CmaCh01G000040 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G000040
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTransmembrane protein, putative
LocationCma_Chr01: 12096 .. 12596 (-)
RNA-Seq ExpressionCmaCh01G000040
SyntenyCmaCh01G000040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAATTAGCAGTTCGTAGAGAGACTATTGAAGATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGAGTCAGTATATTCATATGCATATTTGGTTTCCTTTGCTTTACCTGCTTGTTTCTTACACATAATACGCGGCATGGTTGGGTCTCAGCTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG

mRNA sequence

TAAATTAGCAGTTCGTAGAGAGACTATTGAAGATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG

Coding sequence (CDS)

ATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG

Protein sequence

MKKKGGFVLVLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLRPQTDSEL
Homology
BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A6J1G9K3 (uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC111452199 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.3e-52
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0

Query: 15  MVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRKVVNRAVTCLFPPKI 74
           MV+VVGVGKADEEAPNNIEETVGRVISASAASS PPPNSYWEEVRKVVNRAVTCLFPPKI
Sbjct: 1   MVIVVGVGKADEEAPNNIEETVGRVISASAASS-PPPNSYWEEVRKVVNRAVTCLFPPKI 60

Query: 75  DFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLRPQTDSEL 128
           DFRPGKPVEDGQVNGN NMKESITKSFHTTKQMVEDSAKAAAQTLRPQ DSEL
Sbjct: 61  DFRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPDSEL 112

BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A0A0L904 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 0

Query: 2   KKKGGFVL-VLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 61
           KKK   VL +L+L ++V+VG+ KA+EEA NNI          S  S+P PPNSYWEEVRK
Sbjct: 5   KKKVKLVLRMLLLLLLVLVGIVKANEEAANNI---------YSETSTPNPPNSYWEEVRK 64

Query: 62  VVNRAVTCLFPPKIDFRPGKPVEDGQ----VNGNVNMKESITKSFHTTKQMVEDSAKAAA 121
           VVN+A T LFPPKIDFRPGK VED       NGNVN+KE++TKSF  TK+MVEDSAKAAA
Sbjct: 65  VVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAA 124

Query: 122 QTL-RPQTDSEL 128
           QTL +P   SEL
Sbjct: 125 QTLQKPPPHSEL 127

BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A5A7VE77 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00220 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 0

Query: 2   KKKGGFVL-VLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 61
           KKK   VL +L+L ++++VG+  A++EA NN+          S  S+P PPNSYWEEVRK
Sbjct: 6   KKKMKVVLRMLLLLLLILVGIAMANDEAANNV---------YSETSTPNPPNSYWEEVRK 65

Query: 62  VVNRAVTCLFPPKIDFRPGKPVED--GQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQT 121
           VVN+A + LFPPKIDFRPGK VED  G    + N+KE++TKSF  TK+MVEDSAKAAAQT
Sbjct: 66  VVNKAYSYLFPPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQT 125

Query: 122 L-RPQTDSEL 128
           L +P   SEL
Sbjct: 126 LQKPPPHSEL 126

BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A1S3CDE0 (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 0

Query: 2   KKKGGFVL-VLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 61
           KKK   VL +L+L ++++VG+  A++EA NN+          S  S+P PPNSYWEEVRK
Sbjct: 6   KKKMKVVLRMLLLLLLILVGIAMANDEAANNV---------YSETSTPNPPNSYWEEVRK 65

Query: 62  VVNRAVTCLFPPKIDFRPGKPVED--GQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQT 121
           VVN+A + LFPPKIDFRPGK VED  G    + N+KE++TKSF  TK+MVEDSAKAAAQT
Sbjct: 66  VVNKAYSYLFPPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQT 125

Query: 122 L-RPQTDSEL 128
           L +P   SEL
Sbjct: 126 LQKPPPHSEL 126

BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A6J1D2A4 (uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016933 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.6e-11
Identity = 53/144 (36.81%), Postives = 77/144 (53.47%), Query Frame = 0

Query: 2   KKKGGFVLVLVLWMVVVVGVG---KADEEAPN-NIEETVG-------------------- 61
           ++   F  VL+L   V++  G   KA ++  N ++EE  G                    
Sbjct: 5   RRSANFAFVLLLCTTVIISAGVAAKAGDDHDNLSVEEEAGAARIEGEGRGRSWVEEALVD 64

Query: 62  --RVISASAASSPPPPNSYWEEVRK-VVNRAVTCLFPPKIDFRPGK--PVEDGQVNGNVN 117
              V + ++A+ P     YW+ +R  V++  +  LFPPKIDFRPGK    EDG  +GN N
Sbjct: 65  AISVFTVTSAAPPCATPHYWDRLRTWVLDPLLAYLFPPKIDFRPGKADDDEDGGGHGNEN 124

BLAST of CmaCh01G000040 vs. NCBI nr
Match: KAG6571257.1 (hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571261.1 hypothetical protein SDJN03_30176, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.8 bits (595), Expect = 8.2e-58
Identity = 119/127 (93.70%), Postives = 120/127 (94.49%), Query Frame = 0

Query: 1   MKKKGGFVLVLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 60
           M KKGGFVLVLVLWMVVVVGVGKADEEA NNIEETVGRVISASAASSP PPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLR 120
           VVNRAVTCLFPPKIDFR G PVEDGQVNGN NMKESITKSFHTTKQMVEDSAKAAAQTL+
Sbjct: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ 120

Query: 121 PQTDSEL 128
           PQ DSEL
Sbjct: 121 PQPDSEL 127

BLAST of CmaCh01G000040 vs. NCBI nr
Match: KAG6571254.1 (hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-57
Identity = 118/127 (92.91%), Postives = 119/127 (93.70%), Query Frame = 0

Query: 1   MKKKGGFVLVLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 60
           M KKGGFVLVLVLWMVVVVGVGKADEEA NNIEE VGRVISASAASSP PPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEEIVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLR 120
           VVNRAVTCLFPPKIDFRPG PVEDGQVNGN NMKESITKSFHTTKQMVEDSA AAAQTL+
Sbjct: 61  VVNRAVTCLFPPKIDFRPGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSANAAAQTLQ 120

Query: 121 PQTDSEL 128
           PQ DSEL
Sbjct: 121 PQPDSEL 127

BLAST of CmaCh01G000040 vs. NCBI nr
Match: KAG6571255.1 (hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571258.1 hypothetical protein SDJN03_30173, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.1 bits (588), Expect = 5.3e-57
Identity = 117/127 (92.13%), Postives = 120/127 (94.49%), Query Frame = 0

Query: 1   MKKKGGFVLVLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 60
           M KKGGFVLVLVLWMVVVVGVGKAD+EA NNIEETVGRVISASAASSP PPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLR 120
           VVNRAVTCLFPPKIDFR G PVEDGQVNGN NMKESITKSFHTTKQMV+DSAKAAAQTL+
Sbjct: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQ 120

Query: 121 PQTDSEL 128
           PQ DSEL
Sbjct: 121 PQPDSEL 127

BLAST of CmaCh01G000040 vs. NCBI nr
Match: KAG6571256.1 (hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 117/127 (92.13%), Postives = 119/127 (93.70%), Query Frame = 0

Query: 1   MKKKGGFVLVLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 60
           M KKGGFVLVLVLWMVVVVGVGKADEEA NNIEETVGRVISASAASSP PPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLR 120
           VVNRAVTCLFP KIDFR G PVEDGQVNGN NMKESITKSFHTTKQMVEDSAKA+AQTL+
Sbjct: 61  VVNRAVTCLFPQKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKASAQTLQ 120

Query: 121 PQTDSEL 128
           PQ DSEL
Sbjct: 121 PQPDSEL 127

BLAST of CmaCh01G000040 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata])

HSP 1 Score: 214.2 bits (544), Expect = 6.7e-52
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0

Query: 15  MVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRKVVNRAVTCLFPPKI 74
           MV+VVGVGKADEEAPNNIEETVGRVISASAASS PPPNSYWEEVRKVVNRAVTCLFPPKI
Sbjct: 1   MVIVVGVGKADEEAPNNIEETVGRVISASAASS-PPPNSYWEEVRKVVNRAVTCLFPPKI 60

Query: 75  DFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLRPQTDSEL 128
           DFRPGKPVEDGQVNGN NMKESITKSFHTTKQMVEDSAKAAAQTLRPQ DSEL
Sbjct: 61  DFRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPDSEL 112

BLAST of CmaCh01G000040 vs. TAIR 10
Match: AT1G16850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 4.6e-06
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 53  SYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSA 112
           +YW +VR+ ++R  +  FPP   F  GK   D  +    NMKE+ T+SF  +K  VE++A
Sbjct: 60  NYWAKVRETLDRGQSHFFPPNTYF-TGK--NDAPMGAGENMKEAATRSFEHSKATVEEAA 119

Query: 113 KAAAQTL 120
           ++AA+ +
Sbjct: 120 RSAAEVV 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G9K33.3e-5296.46uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC1114521... [more]
A0A0A0L9042.3e-2962.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1[more]
A0A5A7VE772.6e-2556.92Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3CDE02.6e-2556.92uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=... [more]
A0A6J1D2A43.6e-1136.81uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
Match NameE-valueIdentityDescription
KAG6571257.18.2e-5893.70hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571254.11.8e-5792.91hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571255.15.3e-5792.13hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571256.11.5e-5692.13hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022948557.16.7e-5296.46uncharacterized protein LOC111452199 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT1G16850.14.6e-0637.31unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..127
NoneNo IPR availablePANTHERPTHR35463TRANSMEMBRANE PROTEINcoord: 8..119
NoneNo IPR availablePANTHERPTHR35463:SF11BNAC05G12860D PROTEINcoord: 8..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G000040.1CmaCh01G000040.1mRNA