CmaCh01G005970 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G005970
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRibosomal protein S12
LocationCma_Chr01: 3137877 .. 3142537 (+)
RNA-Seq ExpressionCmaCh01G005970
SyntenyCmaCh01G005970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGCTACGGTGTCGTATCCGTTCTTTATACTCACCGCCGTAGGAGTGGGACCCATGAATATGGCAGAAGTAAGCAGGTGCATGTGATCCGCCGCCACTACTTACAGCTCACCAACCCAGTCTCCATTGGAGCGTTCTTCACCTCGAGTTCAATCAAACTCACTCAATTCTTTTCTTTTTTTGGGCTAGGTCCACCCAAACCAAAATCTTGGGTGCCCATCAGCCCAACCTAGTTGCTATCTATGTCTCTCTCTCCACGAGCTTGTGATTAGAAAAATGGGAAGGGTTCACTGTGGACTCACAAGCTTCCAATTTGATTGATGTAATGTTTGGTGCGACAAGAGGGCATGGCATTCCATTCCTAACCTCCGCTTCTTCCCATCTCTCTTTGATATCTTCTACATAAATTTTGACACACTTAACAACCATCAATATCTTCATCTCTAATGCAACATTAATAATGTCTACTCAACTAATGTTTATAAAACTACCATTCCAAGCAATGGGGCTGTTATGTGCTGAATCGGCCCGACACTTGTCCGGAATCGTTCGAGTTTGAGAAATGATTTACACAAAGCATGGTAGCTTACGAAGGAAGTTGATGCCAAACCTTGTTTTTTATGCATCTTCTTAGTAGCAGAATGAGTTAAAACTTTGAAACAAATCATGGGGATGTAATAGCCCAAGCCTATCAATAATAGGTATTGTTGTCTTTTGAGTTTAATGTTTTCATACTCTTGTAAAGAATGTTTTGTACCGGTATTAATAGGTTTAATGATTAGAGAGTTAGGGATGAACTATTTTGGAGGAAAGGCGTGAGATTTTTTGTTTTAAAGAAACCATTATTCAAAAGAAGAAGGCTTGCAGTCTTCAAAAGCTATGTGGCTTTTAATAATTTGAGATCGCCTGCAAAAGGGAACACATCCTTCTCCTCCACTCTTTCCCTTTTCCTTTTCCTTTCTCAGACCCCATTTCCATGGCGGACTATGCTTTCTTCTCTCTATTAATTTAACTTAAAAAACCAAACCCCTTTTCTTCTCCAAAGTCAACTCTGGTCAACCGCCATTGACGCAACCTCACAAATCAGAATCCTATGTCTCTTTTTATGTTCTTCACCTAACTCTCCCATTGCACCTAATCAACCTAAAAACCATCCTATTTATCAGAATAATTGGTAATTGGTTAAGGATGGTTGGAAGGGAGTCTTTATTCAAAAAATAATAATGTGTTTATAAGTAAGAAATACATATAAAATCTAATTCATGAGAACTTATGCGAACAATATCATACCTCTCATAACATGCTATCAAAGTCATGCCCTTCATTTAGCCATGTTAACAAAGAAATTACTAATCTCGAAGGTGTAGTCAAAAGTGACTGATGTGTCAAACAAAGGGTATACTTTGTTTGAGAGCTTCAAGGAGGACTTGAACCTCGATTAAGGGGAGGGTGTTTGAGGGTTCACAAGCTTTAGGGAGACTCTATATTTTATGAACAAAATCATACTATAATGAAGATTTGTGATTCCTAACCTAATTCAATAGATAAAGACATGAAAAAAAGAGAGAAGGAAAGGATTGATAAAGTTTGTTATGATATTTAATTTGTTAAGATTTAGCTTTTAAGCTAAAAAGCTGCAGGTGGCCGGAGAAGACGACCGGAGCGCGGTGGAGATGATATGTAAACAGAGAAACCCCACATTTTCTACAAGATCAATTTGAAGAGCTAAAACCAAAAGAAAGCAGTAATACATTTGTAGTTATTTTTTTGATTCTTGTCTAACCCTCTTCATCTTACCACCAAGGCCTACAAGAAAATCAGCTGGAAACAAAGATTGAATTTCACTCGACAGATCCAGAAACAAACGCTGTCGTTCGACTGCCTTCCGCTTCATCATCGGCCGAGATTTCGGTTTCCTTGGCGCCATCGGACACCGAAGACTTGTGGGGATTTTATGCTCCAAAGAAGTCGGAGTTTTGAACCCATTGTCATCGTCTTCAACAGATTTGCGTTCGTTGTCGTGGTCGTCATGGTCTCGATGTTTGGAAGTTAGGTATGTGAGAAGAAAAGTGAATTCCATGGCGTTGACATCATTTTCAGAGAGTAAGATACTGGAATTGAAGAGGGCCATGAAGTGAAAATACGTGCATGGAAGGTAAAAAAAGTAAATTGGGAGAGGAAAATAGGAGAGGAGGGTGTGGAAATATAGGAATTGAAAGGGGGTTGGGGGGATATATAATTATGAAACCCACTACATGTGTTTGTTTCTTGTTTGTGTTGTGATTTTCAATGGCTTTGGATTTTAGCTCTCAAGGTGTTCCGAGTAGAGAGAGAAAAAGACAGACAGAGTGAGGGAAAAATAGAAAAGAGCTTTCAAATTCTGCACTTCGGTGAAGGATCCAATGCAACAAATATGCACATCCATATCCACATGTATTCCCTCTTTACCTTACAATTTTTTAATAAATAATTTCTCAACTTTTACCAAAAAGGTATATTACGGCGATGTCCCAGATTGGTTGGGGAGGAGAACAAACCGTTCCCCTAACAGATGCGTTTCGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAGATCTCATGTACGGTTTTGTTGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCTACTATCACCCCCAAAAAACCAAACTCTGCCTTATGTAAAGTTGCTAGAGTACGCTTAACTTCCGGATTTGAAATCACGGCTTATATACCTGGTATTGGCCATAATTTACAAAAACATTCTATAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACTTGGTGTGAGATATCAAATTGTTCAAGGAACCCTAGATGTTGTCGGAGTAAAGGATCGTCAACAAGGGCCCCTTGAGGGGAAGCCCGAGAGAGAAAACCCAAAGAGGACAATATCTGCTAGCAGTATATCTAAGGCGTTACAGTGACCGTCTCCTCGAATAATTTTTCCATATCATTATATTCTCGACCTATAACAGTCCAAGTTTACTGCTAGCAAATACTGATTGTTTTGGCTCGTTATGTATCATTGTCAATTTCACGGTTTTAAAAAGCGTATGCTATGGAGAGGGTCTATTCCTATTCCGACTAGTGCCTCTGTGACATCCCACATCGCTTTGAGAGAAGAACGAAACATTCTTTACAATGGTGTGGAAACCTCTCCTAACATATGCATTTTAAAGCTTTGTAGTAAAGTCTAGAAGGAAAAGTTCAAACGGGAAAATGTTTGCTAGAGTTGAGATTGAGTCGTTACAGCCTCACACTGTTCGATGACTTGTTCTTATACCATTTGTAACGAGCTAAAGCGAATAATATCTATTAGCGATGAGTTCGAGTTTTTAAAAAACAAGGTGGGATGAGGAAGTCCTTACTAACCTTGTTCCTATCCCGACCTCTAATTTCAATTTTTATTTTCACAAAATTCTTCATTTATTTGTGTAGGATCAAGACGGAATTTCATACGAATTTCAAATTCGAATCGCTCAAGTGTGGTTCTCTTTCTCTCTCTAGCTAAAAAGAGTGAGGCAGGCTTTAAGAGAACATGAAGTTTCGGCCTAGCAATCGCTTTAGTCCAGATCTCTACAAACTTTGAGGCACACATCCACGTGGTTCACTACATAAAAAAGAAAAAGAAAGAAAGAAAAAAACAGCATAGCATTTCAAAGCATGCATGCATGTATGTGTCGTGTTTTGGTGCAAGGGCTGTCGGGAAAATGTTGTTTGTTTTTTTGACGAGAAAATTGCTACAAAACACAGGTACCCCTTTGTGAATACTAAATATTAAAAGGGTAGTCGAGCAAAAAACAGAAAGAAAAAAAAAAAAAAACATGGGCTTGTAATTTTGTGGAGAAAGCTATGTGGTTGGATGATTCAAAAAGGGAAGTGTAGTTGTTCATCCACTGTCGGATGCTGGAGACAACCTCTGCTATGATCATTGCTCCCATGCACGCTCACCCTCCCATCTAACCCTAACCCTTTTTCAATTTCAATACCACTTACTCCCCCAATTTACTCTAAGTGTTTTTCTTTTCGGTTCCACAAATGTTTTATGTTGAGAACAAATATTTCTGTAACTATTTAATTTGGATTAAGATTAGTATCTGATGATGACCAATGAGTATAGAAAATGGAGAAGAGAATTAATTTTATAACTCGTCAAAGATACATACAGGAGATGAAATGTGATTTCTTATAGTCTTATTAGCTTGTTGACTTTCAAGCTGTAATGATAGAATATGATGTGCATCAAGAGTTATGGGCATTACAGATCATAACTATTTTCCTTTTTCCTATTCAACAATTAAAAATGGAGAAAAATATCATCTATAGTACAACTACAATGTCAGGTGTATTTTAGGCCAGGTATACGAGTATTTTATAAATAAATATTTAGATATTTTAAAAATAAATTGTCTATTATGTACTGAAGATTTAGTAGAAAATATAAGAGACGAGATAAATAAGAAAATGTTAAATGGGTCCCACAAATGCTGCCCATTTTGATGTCTTGGAGTGAATAATAATAATAATAATAATGCTTCATTTTGTGGAGATTGTGTGCTTTAGGCTTAGGATTCCTTTTTTCATTTTTCATTTTTTCATTTTATTTTGGTAGGATTCCTAA

mRNA sequence

ATGGAATGCTACGGTGTCGTATCCGTTCTTTATACTCACCGCCGTAGGAGTGGGACCCATGAATATGGCAGAAGTAAGCAGGTGCATGTGATCCGCCGCCACTACTTACAGCTCACCAACCCAGTCTCCATTGGAGCGTTCTTCACCTCGAGTGGCCGGAGAAGACGACCGGAGCGCGGTGGAGATGATATATCCAGAAACAAACGCTGTCGTTCGACTGCCTTCCGCTTCATCATCGGCCGAGATTTCGGTTTCCTTGGCGCCATCGGACACCGAAGACTTGTGGGGATTTTATGCTCCAAAGAAGTCGGAGTTTTGAACCCATTGTCATCGTCTTCAACAGATTTGCGTTCGTTGTCGTGGTCGTCATGGTCTCGATGTTTGGAAGTTAGTAAGGGTGACTTATCTGTCAACTTTTCTACTATCACCCCCAAAAAACCAAACTCTGCCTTATGTAAAGTTGCTAGAGTACGCTTAACTTCCGGATTTGAAATCACGGCTTATATACCTGGTATTGGCCATAATTTACAAAAACATTCTATAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACTTGGTGATTCCTAA

Coding sequence (CDS)

ATGGAATGCTACGGTGTCGTATCCGTTCTTTATACTCACCGCCGTAGGAGTGGGACCCATGAATATGGCAGAAGTAAGCAGGTGCATGTGATCCGCCGCCACTACTTACAGCTCACCAACCCAGTCTCCATTGGAGCGTTCTTCACCTCGAGTGGCCGGAGAAGACGACCGGAGCGCGGTGGAGATGATATATCCAGAAACAAACGCTGTCGTTCGACTGCCTTCCGCTTCATCATCGGCCGAGATTTCGGTTTCCTTGGCGCCATCGGACACCGAAGACTTGTGGGGATTTTATGCTCCAAAGAAGTCGGAGTTTTGAACCCATTGTCATCGTCTTCAACAGATTTGCGTTCGTTGTCGTGGTCGTCATGGTCTCGATGTTTGGAAGTTAGTAAGGGTGACTTATCTGTCAACTTTTCTACTATCACCCCCAAAAAACCAAACTCTGCCTTATGTAAAGTTGCTAGAGTACGCTTAACTTCCGGATTTGAAATCACGGCTTATATACCTGGTATTGGCCATAATTTACAAAAACATTCTATAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACTTGGTGATTCCTAA

Protein sequence

MECYGVVSVLYTHRRRSGTHEYGRSKQVHVIRRHYLQLTNPVSIGAFFTSSGRRRRPERGGDDISRNKRCRSTAFRFIIGRDFGFLGAIGHRRLVGILCSKEVGVLNPLSSSSTDLRSLSWSSWSRCLEVSKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVKDLLGDS
Homology
[Close]
BLAST of CmaCh01G005970 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 125 SRCLEVSKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLV 184
           +R    SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIPGIGHN Q+HS+VLV
Sbjct: 35  TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLV 94

Query: 185 RGGRVKDLLG 195
           RGGRVKDL G
Sbjct: 95  RGGRVKDLPG 104

[Close]
BLAST of CmaCh01G005970 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.0e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 116 LRSLSWSSWSRCLEVSKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHN 175
           +R+++ S   R     +G  +  +STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHN
Sbjct: 15  IRNVTKSPALRGCPQRRGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN 74

Query: 176 LQKHSIVLVRGGRVKDLLG 195
           LQ+HS+VLVRGGRVKDL G
Sbjct: 75  LQEHSVVLVRGGRVKDLPG 93

[Close]
BLAST of CmaCh01G005970 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-21
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 141 TITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVKDLLG 195
           TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRVKDL G
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPG 92

[Close]
BLAST of CmaCh01G005970 vs. ExPASy Swiss-Prot
Match: Q3V510 (30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-21
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 141 TITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVKDLLG 195
           TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRVKDL G
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPG 92

[Close]
BLAST of CmaCh01G005970 vs. ExPASy Swiss-Prot
Match: A4QJD9 (30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-21
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 141 TITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVKDLLG 195
           TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRVKDL G
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPG 92

[Close]
BLAST of CmaCh01G005970 vs. ExPASy TrEMBL
Match: A0A445BUJ8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g038868 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.0e-25
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 131 SKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVK 190
           SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRVK
Sbjct: 15  SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVK 74

Query: 191 DLLG 195
           DLLG
Sbjct: 75  DLLG 78

[Close]
BLAST of CmaCh01G005970 vs. ExPASy TrEMBL
Match: A0A5D2J7E2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G218400v1 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 116 LRSLSWSSWSRCLEVSKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHN 175
           +RS  W    RCL  SKG+LSVNFSTITPKKPNSAL K+ARVRLTSGFEITAYIPGIGHN
Sbjct: 16  IRSCDWI--RRCLSGSKGELSVNFSTITPKKPNSALLKIARVRLTSGFEITAYIPGIGHN 75

Query: 176 LQKHSIVLVRGGRVKDL 193
            ++HS+VLVRGGRVKDL
Sbjct: 76  SKEHSVVLVRGGRVKDL 90

[Close]
BLAST of CmaCh01G005970 vs. ExPASy TrEMBL
Match: A0A4S8I4D9 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t01310 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 130 VSKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRV 189
           +SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRV
Sbjct: 1   MSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRV 60

Query: 190 KDLLG 195
           KDL G
Sbjct: 61  KDLPG 65

[Close]
BLAST of CmaCh01G005970 vs. ExPASy TrEMBL
Match: A0A371IH37 (Ribosomal protein S7 (Fragment) OS=Mucuna pruriens OX=157652 GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 128 LEVSKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGG 187
           L  SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGG
Sbjct: 126 LSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 185

Query: 188 RVKDLLG 195
           RVKDL G
Sbjct: 186 RVKDLPG 192

[Close]
BLAST of CmaCh01G005970 vs. ExPASy TrEMBL
Match: A0A4D6NF64 (Ribosomal protein S7 OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g2794 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 128 LEVSKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGG 187
           L  SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGG
Sbjct: 282 LSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 341

Query: 188 RVKDLLG 195
           RVKDL G
Sbjct: 342 RVKDLPG 348

[Close]
BLAST of CmaCh01G005970 vs. NCBI nr
Match: KAG2323189.1 (hypothetical protein Bca52824_016402 [Brassica carinata])

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-26
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0 

Query: 116 LRSLSWSSWSRCLEVSKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHN 175
           +RS  W+   RCL  SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIPGIGHN
Sbjct: 16  IRSCDWT--RRCLSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN 75

Query: 176 LQKHSIVLVRGGRVKDLLG 195
           LQ+HS+VLVRGGRVKDL G
Sbjct: 76  LQEHSVVLVRGGRVKDLPG 92

[Close]
BLAST of CmaCh01G005970 vs. NCBI nr
Match: XP_017434519.1 (PREDICTED: 30S ribosomal protein S12, chloroplastic [Vigna angularis])

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-25
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 131 SKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVK 190
           SKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRVK
Sbjct: 11  SKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVK 70

Query: 191 DLLG 195
           DL G
Sbjct: 71  DLPG 74

[Close]
BLAST of CmaCh01G005970 vs. NCBI nr
Match: RYR42395.1 (hypothetical protein Ahy_A08g038868 [Arachis hypogaea])

HSP 1 Score: 124.8 bits (312), Expect = 8.3e-25
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 131 SKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVK 190
           SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRVK
Sbjct: 15  SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVK 74

Query: 191 DLLG 195
           DLLG
Sbjct: 75  DLLG 78

[Close]
BLAST of CmaCh01G005970 vs. NCBI nr
Match: KAF8023317.1 (hypothetical protein BT93_F0732 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 131 SKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVK 190
           SKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHN Q+HS+VLVRGGRVK
Sbjct: 22  SKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVK 81

Query: 191 DLLG 195
           DL G
Sbjct: 82  DLPG 85

[Close]
BLAST of CmaCh01G005970 vs. NCBI nr
Match: XP_038695507.1 (30S ribosomal protein S12, chloroplastic [Tripterygium wilfordii])

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-24
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 0 

Query: 124 WSRCLEVSKGDLSVNFSTITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVL 183
           W   L  SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIPGIGHN Q+HS+VL
Sbjct: 40  WVHVLSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVL 99

Query: 184 VRGGRVKDLLG 195
           VRGGRVKDL G
Sbjct: 100 VRGGRVKDLPG 110

[Close]
BLAST of CmaCh01G005970 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-22
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 141 TITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVKDLLG 195
           TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRVKDL G
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPG 92

[Close]
BLAST of CmaCh01G005970 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-22
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 141 TITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVKDLLG 195
           TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRVKDL G
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPG 92

[Close]
BLAST of CmaCh01G005970 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-22
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 141 TITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVKDLLG 195
           TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQ+HS+VLVRGGRVKDL G
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPG 92

[Close]
BLAST of CmaCh01G005970 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 140 STITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVKDLLG 195
           ST TPKKPNSA  K+A+VRL++  +I A+IPG GHN Q+HS VL+RGGRVKD  G
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPG 92

[Close]
BLAST of CmaCh01G005970 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 140 STITPKKPNSALCKVARVRLTSGFEITAYIPGIGHNLQKHSIVLVRGGRVKDLLG 195
           ST TPKKPNSA  K+A+VRL++  +I A+IPG GHN Q+HS VL+RGGRVKD  G
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPG 92

The following BLAST results are available for this feature:
BLAST of CmaCh01G005970 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4GYN82.0e-2685.7130S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps... [more]
A4QJX74.0e-2269.6230S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
A4QJV52.6e-2192.5930S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
Q3V5102.6e-2192.5930S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE... [more]
A4QJD92.6e-2192.5930S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=... [more]
BLAST of CmaCh01G005970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A445BUJ84.0e-2595.31Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g038868 PE=3 SV=1[more]
A0A5D2J7E21.2e-2479.22Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G218400v1 P... [more]
A0A4S8I4D91.5e-2492.31Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t01310 PE=3 SV=... [more]
A0A371IH371.5e-2491.04Ribosomal protein S7 (Fragment) OS=Mucuna pruriens OX=157652 GN=ndhB2 PE=3 SV=1[more]
A0A4D6NF641.5e-2491.04Ribosomal protein S7 OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g2794 PE=3 SV=1[more]
BLAST of CmaCh01G005970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG2323189.11.5e-2683.54hypothetical protein Bca52824_016402 [Brassica carinata][more]
XP_017434519.12.2e-2595.31PREDICTED: 30S ribosomal protein S12, chloroplastic [Vigna angularis][more]
RYR42395.18.3e-2595.31hypothetical protein Ahy_A08g038868 [Arachis hypogaea][more]
KAF8023317.11.1e-2493.75hypothetical protein BT93_F0732 [Corymbia citriodora subsp. variegata][more]
XP_038695507.11.8e-2485.9230S ribosomal protein S12, chloroplastic [Tripterygium wilfordii][more]
BLAST of CmaCh01G005970 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00065.11.8e-2292.59ribosomal protein S12A [more]
ATCG01230.11.8e-2292.59ribosomal protein S12B [more]
ATCG00905.11.8e-2292.59ribosomal protein S12C [more]
AT2G07675.11.2e-1365.45Ribosomal protein S12/S23 family protein [more]
ATMG00980.11.2e-1365.45Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 160..179
score: 70.35
coord: 179..196
score: 72.38
coord: 144..159
score: 85.16
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 137..194
e-value: 3.9E-19
score: 68.4
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 129..193
NoneNo IPR availableGENE3D2.40.50.140coord: 113..195
e-value: 2.4E-28
score: 100.3
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 129..193
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 137..194

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G005970.1CmaCh01G005970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042773 ATP synthesis coupled electron transport
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome