST of CmaCh01G006850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4365730.14.2e-0856.96hypothetical protein G4B88_009453 [Cannabis sativa][more]
BLAST of CmaCh01G006850 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G006850.1CmaCh01G006850.1mRNA