CmaCh01G002390 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G002390
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRibosomal protein
LocationCma_Chr01: 1097287 .. 1100527 (-)
RNA-Seq ExpressionCmaCh01G002390
SyntenyCmaCh01G002390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTATCATCTCCACATTCCATGGATAGAGAGACCCATTTCCAAATCCAAATCCAAATCAAAATCCAAAGCCTCTGCATGAGGTAGAAGAAGAATCTCCCAGCTTCACTCTCCATCAATGGCGGCCTGCACTTCCACTTCTCCTTCTTCCCTAATGCTCACTTACGCTTCTTCTTCTGTTTACCCCCAAGATCTCGCTTCCTCCATCGTCTCTTTCAATGGGAAATCCCGATTTTCCACCATCAAATCCTTCTCCTCCTGCCATTTCTTATGCAGGCCAAGGAGATCGGCCGATTGGATTTGTCTTAATTTCCAGAGAAGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGAATGTCGCGGAAGCGGAGGCGGAGGCGGAGGAGGGTGTCGCCGTGGGGGGAACGGATACCGTTGCTGCGCCTAAACCCAAGAAGGGGAAAGCCGCGTTGCCTCTTAAAAGAGATAGGGTATGTTTCAAAATCTTGTAAAATTTTGGTTGTTAGGATTGGATTGTGGGTTGTGTTGTGTTTTATGGGTTGTTCTTATAGGGGCTTGTTTTCGAGCTTAGAAATGGAGGTTGTTTTACAATGGTTGTGGAGGATTTCTGAGTGTTTTGATTGGTAGATAGGATGTCAAATGTGAACTAGTTTACATATTTTGTTGTCTTTCCATGTCTGAAATCAACTTGTTGTGTGATATGTCAGAGGAGATCCAAGAGATTCTTGGAGATTCAAAAACTAAGGGAAAACAAAAAAGAGTATGAGATCAAGACAGCAATATCTCTTCTCAAGGAAATGGCTAGCACAAAATTTGTAGAAACAGCAGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTAAGAGCAACCGTGAGTTTTTTTTTTGTATATAAATCTTGATCTCTTTATTGCTAAGGGAAGTTATGAAGAATATGCTTATCATGAGGTTATTTTGTTTGTATACTTTGTTGTAGGTAAATCTGCCTAAAGGAACAGGGCAAACTGTAAGAGTAGCTGTTCTTACTCAAGGTAGATACTTATAATACTTAAGCAGCCCTCTCTTTAATCGACACACAGTCGGCTATAGTAGCGTTTCTTATGCTATATGTTCGAAAATTCTATCGAAATCCACCCAGTTGAGTCTTTGCTTGTGGCTAAGGCTTTGTTTGGGAGTTGTTGGTGAAACAGTTTTATGATTTCGAGAACAAATTAAGTGTAAACATGTTGTAATAACTCATCCAAAGTTATTTTGTTCTTTACGTTGATGACTTGGAAGTTTTTGTGCATCTTGATTCCTTTTTATTGAGTGGTTATGTGAGATTCCACATCGGTTGGAGAGGGGAACGAAACATGGCTTATAAGGATGTGGAAACCTCTCCCTAGCAGACATATTTTAAAAACTTTGAGGGGAAGCTCGGAAGGGAAAGTCCAAATAGGACAATATTTGCTAGCGGTGGGCTTATGCAGTTACAAATGATATCAGAGCCAGACATGGGTGGTGTGCCATGAGGATGCTGGGCCCCAAGGGGGTGGATCGTGAGATCCCATGTCGGTTGGAGAAGGGAACGAAACATTGCTTATAAGGGTGTGGAAATCTCTCCCTAGCAGACGCGTTTTAAAACTTTGAGGGGAAGTCTGGAAGGGGAAGTCAAAAGAGGACAATATCTGCTAGCGGTGGACTTGAACTGTTATAGGTTACTTGTTACAAAACATTTACTGTTTAGTGCACAATTGTAAAGAGTTGAATTGAATATACAGGTGAGAAATTCGATGAAGCGAAAAATGCTGGTGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATTAAAGGAGGATTTATGGATTTTGACAAACTGATTGCTTCCCCAGACATGATGCCTAAGGTATTGCTATTGCTCTAACTAGATTGCTTCAATGTTGATCCTAGAAGATAAGAGACATGAACACAAACTTAACGTAGTAGCTACCCGGGGTTTATAGATCTATTTTTGGTCATCGATATATTTCCAGAATTTTGTATATCAAAGTTATCTTCTAATGACTGAAGCCAAAACTCTAAACCATTTTCTAAAACAGATATAGTCTACATATGCAAGGGCATTACCATCGGTGAATGCCGATACCTGCATTACTATATGATGATGTAGTTGATTTTCATAGTTGTCTCCTCCGCTCGTTTCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGAGGGCTCATGCCGAATCCAAAAGCCGGTACCGTAGCAACCAATCTGCCTCAGGTATCAATGATTTTTGTTTGGTATCTGCAGTGCATCCAGATTTCCTATATATCCATTAGAAAAGAAATACAGGACTTTACTTTATCCATCTAGCAACCATGATTTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGGATCGTTCACTTACCATTTGGGAAAGCCGACTTCAGTGAAGAAGACCTTCTTGTAAACTTGCTCGCAGCCATAGTATGTTATTCCCTTCTTATCTCCATAGCTGTTGGTCTCCAAAATGTGTCTAATTCATGTTTATAAGCTATTTTCTTTGAACTCTTGACAGAAATCAGTAGAAACCAATAAACCGACAGGTGCCAAAGGTGTATACTGGAAAAGCGCACACATATGCTCGTCGATGGGACCTTCAATTCGATTAAATATAAGGGAGATGCTCGACTTCAAGCTTTCCTCGACAGCTTGACAAATAACAAGCCTGTAAATTTCTTCTGTTTGTTGAATCAGCCTATGGGGGATCCACTACAATATAATGATGTCCAAATGTGAGCTGCACTGGAATGAAGATGATTGAAAAACTGGGATGAATAATGAGAAGATATCAGAAAATTATGATCACAGAAACAAGCATACTGCATAGTCTTCTATACTGACTGAATCTCTCTGTATTAATGGTGTTAAGTTCTTAATGATCTTTGATTAACGTCTTGGGTTTTAGGGAAAAAAATGATGAATGTACTGAAATGTAATGACTAGTTGATGCTCTTTTATTCTGTTCCTGTTTAGGTATTTTCGTCCTTATGAAAACGTGGAATCATTGCTCCTTCTGAGCAATCGTATTCTCAAACTTCTCATTGTATTATCTCTGGTTTCGAGCATATGCATCTGGAGTATTACTTTGAGCAATTTAACTCTAAATGAATCATCTCATTGTTAGAAAGCCCTG

mRNA sequence

CTTCTTATCATCTCCACATTCCATGGATAGAGAGACCCATTTCCAAATCCAAATCCAAATCAAAATCCAAAGCCTCTGCATGAGGTAGAAGAAGAATCTCCCAGCTTCACTCTCCATCAATGGCGGCCTGCACTTCCACTTCTCCTTCTTCCCTAATGCTCACTTACGCTTCTTCTTCTGTTTACCCCCAAGATCTCGCTTCCTCCATCGTCTCTTTCAATGGGAAATCCCGATTTTCCACCATCAAATCCTTCTCCTCCTGCCATTTCTTATGCAGGCCAAGGAGATCGGCCGATTGGATTTGTCTTAATTTCCAGAGAAGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGAATGTCGCGGAAGCGGAGGCGGAGGCGGAGGAGGGTGTCGCCGTGGGGGGAACGGATACCGTTGCTGCGCCTAAACCCAAGAAGGGGAAAGCCGCGTTGCCTCTTAAAAGAGATAGGAGGAGATCCAAGAGATTCTTGGAGATTCAAAAACTAAGGGAAAACAAAAAAGAGTATGAGATCAAGACAGCAATATCTCTTCTCAAGGAAATGGCTAGCACAAAATTTGTAGAAACAGCAGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTAAGAGCAACCGTAAATCTGCCTAAAGGAACAGGGCAAACTGTAAGAGTAGCTGTTCTTACTCAAGGTGAGAAATTCGATGAAGCGAAAAATGCTGGTGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATTAAAGGAGGATTTATGGATTTTGACAAACTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGAGGGCTCATGCCGAATCCAAAAGCCGGTACCGTAGCAACCAATCTGCCTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGGATCGTTCACTTACCATTTGGGAAAGCCGACTTCAGTGAAGAAGACCTTCTTGTAAACTTGCTCGCAGCCATAAAATCAGTAGAAACCAATAAACCGACAGGTGCCAAAGGTGTATACTGGAAAAGCGCACACATATGCTCGTCGATGGGACCTTCAATTCGATTAAATATAAGGGAGATGCTCGACTTCAAGCTTTCCTCGACAGCTTGACAAATAACAAGCCTGTAAATTTCTTCTGTTTGTTGAATCAGCCTATGGGGGATCCACTACAATATAATGATGTCCAAATGTGAGCTGCACTGGAATGAAGATGATTGAAAAACTGGGATGAATAATGAGAAGATATCAGAAAATTATGATCACAGAAACAAGCATACTGCATAGTCTTCTATACTGACTGAATCTCTCTGTATTAATGGTGTTAAGTTCTTAATGATCTTTGATTAACGTCTTGGGTTTTAGGGAAAAAAATGATGAATGTACTGAAATGTAATGACTAGTTGATGCTCTTTTATTCTGTTCCTGTTTAGGTATTTTCGTCCTTATGAAAACGTGGAATCATTGCTCCTTCTGAGCAATCGTATTCTCAAACTTCTCATTGTATTATCTCTGGTTTCGAGCATATGCATCTGGAGTATTACTTTGAGCAATTTAACTCTAAATGAATCATCTCATTGTTAGAAAGCCCTG

Coding sequence (CDS)

ATGGCGGCCTGCACTTCCACTTCTCCTTCTTCCCTAATGCTCACTTACGCTTCTTCTTCTGTTTACCCCCAAGATCTCGCTTCCTCCATCGTCTCTTTCAATGGGAAATCCCGATTTTCCACCATCAAATCCTTCTCCTCCTGCCATTTCTTATGCAGGCCAAGGAGATCGGCCGATTGGATTTGTCTTAATTTCCAGAGAAGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGAATGTCGCGGAAGCGGAGGCGGAGGCGGAGGAGGGTGTCGCCGTGGGGGGAACGGATACCGTTGCTGCGCCTAAACCCAAGAAGGGGAAAGCCGCGTTGCCTCTTAAAAGAGATAGGAGGAGATCCAAGAGATTCTTGGAGATTCAAAAACTAAGGGAAAACAAAAAAGAGTATGAGATCAAGACAGCAATATCTCTTCTCAAGGAAATGGCTAGCACAAAATTTGTAGAAACAGCAGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTAAGAGCAACCGTAAATCTGCCTAAAGGAACAGGGCAAACTGTAAGAGTAGCTGTTCTTACTCAAGGTGAGAAATTCGATGAAGCGAAAAATGCTGGTGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATTAAAGGAGGATTTATGGATTTTGACAAACTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGAGGGCTCATGCCGAATCCAAAAGCCGGTACCGTAGCAACCAATCTGCCTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGGATCGTTCACTTACCATTTGGGAAAGCCGACTTCAGTGAAGAAGACCTTCTTGTAAACTTGCTCGCAGCCATAAAATCAGTAGAAACCAATAAACCGACAGGTGCCAAAGGTGTATACTGGAAAAGCGCACACATATGCTCGTCGATGGGACCTTCAATTCGATTAAATATAAGGGAGATGCTCGACTTCAAGCTTTCCTCGACAGCTTGA

Protein sequence

MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADWICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRDRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA
Homology
[Close]
BLAST of CmaCh01G002390 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 2.1e-122
Identity = 242/352 (68.75%), Postives = 277/352 (78.69%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAAC   + SSLML YA++S   QDL  +   F+  S      SF     L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRDR 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
            C    R + H  IV+A+AAEA++     + EE +    T  +  PKPKKGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEY++ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
            KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFT 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFK 353
           EEDLL+N LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK
Sbjct: 301 EEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFK 341

[Close]
BLAST of CmaCh01G002390 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 1.4e-118
Identity = 238/358 (66.48%), Postives = 277/358 (77.37%), Query Frame = 0 

Query: 6   STSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLC--RPRRSADWICL 65
           + +P SL L YASSS   Q   S    F        + + S C      R R    W+  
Sbjct: 3   TAAPPSLSLCYASSSFQYQQDPSFQTHFK-----PLLLNSSLCRLTLNQRERSCLKWVDF 62

Query: 66  NFQRRARHHV---IVAALAAEANVAEAEAEAEEGVAVGGTDTVAAP-KPKKGKAALPLKR 125
             Q+++   V   ++AA+AAEA VA+ E E  E    GG  T+ +P KPKKGKAALPLK 
Sbjct: 63  TSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGES---GGVATLPSPTKPKKGKAALPLKS 122

Query: 126 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 185
           DR RSKRFLEIQKLRE K+EY++KTA+SL+K+M+STKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 123 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLR 182

Query: 186 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 245
           ATV+LPKGTG+TV++AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFMDFDKLIA+ DM
Sbjct: 183 ATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDM 242

Query: 246 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 305
           M KVASLG++LGPRGLMP PKAGTV  N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F
Sbjct: 243 MAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNF 302

Query: 306 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
            EEDLL+NL A IKSVETNKPTGAKGVYWKSAHI SSMGPSIRLNIREMLD+K  S A
Sbjct: 303 EEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

[Close]
BLAST of CmaCh01G002390 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.2e-78
Identity = 149/234 (63.68%), Postives = 187/234 (79.91%), Query Frame = 0 

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  + Q   EN K YE   A++LLKE+A+ KF ETAEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTG+TVRVAV+T+GEK  EA NAGAD+VG E+LIE+I  G MDF+ LIA+PDMM
Sbjct: 63  TVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMM 122

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVA LG+ LGPRGLMP+PK GTV T+L  AIAEFK GK+E+RAD+TGIVH+ FGKA FS
Sbjct: 123 PKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFS 182

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLS 355
            EDLLVNL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++I  + D KL+
Sbjct: 183 AEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKLA 235

[Close]
BLAST of CmaCh01G002390 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 8.8e-76
Identity = 143/237 (60.34%), Postives = 186/237 (78.48%), Query Frame = 0 

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  E+Q   E+ +EY    A+SLLKE A+ KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV LPKGTGQ VRVAV+ +GEK  EA NAGAD+ G E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           P+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS
Sbjct: 123 PQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFS 182

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
            EDLLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + D+KL+  A
Sbjct: 183 PEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]
BLAST of CmaCh01G002390 vs. ExPASy Swiss-Prot
Match: Q8YLJ7 (50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplA PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.0e-75
Identity = 143/237 (60.34%), Postives = 186/237 (78.48%), Query Frame = 0 

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  E+Q   E+ +EY    A+ LLKE A+ KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV LPKGTGQ VRVAV+ +GEK  EA NAGAD+VG E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           P+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS
Sbjct: 123 PQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFS 182

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
            EDLLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + D+KL+  A
Sbjct: 183 PEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]
BLAST of CmaCh01G002390 vs. ExPASy TrEMBL
Match: A0A6J1KEE5 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111493089 PE=3 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 7.0e-193
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 357

[Close]
BLAST of CmaCh01G002390 vs. ExPASy TrEMBL
Match: A0A6J1G9U2 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1)

HSP 1 Score: 679.5 bits (1752), Expect = 7.7e-192
Identity = 355/357 (99.44%), Postives = 355/357 (99.44%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDL SSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL STA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]
BLAST of CmaCh01G002390 vs. ExPASy TrEMBL
Match: A0A6J1DFM3 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1)

HSP 1 Score: 614.4 bits (1583), Expect = 3.0e-172
Identity = 327/361 (90.58%), Postives = 338/361 (93.63%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MA CTSTSPSSLMLT ASSSV+PQDLASSIVSF GK +FSTIK+FSS HFLCRPRRS DW
Sbjct: 1   MATCTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60

Query: 61  ICLNFQRRARHHVIVAALAAE----ANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALP 120
           I L+FQRRARHHVIVAALAAE        EAEA+ EEG+  G   TVAAPKPKKGKAALP
Sbjct: 61  IFLHFQRRARHHVIVAALAAEXXXXXXXXEAEAKEEEGLD-GAAATVAAPKPKKGKAALP 120

Query: 121 LKRDRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180
           LKRDRRRSKRFLEIQKLRENKKEY++KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ
Sbjct: 121 LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180

Query: 181 QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240
           QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS
Sbjct: 181 QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240

Query: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300
           PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK
Sbjct: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300

Query: 301 ADFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSST 358
           ADFSEEDLL+NLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKL S+
Sbjct: 301 ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 360

[Close]
BLAST of CmaCh01G002390 vs. ExPASy TrEMBL
Match: A0A5D3BLK6 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00110 PE=3 SV=1)

HSP 1 Score: 600.9 bits (1548), Expect = 3.5e-168
Identity = 320/358 (89.39%), Postives = 335/358 (93.58%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSV-YPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSAD 60
           MAACTST PSSLMLT ASSSV  PQDLASSIVSF GK +  TIKSFSS +FLCR RRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKR 120
           W+ LNFQRRAR HVIVAALAAEANVAE EAE EE VA   T T  APKPKKGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++ TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300

Query: 301 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
           SEEDLL+NLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSIRLNIR+MLDFKL S+A
Sbjct: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]
BLAST of CmaCh01G002390 vs. ExPASy TrEMBL
Match: A0A1S3CFH3 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1)

HSP 1 Score: 600.9 bits (1548), Expect = 3.5e-168
Identity = 320/358 (89.39%), Postives = 335/358 (93.58%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSV-YPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSAD 60
           MAACTST PSSLMLT ASSSV  PQDLASSIVSF GK +  TIKSFSS +FLCR RRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKR 120
           W+ LNFQRRAR HVIVAALAAEANVAE EAE EE VA   T T  APKPKKGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++ TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300

Query: 301 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
           SEEDLL+NLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSIRLNIR+MLDFKL S+A
Sbjct: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]
BLAST of CmaCh01G002390 vs. NCBI nr
Match: XP_022998464.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 682.9 bits (1761), Expect = 1.4e-192
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 357

[Close]
BLAST of CmaCh01G002390 vs. NCBI nr
Match: XP_022948661.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 679.5 bits (1752), Expect = 1.6e-191
Identity = 355/357 (99.44%), Postives = 355/357 (99.44%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDL SSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL STA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]
BLAST of CmaCh01G002390 vs. NCBI nr
Match: KAG7036595.1 (50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 677.2 bits (1746), Expect = 7.9e-191
Identity = 354/357 (99.16%), Postives = 355/357 (99.44%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCH LCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL STA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]
BLAST of CmaCh01G002390 vs. NCBI nr
Match: XP_023525415.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 674.9 bits (1740), Expect = 3.9e-190
Identity = 352/357 (98.60%), Postives = 354/357 (99.16%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEA+ EAEEGVAVGGTD VAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEADTEAEEGVAVGGTDAVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL STA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]
BLAST of CmaCh01G002390 vs. NCBI nr
Match: KAG6606890.1 (50S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 657.5 bits (1695), Expect = 6.5e-185
Identity = 342/345 (99.13%), Postives = 343/345 (99.42%), Query Frame = 0 

Query: 13  MLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADWICLNFQRRARHH 72
           MLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCH LCRPRRSADWICLNFQRRARHH
Sbjct: 1   MLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADWICLNFQRRARHH 60

Query: 73  VIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRDRRRSKRFLEIQK 132
           VIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRDRRRSKRFLEIQK
Sbjct: 61  VIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRDRRRSKRFLEIQK 120

Query: 133 LRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTV 192
           LRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTV
Sbjct: 121 LRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTV 180

Query: 193 RVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASLGKLLGP 252
           RVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMMPKVASLGKLLGP
Sbjct: 181 RVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGP 240

Query: 253 RGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAI 312
           RGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAI
Sbjct: 241 RGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAI 300

Query: 313 KSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 358
           KSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL STA
Sbjct: 301 KSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 345

[Close]
BLAST of CmaCh01G002390 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 440.3 bits (1131), Expect = 1.5e-123
Identity = 242/352 (68.75%), Postives = 277/352 (78.69%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAAC   + SSLML YA++S   QDL  +   F+  S      SF     L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRDR 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
            C    R + H  IV+A+AAEA++     + EE +    T  +  PKPKKGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEY++ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
            KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFT 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFK 353
           EEDLL+N LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK
Sbjct: 301 EEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFK 341

[Close]
BLAST of CmaCh01G002390 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 298.9 bits (764), Expect = 5.4e-81
Identity = 179/296 (60.47%), Postives = 210/296 (70.95%), Query Frame = 0 

Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAAC   + SSLML YA++S   QDL  +   F+  S      SF     L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRDR 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
            C    R + H  IV+A+AAEA++     + EE +    T  +  PKPKKGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEY++ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 297
            KVA LGK+LGPRGLMPNPKAGTV  N+PQ+    ++GK+     K G+     GK
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHLGK 282

[Close]
BLAST of CmaCh01G002390 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-39
Identity = 89/224 (39.73%), Postives = 137/224 (61.16%), Query Frame = 0 

Query: 132 KLRENKKE-YEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ 191
           +L+  KK  +++  AI  +K  A  KF ET EAH RL I+   ++  +R T+ LP    +
Sbjct: 179 ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK 238

Query: 192 TVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQI-KGGFMDFDKLIASPDMMPKVASLGKL 251
            V+VA   +G   ++AK AGAD+VGG +LIE+I K G +DFD+ +A+P MMP+V  + ++
Sbjct: 239 DVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRI 298

Query: 252 LGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLL 311
           L   GLMPNPK G+V  ++ +A+ + K G  ++R DKT I+H+P GK  FSEE L  N+ 
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358

Query: 312 AAIKSVETNKPTGAKGV-----YWKSAHICSSMGPSIRLNIREM 349
           A + ++   KP G K       Y  + H+CS+MG    ++I+ +
Sbjct: 359 AFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:
BLAST of CmaCh01G002390 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LY662.1e-12268.7550S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ... [more]
Q9LE951.4e-11866.4850S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=... [more]
B0JNQ53.2e-7863.6850S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G... [more]
Q3MA188.8e-7660.3450S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)... [more]
Q8YLJ72.0e-7560.3450S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)... [more]
BLAST of CmaCh01G002390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KEE57.0e-193100.00Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111493089 PE=3 SV=1[more]
A0A6J1G9U27.7e-19299.44Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1[more]
A0A6J1DFM33.0e-17290.58Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1[more]
A0A5D3BLK63.5e-16889.39Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00... [more]
A0A1S3CFH33.5e-16889.39Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1[more]
BLAST of CmaCh01G002390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022998464.11.4e-192100.0050S ribosomal protein L1, chloroplastic-like [Cucurbita maxima][more]
XP_022948661.11.6e-19199.4450S ribosomal protein L1, chloroplastic-like [Cucurbita moschata][more]
KAG7036595.17.9e-19199.1650S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_023525415.13.9e-19098.6050S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG6606890.16.5e-18599.1350S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. ... [more]
BLAST of CmaCh01G002390 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G63490.11.5e-12368.75Ribosomal protein L1p/L10e family [more]
AT3G63490.25.4e-8160.47Ribosomal protein L1p/L10e family [more]
AT2G42710.12.3e-3939.73Ribosomal protein L1p/L10e family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 187..278
e-value: 1.5E-82
score: 278.1
NoneNo IPR availableGENE3D3.30.190.20coord: 140..343
e-value: 1.5E-82
score: 278.1
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 137..350
NoneNo IPR availablePANTHERPTHR23105:SF110MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGEcoord: 137..350
IPR005878Ribosomal protein L1, bacterial-typeTIGRFAMTIGR01169TIGR01169coord: 123..347
e-value: 5.8E-95
score: 315.0
IPR005878Ribosomal protein L1, bacterial-typeHAMAPMF_01318_BRibosomal_L1_Bcoord: 121..348
score: 39.691971
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 149..339
e-value: 2.6E-47
score: 161.2
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinCDDcd00403Ribosomal_L1coord: 142..343
e-value: 2.99845E-74
score: 226.682
IPR023673Ribosomal protein L1, conserved sitePROSITEPS01199RIBOSOMAL_L1coord: 240..258
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 126..345

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G002390.1CmaCh01G002390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000470 maturation of LSU-rRNA
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding