CmaCh01G006450 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G006450
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionHexosyltransferase
LocationCma_Chr01: 3354381 .. 3355025 (+)
RNA-Seq ExpressionCmaCh01G006450
SyntenyCmaCh01G006450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTTCTTATATTCTTTCCTATTTTCATTTCTTCTATATAAGATTCTGACGGAGTCTTTGCGGACGACGACGTGTGGTGTTTATTTGGCATACCGTTCGAGCCGATCGGTGGAGTGAGGATTTGGTTACTTTGCAAATTGCTAGGTTTTTTATATTTTGAATGAAAAATGCGGATCAGAAATCTGGTGGTGTTGATGCTCTCTATGACGGTTATTGCTCCGATTCTGCTTTACTCTAATCGCCTCGCCACCATCGAGTTCTCATGTAAGTGTCCTTCTATCTCGCCGATTTCGTTCTGGAATCCGGTTCATTTGCTTTTTTGTTTCGCTGCTATATATAGATTTTGAAATAGAGCTTTCATTTCTGCAGCTAAAGGCGATTTTATTGAAGATTTTTCAACTTCGGTGAGTAAATCCGTCTAGACTCGTTCTGCATGCTTCATCTTGTTATTTGCCATTGCGATATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGCAATACTTAATAGAAATAAATCAAACATCAGATTAAAAGCTCACTACGGACTGTTCTGAGTCCAAAATATCTCCCTGGAGTCGGAGTTCTACCTCTCCGTCTTCGAGCCTATCAGAAAATAAGAGATGTAAAATGA

mRNA sequence

TGCTTCTTATATTCTTTCCTATTTTCATTTCTTCTATATAAGATTCTGACGGAGTCTTTGCGGACGACGACGTGTGGTGTTTATTTGGCATACCGTTCGAGCCGATCGGTGGAGTGAGGATTTGGTTACTTTGCAAATTGCTAGGTTTTTTATATTTTGAATGAAAAATGCGGATCAGAAATCTGGTGGTGTTGATGCTCTCTATGACGGTTATTGCTCCGATTCTGCTTTACTCTAATCGCCTCGCCACCATCGAGTTCTCATCTAAAGGCGATTTTATTGAAGATTTTTCAACTTCGATTAAAAGCTCACTACGGACTGTTCTGAGTCCAAAATATCTCCCTGGAGTCGGAGTTCTACCTCTCCGTCTTCGAGCCTATCAGAAAATAAGAGATGTAAAATGA

Coding sequence (CDS)

ATGCGGATCAGAAATCTGGTGGTGTTGATGCTCTCTATGACGGTTATTGCTCCGATTCTGCTTTACTCTAATCGCCTCGCCACCATCGAGTTCTCATCTAAAGGCGATTTTATTGAAGATTTTTCAACTTCGATTAAAAGCTCACTACGGACTGTTCTGAGTCCAAAATATCTCCCTGGAGTCGGAGTTCTACCTCTCCGTCTTCGAGCCTATCAGAAAATAAGAGATGTAAAATGA

Protein sequence

MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSIKSSLRTVLSPKYLPGVGVLPLRLRAYQKIRDVK
Homology
[Close]
BLAST of CmaCh01G006450 vs. ExPASy TrEMBL
Match: A0A6J1IJS0 (Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111478064 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.1e-13
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSIKSS 49
          MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS  SS
Sbjct: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSKSSS 48

[Close]
BLAST of CmaCh01G006450 vs. ExPASy TrEMBL
Match: A0A6J1INM9 (Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111478064 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS 45
          MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS
Sbjct: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS 44

[Close]
BLAST of CmaCh01G006450 vs. ExPASy TrEMBL
Match: A0A6J1GGB2 (Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111453652 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSIKSS 49
          MRIRNLV LML MTVIAPILLYSNRLATIEFSSKGDFIEDFSTS  SS
Sbjct: 1  MRIRNLVALMLFMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSKSSS 48

[Close]
BLAST of CmaCh01G006450 vs. ExPASy TrEMBL
Match: A0A6J1GFC2 (Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111453652 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.0e-11
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS 45
          MRIRNLV LML MTVIAPILLYSNRLATIEFSSKGDFIEDFSTS
Sbjct: 1  MRIRNLVALMLFMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS 44

[Close]
BLAST of CmaCh01G006450 vs. ExPASy TrEMBL
Match: A0A1S3B1U6 (Hexosyltransferase OS=Cucumis melo OX=3656 GN=LOC103485211 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS 45
          M IRNLV LML  TVIAPILLY++RLA+++FSSKGD +E F+TS
Sbjct: 1  MLIRNLVALMLFFTVIAPILLYTDRLASLKFSSKGDLVEGFATS 44

[Close]
BLAST of CmaCh01G006450 vs. NCBI nr
Match: XP_022977917.1 (probable galacturonosyltransferase 4 isoform X2 [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSIKSS 49
          MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS  SS
Sbjct: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSKSSS 48

[Close]
BLAST of CmaCh01G006450 vs. NCBI nr
Match: XP_022977915.1 (probable galacturonosyltransferase 4 isoform X1 [Cucurbita maxima] >XP_022977916.1 probable galacturonosyltransferase 4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 7.1e-12
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS 45
          MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS
Sbjct: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTS 44

[Close]
BLAST of CmaCh01G006450 vs. NCBI nr
Match: XP_022950604.1 (probable galacturonosyltransferase 4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSIKSS 49
          MRIRNLV LML MTVIAPILLYSNRLATIEFSSKGDFIEDFSTS  SS
Sbjct: 1  MRIRNLVALMLFMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSKSSS 48

[Close]
BLAST of CmaCh01G006450 vs. NCBI nr
Match: KAG6603847.1 (putative galacturonosyltransferase 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-11
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSIKSS 49
          MRIRNLVVLML MTVIAPILLYSNRL TIEFSSKGDFIEDFSTS  SS
Sbjct: 1  MRIRNLVVLMLFMTVIAPILLYSNRLPTIEFSSKGDFIEDFSTSKSSS 48

[Close]
BLAST of CmaCh01G006450 vs. NCBI nr
Match: KAG7034028.1 (putative galacturonosyltransferase 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-10
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 1  MRIRNLVVLMLSMTVIAPILLYSNRLATIEFSSKGDFIEDFSTSIKSS 49
          MRIRNLVVLML MTVIAPILLYSNRL +IEFSSKGDFIEDFSTS  SS
Sbjct: 1  MRIRNLVVLMLFMTVIAPILLYSNRLPSIEFSSKGDFIEDFSTSKSSS 48

The following BLAST results are available for this feature:
BLAST of CmaCh01G006450 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G006450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IJS09.1e-1395.83Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111478064 PE=3 SV=1[more]
A0A6J1INM93.5e-12100.00Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111478064 PE=3 SV=1[more]
A0A6J1GGB21.3e-1191.67Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111453652 PE=3 SV=1[more]
A0A6J1GFC25.0e-1195.45Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111453652 PE=3 SV=1[more]
A0A1S3B1U61.4e-0570.45Hexosyltransferase OS=Cucumis melo OX=3656 GN=LOC103485211 PE=3 SV=1[more]
BLAST of CmaCh01G006450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022977917.11.9e-1295.83probable galacturonosyltransferase 4 isoform X2 [Cucurbita maxima][more]
XP_022977915.17.1e-12100.00probable galacturonosyltransferase 4 isoform X1 [Cucurbita maxima] >XP_022977916... [more]
XP_022950604.12.7e-1191.67probable galacturonosyltransferase 4 isoform X2 [Cucurbita moschata][more]
KAG6603847.13.5e-1191.67putative galacturonosyltransferase 4, partial [Cucurbita argyrosperma subsp. sor... [more]
KAG7034028.11.0e-1089.58putative galacturonosyltransferase 4 [Cucurbita argyrosperma subsp. argyrosperma... [more]
BLAST of CmaCh01G006450 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G006450.1CmaCh01G006450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0045489 pectin biosynthetic process
cellular_component GO:0000139 Golgi membrane
molecular_function GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity