CmaCh00G003240 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G003240
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr00: 25072267 .. 25073171 (-)
RNA-Seq ExpressionCmaCh00G003240
SyntenyCmaCh00G003240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCCGTCGCTTGATTGCCGACCAGCAGTAGGGGCCTTTTGGCCCCCAAAGGCACGTGTCGTTGGCCAAGCCCCTGCAACGGATGAGTCTCAGGGGCTGCCTTGTAACGTAATTCCCACCGAGCGACGGGTAGAATCCTTTGCAGACGACTTAAATATGCGACAGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGCGTGAGTTGGGGTGGTGTGGGTTTGGGTGTTGGTGAGAAGGACGCAGGGGTGGGTGTGTGGGAGCACGGGTTGGGCGCTCGCGTGCCCGCTAAGGCCTACGGCCCGCAATCGTGGGGCGCCAGTGCCCGCCCCCTCGTGCGCGCGCCGAGCCCCACGCCGCAGCAGCGCCCCCATCGCCCTTGCGCGCACATCATGCCCGCCAACACCGGCAATCGTGGGGCGCCAGTGCCCGCCCCCTCGTGCGCGCGCNAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACTCGTCGGCTGTTGGTGGACTGTCGAGCTGCTCCCGCGGCGAGAGCGAGTCGCTGCGTGCCGGCCGGGGGACGGACTGGGAACGACTCCTTCGGGGGCCTTCCCCAGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAA

mRNA sequence

ATGCGCCCGTCGCTTGATTGCCGACCAGCAGTAGGGGCCTTTTGGCCCCCAAAGGCACGTGTCGTTGGCCAAGCCCCTGCAACGGATGAGTCTCAGGGGCTGCCTTGTAACGTAATTCCCACCGAGCGACGGGTAGAATCCTTTGCAGACGACTTAAATATGCGACAGGGTATTGACGCAGGGGTGGGTGTGTGGGAGCACGGGTTGGGCGCTCGCGTGCCCGCTAAGGCCTACGGCCCGCAATCGTGGGGCGCCAGTGCCCGCCCCCTCGTGCGCGCGCCGAGCCCCACGCCGCAGCAGCGCCCCCATCGCCCTTGCGCGCACATCATGCCCGCCAACACCGGCAATCGTGGGGCGCCAGTGCCCGCCCCCTCGTGCGCGCGCNAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACTCGTCGGCTGTTGGTGGACTGTCGAGCTGCTCCCGCGGCGAGAGCGAGTCGCTGCGTGCCGGCCGGGGGACGGACTGGGAACGACTCCTTCGGGGGCCTTCCCCAGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAA

Coding sequence (CDS)

ATGCGCCCGTCGCTTGATTGCCGACCAGCAGTAGGGGCCTTTTGGCCCCCAAAGGCACGTGTCGTTGGCCAAGCCCCTGCAACGGATGAGTCTCAGGGGCTGCCTTGTAACGTAATTCCCACCGAGCGACGGGTAGAATCCTTTGCAGACGACTTAAATATGCGACAGGGTATTGACGCAGGGGTGGGTGTGTGGGAGCACGGGTTGGGCGCTCGCGTGCCCGCTAAGGCCTACGGCCCGCAATCGTGGGGCGCCAGTGCCCGCCCCCTCGTGCGCGCGCCGAGCCCCACGCCGCAGCAGCGCCCCCATCGCCCTTGCGCGCACATCATGCCCGCCAACACCGGCAATCGTGGGGCGCCAGTGCCCGCCCCCTCGTGCGCGCGCNAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACTCGTCGGCTGTTGGTGGACTGTCGAGCTGCTCCCGCGGCGAGAGCGAGTCGCTGCGTGCCGGCCGGGGGACGGACTGGGAACGACTCCTTCGGGGGCCTTCCCCAGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAA

Protein sequence

MRPSLDCRPAVGAFWPPKARVVGQAPATDESQGLPCNVIPTERRVESFADDLNMRQGIDAGVGVWEHGLGARVPAKAYGPQSWGASARPLVRAPSPTPQQRPHRPCAHIMPANTGNRGAPVPAPSCARXVSKVNSLWSMEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCRAAPAARASRCVPAGGRTGNDSFGGLPQASNSQLRTGTDKGNPTV
Homology
BLAST of CmaCh00G003240 vs. ExPASy TrEMBL
Match: A0A699GL51 (Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_001396 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-23
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 139 MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCRAAPAARASRCVPAGGRTGN 198
           MEQCRQGKSAKWIRNLGKRIGS+GWARGSQ RTRRL  DC +   ARA R V  GG+T N
Sbjct: 1   MEQCRQGKSAKWIRNLGKRIGSKGWARGSQFRTRRLSADCSSCSRARAGRRVSTGGQTRN 60

Query: 199 DSFGGLPQASNSQLRTG 216
            SFGGLP+ASNSQLRTG
Sbjct: 61  GSFGGLPRASNSQLRTG 77

BLAST of CmaCh00G003240 vs. ExPASy TrEMBL
Match: A0A3L6P952 (Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PMPSC055529 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-23
Identity = 59/85 (69.41%), Postives = 65/85 (76.47%), Query Frame = 0

Query: 139 MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCRAAPAARASRCVPAGGRTGN 198
           MEQCRQGKSAKWIRN GKRIGSEGWARGS+ RTRRL  DC +     +       GRTGN
Sbjct: 1   MEQCRQGKSAKWIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSRGESGPPRAGRGRTGN 60

Query: 199 DSFGGLPQASNSQLRTGTDKGNPTV 224
              GGLP+ASN++LRTGTDKGNPTV
Sbjct: 61  GPLGGLPRASNNRLRTGTDKGNPTV 85

BLAST of CmaCh00G003240 vs. ExPASy TrEMBL
Match: C6JSN6 (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=Sb1610s002010 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.3e-23
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0

Query: 139 MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCRAAPAARAS-RCVPAGGRTG 198
           MEQCRQGKSAK IRN GKRIGSEGWARGS+ RTRRL  DC +     +    + AGGRTG
Sbjct: 1   MEQCRQGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSRGESGPPRLLAGGRTG 60

Query: 199 NDSFGGLPQASNSQLRTGTDKGNPTV 224
           N SFGGLP+ASN++LRTGTDKGNPTV
Sbjct: 61  NGSFGGLPRASNNRLRTGTDKGNPTV 86

BLAST of CmaCh00G003240 vs. ExPASy TrEMBL
Match: A0A6J5UB22 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS21288 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.3e-23
Identity = 65/88 (73.86%), Postives = 69/88 (78.41%), Query Frame = 0

Query: 139 MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCRAAPAARASRCVPAGGRTGN 198
           MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRL VDC  +  +R     P  GR G 
Sbjct: 1   MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDC--SSCSRGESGSPRAGR-GT 60

Query: 199 D---SFGGLPQASNSQLRTGTDKGNPTV 224
           D   SFG  P+ASNS+LRTGTDKGNPTV
Sbjct: 61  DWERSFGDFPRASNSRLRTGTDKGNPTV 85

BLAST of CmaCh00G003240 vs. ExPASy TrEMBL
Match: A0A3Q7IVA7 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.3e-23
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 139 MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCRAAPAARASRCVPAGGRTGN 198
           MEQCR+GKSAKWIRN GKRI SEGWARGSQSRTRR     RAAPA +A   VP  GRT N
Sbjct: 1   MEQCRKGKSAKWIRNYGKRICSEGWARGSQSRTRRWTE--RAAPAVKAGHRVPDWGRTRN 60

Query: 199 DSFGGLPQASNSQLRTGTDKGNPTV 224
            SFGGLP+ SNSQLRTGT+KGN T+
Sbjct: 61  GSFGGLPRTSNSQLRTGTNKGNLTI 83

BLAST of CmaCh00G003240 vs. NCBI nr
Match: KAF3342141.1 (hypothetical protein FCM35_KLT00779 [Carex littledalei])

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-24
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 139 MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCRAAPA--ARASRCVPAGGRT 198
           MEQCRQGKSAK IRN GKRIGSEGWARGS+ RTRRL  DC +  A   RA R VPAGGR 
Sbjct: 1   MEQCRQGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSARGERAGRRVPAGGRA 60

Query: 199 GNDSFGGLPQASNSQLRTGTDKGNPTV 224
           GN   GGLP+A+NS+LRTGTDKGNPTV
Sbjct: 61  GNGPLGGLPRATNSRLRTGTDKGNPTV 87

BLAST of CmaCh00G003240 vs. NCBI nr
Match: KAF3339541.1 (hypothetical protein FCM35_KLT15312 [Carex littledalei])

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-24
Identity = 66/89 (74.16%), Postives = 70/89 (78.65%), Query Frame = 0

Query: 139 MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVD----CRAAPAARASRCVPAGG 198
           MEQC QGKSAKWIRN GKRIGSEGWARGS+ RTRRL  D     RAA AARA R VPAGG
Sbjct: 1   MEQCGQGKSAKWIRNFGKRIGSEGWARGSRPRTRRLPADSRRTARAAHAARAGRRVPAGG 60

Query: 199 RTGNDSFGGLPQASNSQLRTGTDKGNPTV 224
           R  N    GLP+A+NS+LRTGTDKGNPTV
Sbjct: 61  RAWNGPLEGLPRATNSRLRTGTDKGNPTV 89

BLAST of CmaCh00G003240 vs. NCBI nr
Match: KAF3327818.1 (hypothetical protein FCM35_KLT06424 [Carex littledalei])

HSP 1 Score: 119.8 bits (299), Expect = 3.0e-23
Identity = 78/145 (53.79%), Postives = 86/145 (59.31%), Query Frame = 0

Query: 89  PLVRAPSPTPQQRPHRPCA---HIMPANTGNRGAPVPAPSCARXVSKVNSLWSMEQCRQG 148
           P  RAP P P + P R  A   ++  +     G       C          W     RQG
Sbjct: 36  PASRAP-PCPDESPSRDVAADGNVRKSGDAGGGLGKSYLFCLTACPP----WKRLSRRQG 95

Query: 149 KSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDC-------RAAPAARASRCVPAGGRTGN 208
           KSAK IRN GKRIGSEGWARGS+ RTRRL  DC       RAA AARA R VPAGGR GN
Sbjct: 96  KSAKRIRNFGKRIGSEGWARGSRPRTRRLPADCSSCRRTARAAHAARAGRRVPAGGRAGN 155

Query: 209 DSFGGLPQASNSQLRTGTDKGNPTV 224
           D  GGLP+A+NS+LRTGTDKGNPTV
Sbjct: 156 DPLGGLPRATNSRLRTGTDKGNPTV 175

BLAST of CmaCh00G003240 vs. NCBI nr
Match: GEU29418.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 119.0 bits (297), Expect = 5.2e-23
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 139 MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCRAAPAARASRCVPAGGRTGN 198
           MEQCRQGKSAKWIRNLGKRIGS+GWARGSQ RTRRL  DC +   ARA R V  GG+T N
Sbjct: 1   MEQCRQGKSAKWIRNLGKRIGSKGWARGSQFRTRRLSADCSSCSRARAGRRVSTGGQTRN 60

Query: 199 DSFGGLPQASNSQLRTG 216
            SFGGLP+ASNSQLRTG
Sbjct: 61  GSFGGLPRASNSQLRTG 77

BLAST of CmaCh00G003240 vs. NCBI nr
Match: RLM40727.1 (hypothetical protein C2845_PMPSC055529 [Panicum miliaceum])

HSP 1 Score: 118.6 bits (296), Expect = 6.8e-23
Identity = 59/85 (69.41%), Postives = 65/85 (76.47%), Query Frame = 0

Query: 139 MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCRAAPAARASRCVPAGGRTGN 198
           MEQCRQGKSAKWIRN GKRIGSEGWARGS+ RTRRL  DC +     +       GRTGN
Sbjct: 1   MEQCRQGKSAKWIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSRGESGPPRAGRGRTGN 60

Query: 199 DSFGGLPQASNSQLRTGTDKGNPTV 224
              GGLP+ASN++LRTGTDKGNPTV
Sbjct: 61  GPLGGLPRASNNRLRTGTDKGNPTV 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A699GL512.5e-2377.92Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_001396 PE=... [more]
A0A3L6P9523.3e-2369.41Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PMPSC055529 PE=4 S... [more]
C6JSN64.3e-2372.09Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=Sb1610s002010 PE=4 SV=1[more]
A0A6J5UB227.3e-2373.86Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS21288 PE=4 S... [more]
A0A3Q7IVA77.3e-2374.12Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAF3342141.11.6e-2474.71hypothetical protein FCM35_KLT00779 [Carex littledalei][more]
KAF3339541.13.6e-2474.16hypothetical protein FCM35_KLT15312 [Carex littledalei][more]
KAF3327818.13.0e-2353.79hypothetical protein FCM35_KLT06424 [Carex littledalei][more]
GEU29418.15.2e-2377.92hypothetical protein [Tanacetum cinerariifolium][more]
RLM40727.16.8e-2369.41hypothetical protein C2845_PMPSC055529 [Panicum miliaceum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..222
NoneNo IPR availablePANTHERPTHR33187WU:FI09B08coord: 138..180
NoneNo IPR availablePANTHERPTHR33187:SF11WU:FI09B08coord: 138..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G003240.1CmaCh00G003240.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane