CmaCh00G003050 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G003050
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionChloroplast envelope membrane protein
LocationCma_Chr00: 22789586 .. 22789962 (-)
RNA-Seq ExpressionCmaCh00G003050
SyntenyCmaCh00G003050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAGGATCATATCCATACCATTTTGCACTTCTCAACAAATAGAATCTGTTTCATTATTCTAAGTGGTTATTCTCTATTCTTGGTAATTAAGAACTTGTTATTCTTCACTCTTGGGTTCACGAGTTCCTATATAATTTAAGCGACACAATCAAAGCTTTTTCTATTCTTTTATTAACTGATTTATGTATAGGTATAGGATTCCATTCGCCCCATGGTTGGGAGCTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAACAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

mRNA sequence

ATGAATGAGGATCATATCCATACCATTTTGCACTTCTCAACAAATAGAATCTGTTTCATTATTCTAAGTGGTTATTCTCTATTCTTGGTAATTAAGAACTTGTTATTCTTCACTCTTGGGTTCACGAGTATAGGATTCCATTCGCCCCATGGTTGGGAGCTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAACAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Coding sequence (CDS)

ATGAATGAGGATCATATCCATACCATTTTGCACTTCTCAACAAATAGAATCTGTTTCATTATTCTAAGTGGTTATTCTCTATTCTTGGTAATTAAGAACTTGTTATTCTTCACTCTTGGGTTCACGAGTATAGGATTCCATTCGCCCCATGGTTGGGAGCTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAACAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Protein sequence

MNEDHIHTILHFSTNRICFIILSGYSLFLVIKNLLFFTLGFTSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDTTNIGSLFKSSISVTCSD
Homology
BLAST of CmaCh00G003050 vs. ExPASy Swiss-Prot
Match: A0ZZ47 (Chloroplast envelope membrane protein OS=Gossypium barbadense OX=3634 GN=cemA PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-27
Identity = 66/104 (63.46%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSL---------------FL-----VIKNLLFFTLGF 61
           NEDHIHTILHFSTN ICF+ILSGYS+               FL      IK      L  
Sbjct: 100 NEDHIHTILHFSTNLICFVILSGYSILGNEELLILNSWAQEFLYNLSDTIKAFSILLLTD 159

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGS+YKDFGF+HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSIYKDFGFTHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. ExPASy Swiss-Prot
Match: Q2L922 (Chloroplast envelope membrane protein OS=Gossypium hirsutum OX=3635 GN=cemA PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-27
Identity = 66/104 (63.46%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSL---------------FL-----VIKNLLFFTLGF 61
           NEDHIHTILHFSTN ICF+ILSGYS+               FL      IK      L  
Sbjct: 100 NEDHIHTILHFSTNLICFVILSGYSILGNEELLILNSWVQEFLYNLSDTIKAFSILLLTD 159

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGS+YKDFGF+HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSIYKDFGFAHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. ExPASy Swiss-Prot
Match: B1NWG2 (Chloroplast envelope membrane protein OS=Manihot esculenta OX=3983 GN=cemA PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.4e-26
Identity = 67/104 (64.42%), Postives = 70/104 (67.31%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSL---------------FL-----VIKNLLFFTLGF 61
           NED IHTILHFSTN ICFIILSGYS+               FL      IK      L  
Sbjct: 102 NEDRIHTILHFSTNIICFIILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTD 161

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF+HNDQI+SGLVST PVILDT
Sbjct: 162 LCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 205

BLAST of CmaCh00G003050 vs. ExPASy Swiss-Prot
Match: Q0G9K7 (Chloroplast envelope membrane protein OS=Liriodendron tulipifera OX=3415 GN=cemA PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-26
Identity = 66/104 (63.46%), Postives = 69/104 (66.35%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSL---------------FL-----VIKNLLFFTLGF 61
           NEDHIH ILHFSTN ICF ILSGYS+               FL      IK      L  
Sbjct: 100 NEDHIHIILHFSTNIICFAILSGYSILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTD 159

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF+HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. ExPASy Swiss-Prot
Match: Q0ZJ08 (Chloroplast envelope membrane protein OS=Vitis vinifera OX=29760 GN=cemA PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-26
Identity = 66/104 (63.46%), Postives = 70/104 (67.31%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSL---------------FL-----VIKNLLFFTLGF 61
           NED IHTILHFSTN ICF+ILSGYS+               FL      IK      L  
Sbjct: 100 NEDPIHTILHFSTNIICFVILSGYSILGNEELLILNSWIQQFLYNLSDTIKAFSILLLTD 159

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF+HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. ExPASy TrEMBL
Match: A0A7M1CI21 (envelope membrane protein, chloroplastic OS=Agastache rugosa OX=39271 GN=cemA PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.6e-25
Identity = 67/104 (64.42%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSL---------------FL-----VIKNLLFFTLGF 61
           NEDHIHTILHFSTN ICF+ILSGYS+               FL      +K  L   L  
Sbjct: 100 NEDHIHTILHFSTNIICFVILSGYSILGNEELVILNSWAQEFLYNLSDTVKAFLILLLTD 159

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSVYKDFGFGHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. ExPASy TrEMBL
Match: A0A251VFK2 (Putative chloroplast envelope membrane protein, CemA OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0044891 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.6e-25
Identity = 76/123 (61.79%), Postives = 78/123 (63.41%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSL---------------FL-----VIKNLLFFTLGF 61
           NE  IHTILHFSTN ICFIILSGYS+               FL      IK      L  
Sbjct: 29  NEGRIHTILHFSTNIICFIILSGYSILGNKELVILNSWAQEFLYNLSDTIKAFSLLLLTD 88

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT--TNIGSLFKSSISVT 103
             IGFHSPHGWELMIG VYKDFGF HNDQI+SGLVST PVILDT       LFKS ISVT
Sbjct: 89  LCIGFHSPHGWELMIGFVYKDFGFVHNDQIISGLVSTFPVILDTILKYDFPLFKSCISVT 148

BLAST of CmaCh00G003050 vs. ExPASy TrEMBL
Match: A0A2L0VCX4 (Chloroplast envelope membrane protein OS=Fraxinus chiisanensis OX=490838 GN=cemA PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.1e-25
Identity = 69/104 (66.35%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSLF----LVIKNL----LFFTLGFT----------- 61
           NEDHIHTILHFSTN ICF+ILSGYS+F    LVI N       + L  T           
Sbjct: 100 NEDHIHTILHFSTNIICFVILSGYSIFGNEELVILNSWAQEFLYNLSDTVKAFSILLLTD 159

Query: 62  -SIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSVYKDFGFVHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. ExPASy TrEMBL
Match: A0A481X5T9 (envelope membrane protein, chloroplastic OS=Gonocaryum lobbianum OX=2545981 GN=cemA PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.1e-25
Identity = 69/104 (66.35%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSLF----LVIKNL----LFFTLGFT----------- 61
           NEDHIHTILHFSTN ICF+ILSGYS+F    LVI N       + L  T           
Sbjct: 104 NEDHIHTILHFSTNIICFVILSGYSIFGNEELVILNSWAQEFLYNLSDTIKAFSILLLTD 163

Query: 62  -SIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF HNDQI+SGLVST PVILDT
Sbjct: 164 LCIGFHSPHGWELMIGSVYKDFGFVHNDQIISGLVSTFPVILDT 207

BLAST of CmaCh00G003050 vs. ExPASy TrEMBL
Match: A0A2P1M5Z4 (envelope membrane protein, chloroplastic OS=Forsythia giraldiana OX=205689 GN=cemA PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.1e-25
Identity = 69/104 (66.35%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSLF----LVIKNL----LFFTLGFT----------- 61
           NEDHIHTILHFSTN ICF+ILSGYS+F    LVI N       + L  T           
Sbjct: 100 NEDHIHTILHFSTNIICFVILSGYSIFGNEELVILNSWAQEFLYNLSDTVKAFSILLLTD 159

Query: 62  -SIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSVYKDFGFFHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. NCBI nr
Match: YP_010024343.1 (chloroplast envelope membrane protein [Agastache rugosa] >QOP63951.1 chloroplast envelope membrane protein [Agastache rugosa] >QUB07778.1 chloroplast envelope membrane protein [Agastache rugosa])

HSP 1 Score: 123.6 bits (309), Expect = 9.6e-25
Identity = 67/104 (64.42%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSL---------------FL-----VIKNLLFFTLGF 61
           NEDHIHTILHFSTN ICF+ILSGYS+               FL      +K  L   L  
Sbjct: 100 NEDHIHTILHFSTNIICFVILSGYSILGNEELVILNSWAQEFLYNLSDTVKAFLILLLTD 159

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSVYKDFGFGHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. NCBI nr
Match: YP_009578061.1 (chloroplast envelope membrane protein [Gonocaryum lobbianum] >QBK32678.1 chloroplast envelope membrane protein [Gonocaryum lobbianum])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 69/104 (66.35%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSLF----LVIKNL----LFFTLGFT----------- 61
           NEDHIHTILHFSTN ICF+ILSGYS+F    LVI N       + L  T           
Sbjct: 104 NEDHIHTILHFSTNIICFVILSGYSIFGNEELVILNSWAQEFLYNLSDTIKAFSILLLTD 163

Query: 62  -SIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF HNDQI+SGLVST PVILDT
Sbjct: 164 LCIGFHSPHGWELMIGSVYKDFGFVHNDQIISGLVSTFPVILDT 207

BLAST of CmaCh00G003050 vs. NCBI nr
Match: YP_009751497.1 (envelope membrane carbon uptake protein [Thladiantha dubia] >QIT03978.1 envelope membrane carbon uptake protein [Thladiantha dubia])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 68/104 (65.38%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSL---------------FL-----VIKNLLFFTLGF 61
           NEDHIHTILHFSTN ICF+ILSGYS+               FL      IK      L  
Sbjct: 100 NEDHIHTILHFSTNIICFVILSGYSILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTD 159

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGFSHNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. NCBI nr
Match: YP_009468619.1 (chloroplast envelope membrane protein [Fraxinus chiisanensis] >AVA09461.1 chloroplast envelope membrane protein [Fraxinus chiisanensis] >AYQ95473.1 chloroplast envelope protein [Fraxinus chiisanensis])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 69/104 (66.35%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSLF----LVIKNL----LFFTLGFT----------- 61
           NEDHIHTILHFSTN ICF+ILSGYS+F    LVI N       + L  T           
Sbjct: 100 NEDHIHTILHFSTNIICFVILSGYSIFGNEELVILNSWAQEFLYNLSDTVKAFSILLLTD 159

Query: 62  -SIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSVYKDFGFVHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. NCBI nr
Match: YP_010125970.1 (chloroplast envelope membrane protein [Forsythia giraldiana] >AVP25763.1 chloroplast envelope membrane protein [Forsythia giraldiana] >AVP25985.1 chloroplast envelope membrane protein [Forsythia likiangensis] >QIV67449.1 chloroplast envelope membrane protein [Forsythia giraldiana])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 69/104 (66.35%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYSLF----LVIKNL----LFFTLGFT----------- 61
           NEDHIHTILHFSTN ICF+ILSGYS+F    LVI N       + L  T           
Sbjct: 100 NEDHIHTILHFSTNIICFVILSGYSIFGNEELVILNSWAQEFLYNLSDTVKAFSILLLTD 159

Query: 62  -SIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIGSVYKDFGF HNDQI+SGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGSVYKDFGFFHNDQIISGLVSTFPVILDT 203

BLAST of CmaCh00G003050 vs. TAIR 10
Match: ATCG00530.1 (CemA-like proton extrusion protein-related )

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-23
Identity = 61/104 (58.65%), Postives = 68/104 (65.38%), Query Frame = 0

Query: 2   NEDHIHTILHFSTNRICFIILSGYS------LFLV--------------IKNLLFFTLGF 61
           NE +IHTILHFSTN I F+ILSGYS      LF++              IK      L  
Sbjct: 100 NEYNIHTILHFSTNLISFVILSGYSFWGKEKLFILNSWVQEFLYNLSDTIKAFSILLLTD 159

Query: 62  TSIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT 86
             IGFHSPHGWELMIG +YKDFGF+H +QILSGLVST PVILDT
Sbjct: 160 LCIGFHSPHGWELMIGYIYKDFGFAHYEQILSGLVSTFPVILDT 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0ZZ473.7e-2763.46Chloroplast envelope membrane protein OS=Gossypium barbadense OX=3634 GN=cemA PE... [more]
Q2L9223.7e-2763.46Chloroplast envelope membrane protein OS=Gossypium hirsutum OX=3635 GN=cemA PE=3... [more]
B1NWG22.4e-2664.42Chloroplast envelope membrane protein OS=Manihot esculenta OX=3983 GN=cemA PE=3 ... [more]
Q0G9K75.3e-2663.46Chloroplast envelope membrane protein OS=Liriodendron tulipifera OX=3415 GN=cemA... [more]
Q0ZJ085.3e-2663.46Chloroplast envelope membrane protein OS=Vitis vinifera OX=29760 GN=cemA PE=3 SV... [more]
Match NameE-valueIdentityDescription
A0A7M1CI214.6e-2564.42envelope membrane protein, chloroplastic OS=Agastache rugosa OX=39271 GN=cemA PE... [more]
A0A251VFK24.6e-2561.79Putative chloroplast envelope membrane protein, CemA OS=Helianthus annuus OX=423... [more]
A0A2L0VCX46.1e-2566.35Chloroplast envelope membrane protein OS=Fraxinus chiisanensis OX=490838 GN=cemA... [more]
A0A481X5T96.1e-2566.35envelope membrane protein, chloroplastic OS=Gonocaryum lobbianum OX=2545981 GN=c... [more]
A0A2P1M5Z46.1e-2566.35envelope membrane protein, chloroplastic OS=Forsythia giraldiana OX=205689 GN=ce... [more]
Match NameE-valueIdentityDescription
YP_010024343.19.6e-2564.42chloroplast envelope membrane protein [Agastache rugosa] >QOP63951.1 chloroplast... [more]
YP_009578061.11.3e-2466.35chloroplast envelope membrane protein [Gonocaryum lobbianum] >QBK32678.1 chlorop... [more]
YP_009751497.11.3e-2465.38envelope membrane carbon uptake protein [Thladiantha dubia] >QIT03978.1 envelope... [more]
YP_009468619.11.3e-2466.35chloroplast envelope membrane protein [Fraxinus chiisanensis] >AVA09461.1 chloro... [more]
YP_010125970.11.3e-2466.35chloroplast envelope membrane protein [Forsythia giraldiana] >AVP25763.1 chlorop... [more]
Match NameE-valueIdentityDescription
ATCG00530.11.5e-2358.65CemA-like proton extrusion protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004282Chloroplast envelope membrane protein, CemAPFAMPF03040CemAcoord: 32..86
e-value: 9.3E-15
score: 55.2
IPR004282Chloroplast envelope membrane protein, CemAPANTHERPTHR33650CHLOROPLAST ENVELOPE MEMBRANE PROTEIN-RELATEDcoord: 2..85
NoneNo IPR availablePANTHERPTHR33650:SF2CHLOROPLAST ENVELOPE MEMBRANE PROTEINcoord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G003050.1CmaCh00G003050.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009536 plastid