CmaCh00G003210 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G003210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	PMD domain-containing protein
Location	Cma_Chr00: 25059790 .. 25060648 (+)
RNA-Seq Expression	CmaCh00G003210
Synteny	CmaCh00G003210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCATGTAGACAAGGGGTGCGAGCGTGGACTTGTTAGTTGGGCAGGTGTTGGTGGGCATGATGTGCGCGCAAGGGTGATGGGGGCGCTTCTGCGGCGTGGGGCTTCGCGCACGCACGAGGGGGCGGGCACTGGCGCCCCACGATTGCCGGTGTTGGTGGGCATGATGTGCGCGCAAAAGTGATGGGGGCGCTGCTGCGGCGTGGGGCTTGGCGCACGCACGAGGGGGCGAGCACTGGCGCCCCACGATTGCCGACCGTAGGCCTTAGCGGGCACGCGAGCGCCCAACCCATGCTCCCACACACCCACCCATGCATCCTTCTCACCAACACCCAAACCCACACCACCCCAACTCACGCATGCATCTTAGATGGCCTTGCATTGGAGGAGCACGTCCAATCATCAACACTTGACGAGTAGAATCATTACTTTTTCCTATAGCCTCCACGACACTTGAAATAAATAAATTGGTTTATTGCGTGGGGAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGGAATTACGTTACAAGGCAGCCCCTGAGACTCATCCGTCGCAGGGGCGTAGCCAACGACACGTGCCTTTGGGGGCCAAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGACGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

mRNA sequence

GGGCATGTAGACAAGGGGTGCGAGCGTGGACTTGTTAGTTGGGCAGGTGTTGGTGGGCATGATGTGCGCGCAAGGGTGATGGGGGCGCTTCTGCGGCGTGGGGCTTCGCGCACGCACGAGGGGGCGGGCACTGGCGCCCCACGATTGCCGGTGTTGGTGGGCATGATGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGGAATTACGTTACAAGGCAGCCCCTGAGACTCATCCGTCGCAGGGGCGTAGCCAACGACACGTGCCTTTGGGGGCCAAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGACGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Coding sequence (CDS)

GGGCATGTAGACAAGGGGTGCGAGCGTGGACTTGTTAGTTGGGCAGGTGTTGGTGGGCATGATGTGCGCGCAAGGGTGATGGGGGCGCTTCTGCGGCGTGGGGCTTCGCGCACGCACGAGGGGGCGGGCACTGGCGCCCCACGATTGCCGGTGTTGGTGGGCATGATGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGGAATTACGTTACAAGGCAGCCCCTGAGACTCATCCGTCGCAGGGGCGTAGCCAACGACACGTGCCTTTGGGGGCCAAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGACGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Protein sequence

GHVDKGCERGLVSWAGVGGHDVRARVMGALLRRGASRTHEGAGTGAPRLPVLVGMMDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQGRSQRHVPLGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY

Homology

[Close]

BLAST of CmaCh00G003210 vs. ExPASy TrEMBL
Match: A0A2N9IE46 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50610 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.9e-48
Identity = 104/150 (69.33%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 23  RARVMGALLRRGASRTHEGAGTGAPR--LPVLVGMMDESERRRAESQWIVAARPLCHLQY 82
           +AR+ G  LR+G ++    A    PR   P++    DES+R RAESQWIVAARPLCHLQY
Sbjct: 102 KARLPGPRLRQGKAKAKAKARLPGPRQCQPMVEEGGDESKRHRAESQWIVAARPLCHLQY 161

Query: 83  PVAYLSRLQRILPVARWELRYKAAPETHPSQGRSQRHVPLGAKRPLLLVGNQATGACVAS 142
           PVAYLSRLQRILPV RWEL +KAA    P +G  QRHVP GA+RPLL VGN+ATG  +AS
Sbjct: 162 PVAYLSRLQRILPVTRWELYFKAAHTARPPRGLHQRHVPSGARRPLLRVGNRATGTRIAS 221

Query: 143 SPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 171
           SPDSDLEAFSHNPAHGSFAPLAFQPSAMTN
Sbjct: 222 SPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 251

[Close]

BLAST of CmaCh00G003210 vs. ExPASy TrEMBL
Match: A0A2N9F857 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11092 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.9e-48
Identity = 104/150 (69.33%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 23   RARVMGALLRRGASRTHEGAGTGAPR--LPVLVGMMDESERRRAESQWIVAARPLCHLQY 82
            +AR+ G  LR+G ++    A    PR   P++    DES+R RAESQWIVAARPLCHLQY
Sbjct: 1495 KARLPGPRLRQGKAKAKAKARLPGPRQCQPMVEEGGDESKRHRAESQWIVAARPLCHLQY 1554

Query: 83   PVAYLSRLQRILPVARWELRYKAAPETHPSQGRSQRHVPLGAKRPLLLVGNQATGACVAS 142
            PVAYLSRLQRILPV RWEL +KAA    P +G  QRHVP GA+RPLL VGN+ATG  +AS
Sbjct: 1555 PVAYLSRLQRILPVTRWELYFKAAHTARPPRGLHQRHVPSGARRPLLRVGNRATGTRIAS 1614

Query: 143  SPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 171
            SPDSDLEAFSHNPAHGSFAPLAFQPSAMTN
Sbjct: 1615 SPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 1644

[Close]

BLAST of CmaCh00G003210 vs. ExPASy TrEMBL
Match: A0A2N9HGF0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39104 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.9e-48
Identity = 104/150 (69.33%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 23  RARVMGALLRRGASRTHEGAGTGAPR--LPVLVGMMDESERRRAESQWIVAARPLCHLQY 82
           +AR+ G  LR+G ++    A    PR   P++    DES+R RAESQWIVAARPLCHLQY
Sbjct: 508 KARLPGPRLRQGMAKAKAKARLPGPRQCQPMVEEGGDESKRHRAESQWIVAARPLCHLQY 567

Query: 83  PVAYLSRLQRILPVARWELRYKAAPETHPSQGRSQRHVPLGAKRPLLLVGNQATGACVAS 142
           PVAYLSRLQRILPV RWEL +KAA    P +G  QRHVP GA+RPLL VGN+ATG  +AS
Sbjct: 568 PVAYLSRLQRILPVTRWELYFKAAHTARPPRGLHQRHVPSGARRPLLRVGNRATGTRIAS 627

Query: 143 SPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 171
           SPDSDLEAFSHNPAHGSFAPLAFQPSAMTN
Sbjct: 628 SPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 657

[Close]

BLAST of CmaCh00G003210 vs. ExPASy TrEMBL
Match: A0A5C7H5R6 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024286 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.6e-47
Identity = 101/124 (81.45%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 57  DESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQGRSQR 116
           DESER RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARWELR+KAA    P  G  QR
Sbjct: 37  DESERHRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKAACAALPPHGLHQR 96

Query: 117 HVPLGAKRPLLLVGNQATGACV-ASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQR 176
           HVPLG  R LL VG +A G     SSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQR
Sbjct: 97  HVPLGTVRSLLRVGKRAAGGRTRRSSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQR 156

Query: 177 FLSY 180
           FLSY
Sbjct: 157 FLSY 160

[Close]

BLAST of CmaCh00G003210 vs. ExPASy TrEMBL
Match: A0A2N9I9W5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50608 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.4e-47
Identity = 105/149 (70.47%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 23   RARVMGALLRRGASRTHEGA-GTGAPRLPVLVGMMDESERRRAESQWIVAARPLCHLQYP 82
            +AR+ G  LR+G  R  +G  G G     +  G  DES+R RAESQWIVAARPLCHLQYP
Sbjct: 859  KARLPGPRLRQGMPRPRQGCQGQGNANRWMEEG-GDESKRHRAESQWIVAARPLCHLQYP 918

Query: 83   VAYLSRLQRILPVARWELRYKAAPETHPSQGRSQRHVPLGAKRPLLLVGNQATGACVASS 142
            VAYLSRLQRILPV RWEL +KAA    P +G  QRHVP GA+RPLL VGN+ATG  +ASS
Sbjct: 919  VAYLSRLQRILPVTRWELYFKAAHTARPPRGLHQRHVPSGARRPLLRVGNRATGTRIASS 978

Query: 143  PDSDLEAFSHNPAHGSFAPLAFQPSAMTN 171
            PDSDLEAFSHNPAHGSFAPLAFQPSAMTN
Sbjct: 979  PDSDLEAFSHNPAHGSFAPLAFQPSAMTN 1006

[Close]

BLAST of CmaCh00G003210 vs. NCBI nr
Match: KAG8363055.1 (hypothetical protein BUALT_BualtUnG0008900 [Buddleja alternifolia])

HSP 1 Score: 202.2 bits (513), Expect = 3.7e-48
Identity = 102/127 (80.31%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 53  VGMMDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQG 112
           VG  DESER+RAESQ IVAARPLC LQYPVAYLSRLQRILP ARWEL +KAA    P +G
Sbjct: 601 VGGRDESERQRAESQRIVAARPLCRLQYPVAYLSRLQRILPAARWELYFKAANAARPPRG 660

Query: 113 RSQRHVPLGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCA 172
             QRHVPLGA+ PLL VG +  G  VASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCA
Sbjct: 661 LGQRHVPLGARGPLLRVGKRTAGERVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCA 720

Query: 173 NQRFLSY 180
           NQRFLSY
Sbjct: 721 NQRFLSY 727

[Close]

BLAST of CmaCh00G003210 vs. NCBI nr
Match: KAG8363060.1 (hypothetical protein BUALT_BualtUnG0009600 [Buddleja alternifolia])

HSP 1 Score: 202.2 bits (513), Expect = 3.7e-48
Identity = 102/127 (80.31%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 53  VGMMDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQG 112
           VG  DESER+RAESQ IVAARPLC LQYPVAYLSRLQRILP ARWEL +KAA    P +G
Sbjct: 545 VGGRDESERQRAESQRIVAARPLCRLQYPVAYLSRLQRILPAARWELYFKAANAARPPRG 604

Query: 113 RSQRHVPLGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCA 172
             QRHVPLGA+ PLL VG +  G  VASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCA
Sbjct: 605 LGQRHVPLGARGPLLRVGKRTAGERVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCA 664

Query: 173 NQRFLSY 180
           NQRFLSY
Sbjct: 665 NQRFLSY 671

[Close]

BLAST of CmaCh00G003210 vs. NCBI nr
Match: OPH47798.1 (hypothetical protein B4U81_25600, partial [Vibrio campbellii])

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-47
Identity = 101/121 (83.47%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 59  SERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQGRSQRHV 118
           S RRRAESQ IVAARPLC LQYPVAYLSRLQRILP ARWEL + A     P  G  QRHV
Sbjct: 18  SGRRRAESQRIVAARPLCLLQYPVAYLSRLQRILPAARWELYFMATRAARPPHGLGQRHV 77

Query: 119 PLGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLS 178
           PLGA RPLLLVG +A GACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLS
Sbjct: 78  PLGAVRPLLLVGKRAAGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLS 137

Query: 179 Y 180
           Y
Sbjct: 138 Y 138

[Close]

BLAST of CmaCh00G003210 vs. NCBI nr
Match: KAG8375836.1 (hypothetical protein BUALT_Bualt09G0000500 [Buddleja alternifolia])

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-47
Identity = 101/128 (78.91%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 52  LVGMMDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQ 111
           + G  DESER+RAESQ IVAARPLC LQYPVAYLSRLQRILP ARWEL +KAA    P +
Sbjct: 514 ICGGGDESERQRAESQRIVAARPLCRLQYPVAYLSRLQRILPAARWELYFKAANAARPPR 573

Query: 112 GRSQRHVPLGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNC 171
           G  QRHVPLGA+ PLL VG +  G  VASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNC
Sbjct: 574 GLGQRHVPLGARGPLLRVGKRTAGERVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNC 633

Query: 172 ANQRFLSY 180
           ANQRFLSY
Sbjct: 634 ANQRFLSY 641

[Close]

BLAST of CmaCh00G003210 vs. NCBI nr
Match: TXG51762.1 (hypothetical protein EZV62_024286 [Acer yangbiense])

HSP 1 Score: 198.4 bits (503), Expect = 5.4e-47
Identity = 101/124 (81.45%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 57  DESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQGRSQR 116
           DESER RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARWELR+KAA    P  G  QR
Sbjct: 37  DESERHRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKAACAALPPHGLHQR 96

Query: 117 HVPLGAKRPLLLVGNQATGACV-ASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQR 176
           HVPLG  R LL VG +A G     SSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQR
Sbjct: 97  HVPLGTVRSLLRVGKRAAGGRTRRSSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQR 156

Query: 177 FLSY 180
           FLSY
Sbjct: 157 FLSY 160

The following BLAST results are available for this feature:

BLAST of CmaCh00G003210 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh00G003210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IE46	6.9e-48	69.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50610 PE=4 SV=1	[more]
A0A2N9F857	6.9e-48	69.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11092 PE=4 SV=1	[more]
A0A2N9HGF0	6.9e-48	69.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39104 PE=4 SV=1	[more]
A0A5C7H5R6	2.6e-47	81.45	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024286 PE=4 SV=1	[more]
A0A2N9I9W5	3.4e-47	70.47	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50608 PE=4 SV=1	[more]

BLAST of CmaCh00G003210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8363055.1	3.7e-48	80.31	hypothetical protein BUALT_BualtUnG0008900 [Buddleja alternifolia]	[more]
KAG8363060.1	3.7e-48	80.31	hypothetical protein BUALT_BualtUnG0009600 [Buddleja alternifolia]	[more]
OPH47798.1	1.4e-47	83.47	hypothetical protein B4U81_25600, partial [Vibrio campbellii]	[more]
KAG8375836.1	1.4e-47	78.91	hypothetical protein BUALT_Bualt09G0000500 [Buddleja alternifolia]	[more]
TXG51762.1	5.4e-47	81.45	hypothetical protein EZV62_024286 [Acer yangbiense]	[more]

BLAST of CmaCh00G003210 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003210.1	CmaCh00G003210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane