CmaCh01G004190 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G004190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr01: 2106816 .. 2112227 (-)
RNA-Seq ExpressionCmaCh01G004190
SyntenyCmaCh01G004190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTTGGATCCAAAGATTATACACTCACCCTCCGTTCTTCTCCTTCAGATCCCAATTCCATGGGACATTCCTCAAACTCCGGAGGCGTTATGGCGGCGGCGGCAATGGGCGTCTTCATTTTGGTGCTGAGCGGAAGTCATTGCAACGTTGCTTCTCCAACTCCTTCCAGTTATGGCAACATCACCGTGGCCGCTGCGGCATCGATGTGGTGCGATGGCCGCACTGAAGAATGCCTCACTGGAGATCAACGCAATAACAATTGTGGCCCATATACTCGCGTCTGTTGATCAACGCAATAACAAGCAGAACCAACCAAAATGTTGAAACTATCACTAAAATTACATTTCACGGCATGTAAGTAGAGAAGCAGCCCTCGAGTTGGTTGGGCTCAATGTTATAGTTATATTTGTTCCGGGCGTGTTGTATTATTTTACTATTCTATTTCTTGTTTGTATGACTGTGAATATTTGCTGAATCTACCACACCTGTGGTGAGAGTTCTCTTATTTATAATCATTTACCGAATACAGAAATATGTAAATTACAAATAATATGGAAATAACGATAAAAGGAAAGAATAATAAATGAATACAATATATTTGCCTTTAATAAAATGGCAAATATGGTAACCCGTAATGCTAGATATTTGTCTTATAATGAACGGTCAACTATCCTTAACACCCCCCCGCAAGCTGAGTGTCAGATTTGAACGAACGTGAAGTTTGAATCTAAAAAATTCAAAGAGTGGTCGAGAAATACTTTTTGTGAATATGTCAGCAACTTGAAGATGAGAGGGTACATATTGTGTGCGAAGTTTGCCAGCGATAACAAGTTCTCGAAGGAAATGATAATCTAGTTTAACATGTTTGGCCCGCTTGTGAGAAACAGGATTAGAGCTAAAAAAAATAGCACTTTTGTTGTCACATAAGAGTAAGGGCTGGTGTGAAATAGGGACCTTGAGGTCATGCAAAAGATGCGTAACCCAAAGAAGTTCAGTAGCAGTTGTGGCAAGAGCACGATACTCAGATTCACAGCTGGAGCGTGAGACAGTAGGTTGCTTTTTGGCACTTCAAGAAACGAGATTGTTACCAAGATAAATAGAATAGCCGGATGTAGAACGACGAGTATCGGGATAACCAGCCCAGTCAGCATCCGAATAAGCGACTAGCGTACTAGGAACAATGGATGAACGAAAGGTAAGACCAAAGTGGAGTGTTCCTTTGACATAGCGAAGAATACGTTTGACAGCAAGAAAGTGATCTGCAGTAGGGGCATGCAGGAATTGACTGACAGAATTGACAGCATAGGCAATATCTGGACGCGTAATACTCGAAGTACTGAAGGGCGCCAACAAGAGATCTGTAGAGAGTAGGATCAGAGAAAGGAGAACCATCAGCAGTCAAGTGTTGAGAAACAACCATGGGAGTGTGAACTGGTTTGCTATCGAGCAACTTAGCACGAGTAAGAATATCTCGAGCATATTTTAACTGACTAATAAAGAGACCATCAGGAGTGGGTGAAGCTTCAAGACCAAGAAAGTAACTAAGAGAACTCAAATCTTTGGTAGCAAACTCAGAATGAAGCTTGCGAGTAAAGTTGTCGATAAGAGATGAGTTGTTGCCAGTAACAATAATGTCATCAACATAAAGAAGCATATAGATAAGGTTAGATTGCTGATAAAAGACAAAAAGGGACGTGTCAGCGCGACTGCAAGAAAACCCAAGTGTAAGAAGAAATGAGCTAAAACGCTGAAACAAAGCACGAGGAGCTTGCTTTAAGCCATAGAGGGCTTTCTTTAATAGACAAACATGAGTGGGGAATCGAGGATCAATATACCCAGGAGGTTGTTCCATATGAACACGTTCAATAAGAGTTCCATTGAGAAAAGCATTCTTGACATCAAGTTGTCGAAGAGGCCATTTATTTGTGACTGCAATAGAAAGCACAACACGGACAGTGGTAGCTTTGACAACCGGACTGAAAGTGTCAGTGTAGTCAAGACCAGGAACTTGAGTATAACCTTTGGCAACAAGACGTGCCTTGAAACGCTCAACGGATTCATTAGGCAAATATTTAATACGAAACACTCATTTAAAGCCCACGATGTTGATGTTGGCAGGGTGAGGAACCAAAGTCCAAGTATCATTTTGTTGTAACGCTCGAATTTCTTCATCCATAGCAGCCACTCAAGCAGGATTCTTAGCCGCAAATTTGAATCTTTTTGGCTCAATGGATGCAAGAAGAGCAGAAAGAAGTCCAGATGAGCCCAAAATACCAAGATTTGTTGGATGAAGAGTCTTGAATATACCAGCTTTGGCTCGTGTGATCATAGGATGAGTGCTTAAAGAAGAGAAATCAACAGGAGGTTCAATAGAGGTCGAATTAGAAGTCGAGGGTGGCAAAGTGGAACCTGCAAGAGAAGTATCAACCTGCACAGACTCATCTACAAGGTCAGAACAAATATCATATGAGGATATTCTGGATCGAGGAATGTGCGGTGATGAAGTGGTAGGGGGGATGAATCAATATGATGAAGATGTGGTTCCAAGAAATTTGAAATAGGAATAGAGGAAAGAGGTTGGGCCTGGGAGCTAGGGATAGGAGGAAAGTGAATTTCATTAAATTGAGCCTAGCAGGTGATATATAGCTTAGTGGTGCCGGGATCAAGACAGCGGAACCCTTTATGAGCAGGACTATAACCCAAAAAAATACAAGGAATGCTGCGGGGAGAAAGCTTGTTAAGCATATAATCACGCAAATAAGGATAAACACGACAACCAAAGGGATGAAAATTGTCATAATGTGGAGTGTAGCCATAAAGGAGTTCAAAGGGTGACTTACCTCCAAGAAGTGGATTAGGCAACCGGTTGATAATATAAGTTGCAGTGCTGAAGGCATCAACCCAAAAACGAAGAGAAAGATGAGAGTGAAAGAGAAGGGTCAAGCCAGTCTTAGTCACATGACGATGTTTTCTCTCAGCACGACCATTTTGAGCAGGAGTATATGGACAAGAGAGTTGATGGTGGATGCCAGAATTACGTAAATGAGTTTTGAAACAACTACTAGTAAATTCGGTACCACCATCGCTTTGAAATACCTTGATACGAGAAGAATATTGATATTCCATAAATTTTTGAAATTGAAGAAAAATATCAAAAAAATCAAATTTAAATTTTAAAGGGTAAAACCAAGTGAATCGAGAATAATCATCAATAAAAATAGCATAATAAAGAAAACCCGAATTTGATTTGACGGGAGAAGGACCCCAAAGATCACAAGGAATAAAATCTAACACATGAGACGACCTACGTTCATTGCGGGAATAAGGCAATCGATGACTTTTCGCAAGCTGACAAGTATTACATAATGATGGAGAAGACAATAAAGACATAAGAGAAAGATGACCTTTTCTATTTAAAAAAGAAATAACAGAATGATTCACATGACCAAGACGAGCATGCCATAAATCATATGAAGCACGTAAAAGTTTGTTTCTAAGGGCTGAAATAAAAGCAGAGTTGCCGCGCTCCAGCACATATAGCCCTCCATCTCTTTTACCGATTGCCACCACCCTTCCTGTTTGACGATTCTGAATAGTAATAAGATTATTAGTAAATGTAACGGAAAGAGGAAAATCAGACGTTAATTTACTTATGGAAAGAAGATTTTTAGTGAGGTGAGGGACAACCAATACATCTAATAAGTGAATATTTGGAACAAGAGAAAGAGTATCGGTATGGGTAATGGGTAGGGATGCACCGTTTCCTACGATCACAGAGTCCTTACCCGTGTAATTTTTAGACTGATCCAGAATAGACGGGTCGGCAGTTATATGGGCCGAAGCTCCAGTGTCCAGAAACCAATCAGCAGCATCGGGTCTAGCAAGTGTTAAAGGCTTCAGCAAGGTGAGCATGAGAAGAATCAGGTCGAACATACCGTTGGTTGCAGCGGTCAGCATAATGGCCCTCTTTGCGGCATATTTGGCAGTGAGGTGGTCGACGACCCTGACTTGAGTGGGTTCGTCCTCGATTAGAAGAGTTGTTTTTGTGAGAATAAGAACGACCTCGCTGGTTGGTAAAGAAAGCAGGGTGGCTTCCATGGGTGCGACCACAATTAGTGGCTGTGAATGCTGTAGGAGTGGAGTCAGAGGACTCAAGGGAGCACAACTCAAAACTTTCAGCTTTAGAGACTAAATCTGCAAAACAAGGGATAGGGGTGAGAGCCATCTGAGCAGTAGAAAAAGCTGAAAATTTGGTGCCAAGTCCACGAAGGAACCAGTGCACTTTATCAATGTCCTCGACGGGTCTGCCAATGGCATGAAGTTGGTCACAATTTTTTTTGAAGGCACGAGCATACTCAGCAACAGGTTTGTTGCCACGTTTCATCAACTGCAAGTCATCCTTGAGTCTCAGTTCACGAGCTTTAGACTGATGGCTGAACGTAGTTTCCAACGCAAGCCGAACATCACGTGCAGTAGAGAGACCAACGACAACAACCATGGCTTCCTCAGTGAGAGAGGAGAGCAGGAGACAGAGAAGTCGTTGATCAGCTGCTCTCCATGCCAAATATTTGGGGTTGAGTGTTGAGGAGGTTTTTGGTTCAAAACGAGATGGTGGAACCATAGTTCCATCGACATAGCCCAGCATATCTTGACTCTCAAGGAGAGGGAGAAGTTGGCTTTGACTCTCAAGGAGAGGGAGAAGTTAGCTTTTCATCGGGCTCTGATACCATGTGAATGTTTGCTGAATCCACCATACCTAAATGGTGGTGAGAGTTCTCTTATTTATAATAATTTACAGAATACATAAATATGGAAAATTACAAATAATATGGAAATAACGATAAAAGGAAAGAATAATAAATGAATACAATATATTTGCGTTTAATAAAAGGGCAAATATGGTAACCCGTAAGGCAAATATATATTTGCCTTATAACAAACGGTCAACTATCCTTAACAATGACTATTAGGCGAAATGTACTGTAGGGGATGCGACCAATCGGCCAACTCCTCCTACCAAATTATATGATATTTAAGCTGTGATGGTTCTTTCTTTCCACTTTGCTCTCAAACTCTCGTTTAAGGATCCTTCTGGCCGTATTCTAAGACATTCTTCTCAAAATAGGATTAGAGGCTTGAGCATATGTTGTCCCGCGGTAGAGTATGCAAATCCAAATTGGCTTGACTTACTCCATGCTGGAATGAGTACCATACAATCGTAAAAATCCGCTATGACACTCAACATCAAAATTGGGTGGCCGGAGTCTAAACAAAGGATAATGAACTTATGGTTGTAAGCAGCTTATTGGAAACAAAATAATTGGGTGTTTTTTAGTTTCATTTGCCTAAAGCCGGACGATGAAGCAATCATATATGAGAAGAATCGAGACATCAAATTTGTAAGTTAA

mRNA sequence

ATGATGTTTGGATCCAAAGATTATACACTCACCCTCCGTTCTTCTCCTTCAGATCCCAATTCCATGGGACATTCCTCAAACTCCGGAGGCGTTATGGCGGCGGCGGCAATGGGCGTCTTCATTTTGGTGCTGAGCGGAAGTCATTGCAACGTTGCTTCTCCAACTCCTTCCAGTTATGGCAACATCACCGTGGCCGCTGCGGCATCGATGTGGTGCGATGGCCGCACTGAAGAATGCCTCACTGGAGATCAACGCAATAACAATTGTGGCCCATATACTCGCCCGGACGATGAAGCAATCATATATGAGAAGAATCGAGACATCAAATTTGTAAGTTAA

Coding sequence (CDS)

ATGATGTTTGGATCCAAAGATTATACACTCACCCTCCGTTCTTCTCCTTCAGATCCCAATTCCATGGGACATTCCTCAAACTCCGGAGGCGTTATGGCGGCGGCGGCAATGGGCGTCTTCATTTTGGTGCTGAGCGGAAGTCATTGCAACGTTGCTTCTCCAACTCCTTCCAGTTATGGCAACATCACCGTGGCCGCTGCGGCATCGATGTGGTGCGATGGCCGCACTGAAGAATGCCTCACTGGAGATCAACGCAATAACAATTGTGGCCCATATACTCGCCCGGACGATGAAGCAATCATATATGAGAAGAATCGAGACATCAAATTTGTAAGTTAA

Protein sequence

MMFGSKDYTLTLRSSPSDPNSMGHSSNSGGVMAAAAMGVFILVLSGSHCNVASPTPSSYGNITVAAAASMWCDGRTEECLTGDQRNNNCGPYTRPDDEAIIYEKNRDIKFVS
Homology
[Close]
BLAST of CmaCh01G004190 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 22 MGHSSNSGGVMAAAAMGVFILVLSGSHCNVASPTPSSYGNITVAAAASMWCDGRTEECLT 81
          MGHSSNSGGVMAAAAMGVFILVLSGS CNVASPTPSSYGN TVAAAASMWCDGR EEC+T
Sbjct: 1  MGHSSNSGGVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVT 60

[Close]
BLAST of CmaCh01G004190 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-20
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 22 MGHSSNSGGVM---AAAAMGVFILVLSGSHCNVASPTPSSYGNITVAAAASMWCDGRTEE 81
          MGHSSNSG VM   AAAAMGVFIL+LSGSHC+VASPTPSSYGNITVAAAASMWCDGR EE
Sbjct: 1  MGHSSNSGAVMAAAAAAAMGVFILMLSGSHCSVASPTPSSYGNITVAAAASMWCDGRVEE 60

Query: 82 CLTGDQRNNNCGP 92
          C+T +    +  P
Sbjct: 61 CVTREDDGESAFP 73

[Close]
BLAST of CmaCh01G004190 vs. NCBI nr
Match: KAG6607014.1 (Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 7.9e-04
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 28 SGGVMAAAAMGVFILVLSGSHCNVASPTPSSYGNITVAAAASMWCDGRTEECLTGD 84
          +   M AA   + +L L+ S+ N AS + S++GN T A A S WCD RTEECL GD
Sbjct: 2  AAAAMMAAVAAIVVLTLAASNGNAASLSRSNFGNETDAGAPSTWCDRRTEECLVGD 57

The following BLAST results are available for this feature:
BLAST of CmaCh01G004190 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G004190 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G004190 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607071.11.4e-2193.33hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607070.12.1e-2076.71hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607014.17.9e-0448.21Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh01G004190 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G004190.1CmaCh01G004190.1mRNA