CmaCh00G003340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G003340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	pathogenesis-related genes transcriptional activator PTI6-like
Location	Cma_Chr00: 27477746 .. 27478540 (+)
RNA-Seq Expression	CmaCh00G003340
Synteny	CmaCh00G003340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAGTTTGTTCCGGCGGAATTAGGTTCAGAGAAATTCGAACCACCACCCACAAACCGGCGACGGAGACCAAATTGGTTCGAATTTCGTTCACCGACGGCGACGCCACCGATTCCTCGAGTGGGGAAGACGAAGAGACAATCTCCATCCGCCACGTCAAACGCCATGTGACTGAGATCAGGCTTCTCACTCGTAGTTCCAAAAAATCGCCGCTGAAATCGGGAGCTGATCCGCTGCGTAACTCGAAGTGTCATAGAAAGTTCCGGGGAGTTAGGCGACGGCCGTGGGGGAAATGGGCTGCCGAAATCAGAGACCCTTTCCGGCGGACTAGAGTTTGGCTTGGAACCTACGACACGCCGGAGGAAGCTGCCGTCGTGTACGACCAAGCCGCCGTCCGCCTTAAAGGCCCCAACGCTCTAACAAATTTCGCCGAAGCTCCCAATTCCAAAAGTACCGTTGCCACACATTTCACTCCGCCGCCGCTGGCTGTGGCGATTTCCGATAGAGAAGAATCTCGGAGTCTGTGCTCTCCGACTTCCGTTTTGAGATTAGAAGAACAAATTTGGAGACCCATTGAGCATGTAAGCGAAGAGTCAGCATTAGAAATGGAATTAAATTGGTTATATGATCGGAATTCCAACAGTTTGTTGTTCAATTCAAGAAGCCCACAGCCCATAAATTCCGACGAAATGGAAGATTTCGGCGACATTCCGATGGATTTCGAATCATGCAAATGGGACGTAGAGAATTATTTTCAAGATCCAACCTTTAGTATTTCACTCACTCACTGA

mRNA sequence

ATGGGTCGAGTTTGTTCCGGCGGAATTAGGTTCAGAGAAATTCGAACCACCACCCACAAACCGGCGACGGAGACCAAATTGGTTCGAATTTCGTTCACCGACGGCGACGCCACCGATTCCTCGAGTGGGGAAGACGAAGAGACAATCTCCATCCGCCACGTCAAACGCCATGTGACTGAGATCAGGCTTCTCACTCGTAGTTCCAAAAAATCGCCGCTGAAATCGGGAGCTGATCCGCTGCGTAACTCGAAGTGTCATAGAAAGTTCCGGGGAGTTAGGCGACGGCCGTGGGGGAAATGGGCTGCCGAAATCAGAGACCCTTTCCGGCGGACTAGAGTTTGGCTTGGAACCTACGACACGCCGGAGGAAGCTGCCGTCGTGTACGACCAAGCCGCCGTCCGCCTTAAAGGCCCCAACGCTCTAACAAATTTCGCCGAAGCTCCCAATTCCAAAAGTACCGTTGCCACACATTTCACTCCGCCGCCGCTGGCTGTGGCGATTTCCGATAGAGAAGAATCTCGGAGTCTGTGCTCTCCGACTTCCGTTTTGAGATTAGAAGAACAAATTTGGAGACCCATTGAGCATGTAAGCGAAGAGTCAGCATTAGAAATGGAATTAAATTGGTTATATGATCGGAATTCCAACAGTTTGTTGTTCAATTCAAGAAGCCCACAGCCCATAAATTCCGACGAAATGGAAGATTTCGGCGACATTCCGATGGATTTCGAATCATGCAAATGGGACGTAGAGAATTATTTTCAAGATCCAACCTTTAGTATTTCACTCACTCACTGA

Coding sequence (CDS)

ATGGGTCGAGTTTGTTCCGGCGGAATTAGGTTCAGAGAAATTCGAACCACCACCCACAAACCGGCGACGGAGACCAAATTGGTTCGAATTTCGTTCACCGACGGCGACGCCACCGATTCCTCGAGTGGGGAAGACGAAGAGACAATCTCCATCCGCCACGTCAAACGCCATGTGACTGAGATCAGGCTTCTCACTCGTAGTTCCAAAAAATCGCCGCTGAAATCGGGAGCTGATCCGCTGCGTAACTCGAAGTGTCATAGAAAGTTCCGGGGAGTTAGGCGACGGCCGTGGGGGAAATGGGCTGCCGAAATCAGAGACCCTTTCCGGCGGACTAGAGTTTGGCTTGGAACCTACGACACGCCGGAGGAAGCTGCCGTCGTGTACGACCAAGCCGCCGTCCGCCTTAAAGGCCCCAACGCTCTAACAAATTTCGCCGAAGCTCCCAATTCCAAAAGTACCGTTGCCACACATTTCACTCCGCCGCCGCTGGCTGTGGCGATTTCCGATAGAGAAGAATCTCGGAGTCTGTGCTCTCCGACTTCCGTTTTGAGATTAGAAGAACAAATTTGGAGACCCATTGAGCATGTAAGCGAAGAGTCAGCATTAGAAATGGAATTAAATTGGTTATATGATCGGAATTCCAACAGTTTGTTGTTCAATTCAAGAAGCCCACAGCCCATAAATTCCGACGAAATGGAAGATTTCGGCGACATTCCGATGGATTTCGAATCATGCAAATGGGACGTAGAGAATTATTTTCAAGATCCAACCTTTAGTATTTCACTCACTCACTGA

Protein sequence

MGRVCSGGIRFREIRTTTHKPATETKLVRISFTDGDATDSSSGEDEETISIRHVKRHVTEIRLLTRSSKKSPLKSGADPLRNSKCHRKFRGVRRRPWGKWAAEIRDPFRRTRVWLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVATHFTPPPLAVAISDREESRSLCSPTSVLRLEEQIWRPIEHVSEESALEMELNWLYDRNSNSLLFNSRSPQPINSDEMEDFGDIPMDFESCKWDVENYFQDPTFSISLTH

Homology

[Close]

BLAST of CmaCh00G003340 vs. ExPASy Swiss-Prot
Match: O04682 (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum OX=4081 GN=PTI6 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-35
Identity = 84/159 (52.83%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 26  KLVRISFTDGDATDSSSGEDEETISIRHVKRHVTEIRLLTRSSKKSPLK-SGADPLRNSK 85
           ++VRI  TD DATDSS  +DE   ++R VKRHVTEI L+  +      K     P  +  
Sbjct: 36  RVVRIILTDADATDSS--DDEGRNTVRRVKRHVTEINLMPSTKSIGDRKRRSVSPDSDVT 95

Query: 86  CHRKFRGVRRRPWGKWAAEIRDPFRRTRVWLGTYDTPEEAAVVYDQAAVRLKGPNALTNF 145
             +KFRGVR+RPWG+WAAEIRDP R  RVWLGTYDTPEEAAVVYD+AAV+LKGP+A+TNF
Sbjct: 96  RRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNF 155

Query: 146 AEAPNSKSTVATHFTPPPLAVAISDREESRSLCSPTSVL 184
             +  ++ TV    T         D+ E+    SPTSVL
Sbjct: 156 PVSTTAEVTVTVTETETESVADGGDKSENDVALSPTSVL 192

[Close]

BLAST of CmaCh00G003340 vs. ExPASy Swiss-Prot
Match: Q9SUE3 (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN=CRF4 PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-31
Identity = 102/236 (43.22%), Postives = 136/236 (57.63%), Query Frame = 0


Query: 14  IRTTTHKPATETK--------LVRISFTDGDATDSSSGEDEETISIRHVKRHVTEIRLLT 73
           IR  T K + E K        LVR+S TD DATDSSS E+E     R VKR + EIR+  
Sbjct: 21  IRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVKRLINEIRVEP 80

Query: 74  RSS-----KKSPLK---------SGADPLRNSKCHRKFRGVRRRPWGKWAAEIRDPFRRT 133
            SS       SP K         +   P  + +  +K+RGVR+RPWGKWAAEIRDP +R 
Sbjct: 81  SSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRR 140

Query: 134 RVWLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVATHFTPPP-LAVAISD- 193
           R+WLGT+ T EEAA+VYD AA++L+GP+ALTNF   P  +        P   ++V+IS+ 
Sbjct: 141 RIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQEQEPESNMSVSISES 200

Query: 194 REESRSLCSPTSVLRL-----EEQIWRPIEHVSEESALEME---LNW-LYDRNSNS 217
            ++S+ L SPTSVL       EE I   I+ V +E  LE E   ++W L + N+N+
Sbjct: 201 MDDSQHLSSPTSVLNYQTYVSEEPIDSLIKPVKQE-FLEPEQEPISWHLGEGNTNT 255

[Close]

BLAST of CmaCh00G003340 vs. ExPASy Swiss-Prot
Match: O82339 (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana OX=3702 GN=CRF5 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-31
Identity = 90/195 (46.15%), Postives = 115/195 (58.97%), Query Frame = 0


Query: 10  RFREIRTTTHKPATET------KLVRISFTDGDATDSSSGEDEETISIR-HVKRHVTEIR 69
           R R+ + T H+  T T      K+V+I  TD  ATDSSS E+ +  S+   VKR+V EIR
Sbjct: 4   RVRKSKYTVHRKITSTPFDGFPKIVKIIVTDPCATDSSSDEENDNKSVAPRVKRYVDEIR 63

Query: 70  L---------LTRSSKKSPLKSGADPLRNSKCHRKFRGVRRRPWGKWAAEIRDPFRRTRV 129
                       ++ KKSP  +  +     K   K+RGVR+RPWGK+AAEIRDP  RTR+
Sbjct: 64  FCDEDDEPKPARKAKKKSPAAAAENGGDLVKSVVKYRGVRQRPWGKFAAEIRDPSSRTRL 123

Query: 130 WLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVATHFTP----PPLAVAISD 185
           WLGT+ T EEAA+ YD+AA+R+KG NA TNF   P S +T     TP      ++   S 
Sbjct: 124 WLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLETVSGCDSA 183

[Close]

BLAST of CmaCh00G003340 vs. ExPASy Swiss-Prot
Match: Q9SUQ2 (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana OX=3702 GN=CRF2 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-30
Identity = 91/227 (40.09%), Postives = 118/227 (51.98%), Query Frame = 0


Query: 9   IRFREIRTTTHKPATE------TKLVRISFTDGDATDSSSGEDEE-----TISIRHVKRH 68
           I+F E +T T    +E      T+++RIS TD DATDSSS ++EE         R VK+ 
Sbjct: 12  IKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKF 71

Query: 69  VTEI----------------------RLLTRSSKKSPLKSGADPLRNSKCHRKFRGVRRR 128
           V E+                      R +   S  SP+ S        K   KFRGVR+R
Sbjct: 72  VNEVYLDSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEK---KFRGVRQR 131

Query: 129 PWGKWAAEIRDPFRRTRVWLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVA 185
           PWGKWAAEIRDP +R R+WLGTY+T EEAA+VYD AA++L+GP+ALTNF+  P   +T  
Sbjct: 132 PWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTP---TTAT 191

[Close]

BLAST of CmaCh00G003340 vs. ExPASy Swiss-Prot
Match: Q9M374 (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana OX=3702 GN=CRF6 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-30
Identity = 104/266 (39.10%), Postives = 141/266 (53.01%), Query Frame = 0


Query: 9   IRFREIRTTTHKPATET----KLVRISFTDGDATDSSSGEDE--ETISIRHVKRHVTEIR 68
           ++F E RT T+  AT +    +LVRI+ TD  ATDSSS +D+      +  VKR+V EIR
Sbjct: 8   VKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIR 67

Query: 69  LLT-RSSKKSPLKSG----------ADPLRNSKCHRKFRGVRRRPWGKWAAEIRDPFRRT 128
                SS  +  + G           D +  S   +K+RGVR+RPWGK+AAEIRDP  RT
Sbjct: 68  FCQGESSSSTAARKGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSRT 127

Query: 129 RVWLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVATHFTPPPL----AVAI 188
           R+WLGT+ T EEAA+ YD+AA+ LKGP ALTNF   P          TP P+     V+ 
Sbjct: 128 RIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPP----------TPTPVIDLQTVSA 187

Query: 189 SD--REESRSLCSPTSVLRLEEQIWRPIEHVSEESALEME-LNWLYDRNSNSLLFNSRSP 248
            D  R+  +SL SPTSVLR          +V+EE+  E+E +    +R S  +     S 
Sbjct: 188 CDYGRDSRQSLHSPTSVLRF---------NVNEETEHEIEAIELSPERKSTVIKEEEESS 247

Query: 249 QPINSDEMEDFGDIPMDFESCKWDVE 251
             +   +     D+ +  E C WD E
Sbjct: 248 AGLVFPDPYLLPDLSLAGE-CFWDTE 253

[Close]

BLAST of CmaCh00G003340 vs. TAIR 10
Match: AT4G27950.1 (cytokinin response factor 4 )

HSP 1 Score: 138.3 bits (347), Expect = 9.1e-33
Identity = 102/236 (43.22%), Postives = 136/236 (57.63%), Query Frame = 0


Query: 14  IRTTTHKPATETK--------LVRISFTDGDATDSSSGEDEETISIRHVKRHVTEIRLLT 73
           IR  T K + E K        LVR+S TD DATDSSS E+E     R VKR + EIR+  
Sbjct: 21  IRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVKRLINEIRVEP 80

Query: 74  RSS-----KKSPLK---------SGADPLRNSKCHRKFRGVRRRPWGKWAAEIRDPFRRT 133
            SS       SP K         +   P  + +  +K+RGVR+RPWGKWAAEIRDP +R 
Sbjct: 81  SSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRR 140

Query: 134 RVWLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVATHFTPPP-LAVAISD- 193
           R+WLGT+ T EEAA+VYD AA++L+GP+ALTNF   P  +        P   ++V+IS+ 
Sbjct: 141 RIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQEQEPESNMSVSISES 200

Query: 194 REESRSLCSPTSVLRL-----EEQIWRPIEHVSEESALEME---LNW-LYDRNSNS 217
            ++S+ L SPTSVL       EE I   I+ V +E  LE E   ++W L + N+N+
Sbjct: 201 MDDSQHLSSPTSVLNYQTYVSEEPIDSLIKPVKQE-FLEPEQEPISWHLGEGNTNT 255

[Close]

BLAST of CmaCh00G003340 vs. TAIR 10
Match: AT2G46310.1 (cytokinin response factor 5 )

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-32
Identity = 90/195 (46.15%), Postives = 115/195 (58.97%), Query Frame = 0


Query: 10  RFREIRTTTHKPATET------KLVRISFTDGDATDSSSGEDEETISIR-HVKRHVTEIR 69
           R R+ + T H+  T T      K+V+I  TD  ATDSSS E+ +  S+   VKR+V EIR
Sbjct: 4   RVRKSKYTVHRKITSTPFDGFPKIVKIIVTDPCATDSSSDEENDNKSVAPRVKRYVDEIR 63

Query: 70  L---------LTRSSKKSPLKSGADPLRNSKCHRKFRGVRRRPWGKWAAEIRDPFRRTRV 129
                       ++ KKSP  +  +     K   K+RGVR+RPWGK+AAEIRDP  RTR+
Sbjct: 64  FCDEDDEPKPARKAKKKSPAAAAENGGDLVKSVVKYRGVRQRPWGKFAAEIRDPSSRTRL 123

Query: 130 WLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVATHFTP----PPLAVAISD 185
           WLGT+ T EEAA+ YD+AA+R+KG NA TNF   P S +T     TP      ++   S 
Sbjct: 124 WLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLETVSGCDSA 183

[Close]

BLAST of CmaCh00G003340 vs. TAIR 10
Match: AT4G23750.1 (cytokinin response factor 2 )

HSP 1 Score: 135.2 bits (339), Expect = 7.7e-32
Identity = 91/227 (40.09%), Postives = 118/227 (51.98%), Query Frame = 0


Query: 9   IRFREIRTTTHKPATE------TKLVRISFTDGDATDSSSGEDEE-----TISIRHVKRH 68
           I+F E +T T    +E      T+++RIS TD DATDSSS ++EE         R VK+ 
Sbjct: 12  IKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKF 71

Query: 69  VTEI----------------------RLLTRSSKKSPLKSGADPLRNSKCHRKFRGVRRR 128
           V E+                      R +   S  SP+ S        K   KFRGVR+R
Sbjct: 72  VNEVYLDSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEK---KFRGVRQR 131

Query: 129 PWGKWAAEIRDPFRRTRVWLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVA 185
           PWGKWAAEIRDP +R R+WLGTY+T EEAA+VYD AA++L+GP+ALTNF+  P   +T  
Sbjct: 132 PWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTP---TTAT 191

[Close]

BLAST of CmaCh00G003340 vs. TAIR 10
Match: AT4G23750.2 (cytokinin response factor 2 )

HSP 1 Score: 135.2 bits (339), Expect = 7.7e-32
Identity = 91/227 (40.09%), Postives = 118/227 (51.98%), Query Frame = 0


Query: 9   IRFREIRTTTHKPATE------TKLVRISFTDGDATDSSSGEDEE-----TISIRHVKRH 68
           I+F E +T T    +E      T+++RIS TD DATDSSS ++EE         R VK+ 
Sbjct: 12  IKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKF 71

Query: 69  VTEI----------------------RLLTRSSKKSPLKSGADPLRNSKCHRKFRGVRRR 128
           V E+                      R +   S  SP+ S        K   KFRGVR+R
Sbjct: 72  VNEVYLDSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEK---KFRGVRQR 131

Query: 129 PWGKWAAEIRDPFRRTRVWLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVA 185
           PWGKWAAEIRDP +R R+WLGTY+T EEAA+VYD AA++L+GP+ALTNF+  P   +T  
Sbjct: 132 PWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTP---TTAT 191

[Close]

BLAST of CmaCh00G003340 vs. TAIR 10
Match: AT3G61630.1 (cytokinin response factor 6 )

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-31
Identity = 104/266 (39.10%), Postives = 141/266 (53.01%), Query Frame = 0


Query: 9   IRFREIRTTTHKPATET----KLVRISFTDGDATDSSSGEDE--ETISIRHVKRHVTEIR 68
           ++F E RT T+  AT +    +LVRI+ TD  ATDSSS +D+      +  VKR+V EIR
Sbjct: 8   VKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIR 67

Query: 69  LLT-RSSKKSPLKSG----------ADPLRNSKCHRKFRGVRRRPWGKWAAEIRDPFRRT 128
                SS  +  + G           D +  S   +K+RGVR+RPWGK+AAEIRDP  RT
Sbjct: 68  FCQGESSSSTAARKGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSRT 127

Query: 129 RVWLGTYDTPEEAAVVYDQAAVRLKGPNALTNFAEAPNSKSTVATHFTPPPL----AVAI 188
           R+WLGT+ T EEAA+ YD+AA+ LKGP ALTNF   P          TP P+     V+ 
Sbjct: 128 RIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPP----------TPTPVIDLQTVSA 187

Query: 189 SD--REESRSLCSPTSVLRLEEQIWRPIEHVSEESALEME-LNWLYDRNSNSLLFNSRSP 248
            D  R+  +SL SPTSVLR          +V+EE+  E+E +    +R S  +     S 
Sbjct: 188 CDYGRDSRQSLHSPTSVLRF---------NVNEETEHEIEAIELSPERKSTVIKEEEESS 247

Query: 249 QPINSDEMEDFGDIPMDFESCKWDVE 251
             +   +     D+ +  E C WD E
Sbjct: 248 AGLVFPDPYLLPDLSLAGE-CFWDTE 253

The following BLAST results are available for this feature:

BLAST of CmaCh00G003340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04682	7.2e-35	52.83	Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicu...	[more]
Q9SUE3	1.3e-31	43.22	Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82339	1.7e-31	46.15	Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9SUQ2	1.1e-30	40.09	Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M374	2.4e-30	39.10	Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmaCh00G003340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27950.1	9.1e-33	43.22	cytokinin response factor 4	[more]
AT2G46310.1	1.2e-32	46.15	cytokinin response factor 5	[more]
AT4G23750.1	7.7e-32	40.09	cytokinin response factor 2	[more]
AT4G23750.2	7.7e-32	40.09	cytokinin response factor 2	[more]
AT3G61630.1	1.7e-31	39.10	cytokinin response factor 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 111..127 score: 61.07 coord: 89..100 score: 69.39
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 88..151 e-value: 5.7E-36 score: 135.5
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 88..137 e-value: 6.7E-14 score: 51.9
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 88..145 score: 23.551332
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 88..147 e-value: 1.04896E-31 score: 109.669
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 87..146 e-value: 7.5E-26 score: 92.0
None	No IPR available	PANTHER	PTHR31194:SF152	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED	coord: 8..258
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 8..258
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 88..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003340.1	CmaCh00G003340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity