CmaCh00G003150 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G003150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionDNA-directed RNA polymerase subunit beta
LocationCma_Chr00: 24325430 .. 24328742 (-)
RNA-Seq ExpressionCmaCh00G003150
SyntenyCmaCh00G003150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGAAATAGACCGATTTGATATCACCCTAAAATTAGAATTAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAAGATGAATGATCTGAATGGATGTGAATGAGTCAAATTACTTATCCCTTGGTCTATTAGTGAACTATCTCTCCAGAGATTGTGAAAGATGTTCCACCCACTACAATCTTTCGACTGGAACGAGAATCTCGATAACCTAAACAAAAATGCAGAAGTGAGCCTACTCCTCTCTCCCCCTTTTTTAGCCAACACCATCAACCCCATTCATTTTTCACCTTGAATGAGTCCCAAAAATCTCAGATAAATAGAAGGAAAGGAGATCAGAAAGATACGTGGACGACTTGACTCTCGTATAGGTCGGTCGGATGTTTCCGTGAACAGTAAGCAGCGAATCTCCCCTGATTTTGGGAAAGCTGGTGGCGTGAATTCTTTCAAGGCAAGGGGCCTGATCGACATTCTTGTTTACTCTGATCCGGTCGAGGTGGTTTTCATTTACTAGCACGTAGGTGGTTTAAGTTCCTTTGACCGAGTCTTTCTGACCCCTGTGAACATATTTTCTTAATGTATTAAAGAGGGCCTCTCTAACTGGTGAAAAGTGGAGGGTGTCCACTAAGTCCGGGAGGAATCGGTAGTTTGGTACTGGATCCCTTCGGACCTAGAGAACGTGGGACGTTGGGTCGGGGTTTGGTGAACCAACTGGTCGCTCCTCTCCTTTACAGTCAAGTTGCTTCTCTCCTATTGATTCTTGAACTCGGTAATATAGGGTTTTGATTGAATGAATTGACTCTCCTTCACCTTCTTTACACGAGGTAAAGCGTCTTCGCTCCTCTAGTTTCAGTATGGGGCCCCTTTTTCGTTGCCTAGATTACACCTTCAGAATACCCCTGAAGGGAATTTTGCTATACTTCCCTCAATCTTCACTTTACGCCACGCTGACTGCCCTTTCGTCATAAGGCGTGGAATTAGACCAAGGGTAATCTCCATAGGAACTAGTCCCTCAGATTTCGCACGTAGAAGATTAAGACACTGCCCCAGGGCTATGGACAAGTAGATCGATCGCCCTATCTCACAACTACATAGAGGGTCTGACGTTGTATATATGTACTTTGATTTTGTTCCCCCCTGTAAGATCAATATCACAACCAATATTCTCAGAAAGGAGATTTTGAGATATCGGTAGTTGTCCGATCGTACCCAAACAGTAAGATTCCAGAGGAAAATGCACCTAAGATCAAATATTTCGAGCCGGCTTCCGTGGAAAATTCAAACTTTCTTTTGGATGCTGCCATCACATAAAAACATAAACTTTGAGGCTCAATAGCTAAATACATGGAAATTGAATCATGAGCCGAGATCATAAAGAGCATACTGCGAGTAGGAAGTGGAATTAATACAATGAATTCAAAAACATCAAACCTCTCTTGTTCGAAAGAATCGAACACATCGAAATGGTATCAGCCGTACTTAATAATCGAACACATCGAAGTGGCGTGAATTCTTACCTGACCTACACCTATTTATTCAAAGTAAACAAAGAGAAAGCAAGACAAGATGAATTACAGGAAGGAACGAGGAAATCAAGCTTAATGAGAGTGATCTAGAAGGAAAGACGAAGAAAGATGAATAATGGGAATATAACTATACTAAGTAAGCAGTGTTCAGTTATTGCATTAAGGAAGTCAAGATGAATGAGACGAAACAAATGAAAGAAAGATCAGCTCATTCACCTTCATTTTCTTCTTCTGCCTGAACCTCCCTTCCCGGAACCTTTACTGTCGAGCTACTCCTATTTCTTCTTTCTCCTTCACCTTTACAGGAAAGAAAAGAATAATAAATCCTTCACCTCGGCTTCGCCCCTTTACTCTTCATTCTCCTTAACTCCTTGTTCCGTTCTTGTTCGGTTATTCTTTCATCACAAGGTAAATAGGTGTTCATTCAGTAGCTCTTTGATTGAACTGANTGATTGAACTGATCTTGATCCTCTCGCTACTTACTCATTCAGCCAGCTGAACCGATATTCCCTATTTATTCTTCTTTAACTGTAACTGTAAACGAAGAGAAAGAGAAGCGACTGAACCAGAACCAGAACCAGATTGGGTAATTAGGAAGGAAAGAGAGGAATGAGACTGAACCTCTATTTATTCCCTTTTTTACAGTTCAAGAAATTCGGGAGAGAGAAGAGACCGTCAAATAGTGAACCCCTTATTTACAGTCGAGTAAATTATTAGCTGTTTTTCAAGACTCAACCTTATTCCTATGTGTTTATAGTGAGAATGAAAGAAGAAGAAGAAATTCATTAGATTAACTGCTTATAAAAGAATTGATTGAATGAAGAAAGAAAGGAAAGACTATCGATTCATTCTCCTTTTCCTTGACAGGCGAGTCAATTCATTAGCTGGCTGCTGAGTAAAGAAAAGATAAGAGAATTGAAAGACTGAAGATGAATGAGAGTGAAGACGAAAGAAGAATTAGACTGAACTACTGAACGAACCTGATTGAACGAACCCATCCTTTATAGTTCGTTCTAGAATCAATGAATATTCAATCCCAAACCTTTACTCCTGAACCTTAACCGATAGAGAATGAAAGAAGGGAGAGTCAATTCCTTTCTTTGCAGCTCAATCACCTGAACCGGAACTCTTGAACAAGGTCAAGCTATTTGATTGAATTCTCCTTCCCCTTATACGACTCTGAGCTTATTGTAAACGAGGTTGGTCTCACAGCTTGGCCCCTTTCCTCTGCATTTTGCTTTTCCTCTTCGTCTGGTTTTCATCATTCCTCTCCTGCCTGCCTGTAAGAAGGATGAATGAACCTATTTCTTCTTAAATGGATCTTTCTCCTCTTGCAACTGACTCCTGACCCGGACCCTTCTTTCACTTCTCTTTCTCCCTTGAACTCGGTTGGAACGCCATGTGGCTCGAGATTCAGGGGTTGCCACTATAGCCGAACACGGGGGAAAGATCATTTATACCGAACAAGATCCTTTTTTTGGGCAATGGGTATACTCTCGGAATTCCATTAGTTCTGTATCAACGTTCTAACAAAAAGACTTGTATGCAGCAAAAATCCCAGGTTCCCCAGGGTAAATGCATTAAAAAAGGGCAAATGTTAGCAGACGGTGCTGCTTTAGTGGCGAACTTGTGTTGGTAAAAACCGTATTTGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTTCTAATTAGCGAGCGTCTGGTATATGAAGATATTTATACTTCTTTCCACATACACGGATACGGAAATATGAAATTCAAACTCATGTGA

mRNA sequence

ATGCCGGAAATAGACCGATTTGATATCACCCTAAAATTAGAATTAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAAGATGAATGATCTGAATGGATGTCGGTCGGATGTTTCCGTGAACAGTAAGCAGCGAATCTCCCCTGATTTTGGGAAAGCTGGTGGCGTGAATTCTTTCAAGGCAAGGGGCCTGATCGACATTCTTGTTTACTCTGATCCGGTCGAGAGGGCCTCTCTAACTGGTGAAAAGTGGAGGGTGTCCACTAAGTCCGGGAGGAATCGACGGTGCTGCTTTAGTGGCGAACTTGTGTTGGTAAAAACCGTATTTGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTTCTAATTAGCGAGCGTCTGGTATATGAAGATATTTATACTTCTTTCCACATACACGGATACGGAAATATGAAATTCAAACTCATGTGA

Coding sequence (CDS)

ATGCCGGAAATAGACCGATTTGATATCACCCTAAAATTAGAATTAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAAGATGAATGATCTGAATGGATGTCGGTCGGATGTTTCCGTGAACAGTAAGCAGCGAATCTCCCCTGATTTTGGGAAAGCTGGTGGCGTGAATTCTTTCAAGGCAAGGGGCCTGATCGACATTCTTGTTTACTCTGATCCGGTCGAGAGGGCCTCTCTAACTGGTGAAAAGTGGAGGGTGTCCACTAAGTCCGGGAGGAATCGACGGTGCTGCTTTAGTGGCGAACTTGTGTTGGTAAAAACCGTATTTGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTTCTAATTAGCGAGCGTCTGGTATATGAAGATATTTATACTTCTTTCCACATACACGGATACGGAAATATGAAATTCAAACTCATGTGA

Protein sequence

MPEIDRFDITLKLELAKAMSPCIIWIPKMNDLNGCRSDVSVNSKQRISPDFGKAGGVNSFKARGLIDILVYSDPVERASLTGEKWRVSTKSGRNRRCCFSGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGYGNMKFKLM
Homology
[Close]
BLAST of CmaCh00G003150 vs. ExPASy Swiss-Prot
Match: Q8S8X9 (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 101 GELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           GEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 647 GELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]
BLAST of CmaCh00G003150 vs. ExPASy Swiss-Prot
Match: Q06RD9 (DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum OX=126431 GN=rpoB PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 101 GELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           GEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 649 GELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 693

[Close]
BLAST of CmaCh00G003150 vs. ExPASy Swiss-Prot
Match: Q3C1G7 (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 101 GELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           GEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 647 GELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]
BLAST of CmaCh00G003150 vs. ExPASy Swiss-Prot
Match: Q33C46 (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN=rpoB PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 101 GELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           GEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 647 GELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]
BLAST of CmaCh00G003150 vs. ExPASy Swiss-Prot
Match: Q2MIJ5 (DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum OX=147425 GN=rpoB PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 101 GELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           GEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 647 GELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]
BLAST of CmaCh00G003150 vs. ExPASy TrEMBL
Match: A0A1C9JC06 (DNA-directed RNA polymerase subunit beta OS=Helwingia himalaica OX=1902425 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.2e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 99  FSGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           F GEL L K VFVAYMPWEGYNSEDAVLISERLVY+DIYTSFHI  Y
Sbjct: 645 FGGELALGKNVFVAYMPWEGYNSEDAVLISERLVYDDIYTSFHIRKY 691

[Close]
BLAST of CmaCh00G003150 vs. ExPASy TrEMBL
Match: G0Y398 (DNA-directed RNA polymerase (Fragment) OS=Sisyrinchium striatum OX=59001 GN=rpoB PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 100 SGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           SGEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 80  SGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 125

[Close]
BLAST of CmaCh00G003150 vs. ExPASy TrEMBL
Match: A0A0S2IFG3 (DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=rpoB PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 100 SGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           SGEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 646 SGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]
BLAST of CmaCh00G003150 vs. ExPASy TrEMBL
Match: A0A0S2IE41 (DNA-directed RNA polymerase subunit beta OS=Cucurbita argyrosperma OX=34294 GN=rpoB PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 100 SGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           SGEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 646 SGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]
BLAST of CmaCh00G003150 vs. ExPASy TrEMBL
Match: A0A223GEU9 (DNA-directed RNA polymerase (Fragment) OS=Sisyrinchium macrocarpum OX=1053831 GN=rpoB PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 100 SGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           SGEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 80  SGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 125

[Close]
BLAST of CmaCh00G003150 vs. NCBI nr
Match: KAF3625926.1 (hypothetical protein FXO37_30605 [Capsicum annuum])

HSP 1 Score: 88.6 bits (218), Expect = 5.1e-14
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 101 GELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGYGNMKFKLM 154
           GEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSF    YGNMKF+LM
Sbjct: 212 GELSLGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSF---TYGNMKFRLM 261

[Close]
BLAST of CmaCh00G003150 vs. NCBI nr
Match: YP_009306462.1 (DNA-directed RNA polymerase beta subunit [Helwingia himalaica] >AOP19378.1 DNA-directed RNA polymerase beta subunit [Helwingia himalaica] >QZP43168.1 RNA polymerase beta subunit [Helwingia chinensis])

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-13
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 99  FSGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           F GEL L K VFVAYMPWEGYNSEDAVLISERLVY+DIYTSFHI  Y
Sbjct: 645 FGGELALGKNVFVAYMPWEGYNSEDAVLISERLVYDDIYTSFHIRKY 691

[Close]
BLAST of CmaCh00G003150 vs. NCBI nr
Match: AEJ90756.1 (RNA polymerase beta subunit, partial [Sisyrinchium macrocarpum subsp. macrocarpum] >AEJ90823.1 RNA polymerase beta subunit, partial [Sisyrinchium macrocarpum subsp. laetum] >AST24576.1 RNA polymerase beta subunit, partial [Sisyrinchium macrocarpum])

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-13
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 100 SGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           SGEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 80  SGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 125

[Close]
BLAST of CmaCh00G003150 vs. NCBI nr
Match: YP_009175759.1 (RNA polymerase beta subunit [Astragalus mongholicus var. nakaianus] >ALH42737.1 RNA polymerase beta subunit [Astragalus mongholicus var. nakaianus] >ANK78934.1 RNA polymerase beta subunit [Astragalus membranaceus var. membranaceus])

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-13
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 100 SGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           SGEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 646 SGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]
BLAST of CmaCh00G003150 vs. NCBI nr
Match: ACN42505.1 (RNA polymerase beta subunit, partial [Schnella siqueirae])

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-13
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 100 SGELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           SGEL L K V VAYMPWEGYNSEDAVLISERLVYEDIYTSFHI  Y
Sbjct: 81  SGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 126

[Close]
BLAST of CmaCh00G003150 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-14
Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 101 GELVLVKTVFVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIHGY 146
           GEL L K + VAYMPWEGYN EDAVLISE LVY DIYTSFHI  Y
Sbjct: 649 GELALGKNILVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIRKY 693

[Close]
BLAST of CmaCh00G003150 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-08
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1    MPEIDRFDITLKLELAKAMSPCIIWIPKMNDLN 34
            M EIDRF ITL+ ELAKAMSPCIIWIP ++DL+
Sbjct: 1726 MLEIDRFYITLQFELAKAMSPCIIWIPNIHDLD 1758

[Close]
BLAST of CmaCh00G003150 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-08
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1    MPEIDRFDITLKLELAKAMSPCIIWIPKMNDLN 34
            M EIDRF ITL+ ELAKAMSPCIIWIP ++DL+
Sbjct: 1726 MLEIDRFYITLQFELAKAMSPCIIWIPNIHDLD 1758

The following BLAST results are available for this feature:
BLAST of CmaCh00G003150 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8S8X92.2e-1586.67DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB P... [more]
Q06RD92.2e-1586.67DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum OX=126431 GN=rpo... [more]
Q3C1G72.2e-1586.67DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB... [more]
Q33C462.2e-1586.67DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN... [more]
Q2MIJ52.2e-1586.67DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum OX=147425 GN=r... [more]
BLAST of CmaCh00G003150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1C9JC067.2e-1485.11DNA-directed RNA polymerase subunit beta OS=Helwingia himalaica OX=1902425 GN=rp... [more]
G0Y3982.7e-1386.96DNA-directed RNA polymerase (Fragment) OS=Sisyrinchium striatum OX=59001 GN=rpoB... [more]
A0A0S2IFG32.7e-1386.96DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=rpoB P... [more]
A0A0S2IE412.7e-1386.96DNA-directed RNA polymerase subunit beta OS=Cucurbita argyrosperma OX=34294 GN=r... [more]
A0A223GEU92.7e-1386.96DNA-directed RNA polymerase (Fragment) OS=Sisyrinchium macrocarpum OX=1053831 GN... [more]
BLAST of CmaCh00G003150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3625926.15.1e-1483.02hypothetical protein FXO37_30605 [Capsicum annuum][more]
YP_009306462.11.5e-1385.11DNA-directed RNA polymerase beta subunit [Helwingia himalaica] >AOP19378.1 DNA-d... [more]
AEJ90756.15.7e-1386.96RNA polymerase beta subunit, partial [Sisyrinchium macrocarpum subsp. macrocarpu... [more]
YP_009175759.15.7e-1386.96RNA polymerase beta subunit [Astragalus mongholicus var. nakaianus] >ALH42737.1 ... [more]
ACN42505.15.7e-1386.96RNA polymerase beta subunit, partial [Schnella siqueirae][more]
BLAST of CmaCh00G003150 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00190.15.5e-1477.78RNA polymerase subunit beta [more]
ATCG00860.15.9e-0875.76Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.15.9e-0875.76Chloroplast Ycf2;ATPase, AAA type, core [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 59..143
e-value: 1.6E-8
score: 36.2
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 97..144
e-value: 3.9E-13
score: 49.2
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 98..145
NoneNo IPR availablePANTHERPTHR20856:SF20DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 98..145
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 99..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G003150.1CmaCh00G003150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding