CmaCh01G000040 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TAAATTAGCAGTTCGTAGAGAGACTATTGAAGATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGAGTCAGTATATTCATATGCATATTTGGTTTCCTTTGCTTTACCTGCTTGTTTCTTACACATAATACGCGGCATGGTTGGGTCTCAGCTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG TAAATTAGCAGTTCGTAGAGAGACTATTGAAGATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG ATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG MKKKGGFVLVLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLRPQTDSEL Homology
BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A6J1G9K3 (uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC111452199 PE=4 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 3.3e-52 Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0
BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A0A0L904 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29 Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 0
BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A5A7VE77 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00220 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25 Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 0
BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A1S3CDE0 (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25 Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 0
BLAST of CmaCh01G000040 vs. ExPASy TrEMBL
Match: A0A6J1D2A4 (uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016933 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 3.6e-11 Identity = 53/144 (36.81%), Postives = 77/144 (53.47%), Query Frame = 0
BLAST of CmaCh01G000040 vs. NCBI nr
Match: KAG6571257.1 (hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571261.1 hypothetical protein SDJN03_30176, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 233.8 bits (595), Expect = 8.2e-58 Identity = 119/127 (93.70%), Postives = 120/127 (94.49%), Query Frame = 0
BLAST of CmaCh01G000040 vs. NCBI nr
Match: KAG6571254.1 (hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 232.6 bits (592), Expect = 1.8e-57 Identity = 118/127 (92.91%), Postives = 119/127 (93.70%), Query Frame = 0
BLAST of CmaCh01G000040 vs. NCBI nr
Match: KAG6571255.1 (hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571258.1 hypothetical protein SDJN03_30173, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 231.1 bits (588), Expect = 5.3e-57 Identity = 117/127 (92.13%), Postives = 120/127 (94.49%), Query Frame = 0
BLAST of CmaCh01G000040 vs. NCBI nr
Match: KAG6571256.1 (hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56 Identity = 117/127 (92.13%), Postives = 119/127 (93.70%), Query Frame = 0
BLAST of CmaCh01G000040 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata]) HSP 1 Score: 214.2 bits (544), Expect = 6.7e-52 Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0
BLAST of CmaCh01G000040 vs. TAIR 10
Match: AT1G16850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 4.6e-06 Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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