CmaCh00G002550 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	polygalacturonase-like
Location	Cma_Chr00: 18356819 .. 18357697 (+)
RNA-Seq Expression	CmaCh00G002550
Synteny	CmaCh00G002550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTATCCATTACTGGCGATATTATTGATGGGCAAGGAACTCCCCTCTGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGCCCGGGTATGCAGAATTTAAGTTGGCTCCATATAAAAAAAATTTGAAACTTTTTCTTTAACCGAATGAAAATGATTGGATTAATTACAATATTATTTTAAATTTTTACTAATTCTCCCTTTTGATTGTTTTGAATTGATAGTCTTCAAATAAATGATGGAAAGAATTTGAACATCAATGGATTATTATCTTCAATTAACAGCCAATTGTTCAACATTGTAATGAATCGGTGCCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCATGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTAGAAACGGTGACGACTGCATCTCCATCGGTCCAGGCACATCCAACATGTGGATCGAAAGTATTACATGTGGACCTAGACATGGAATCAGGTAACTAAAGATAGATTAGGATGAACATGTTTAGAAATGTTTTTTAAAGGGTTTAAATAAATTTGTCACATTAATTTTTAGAAGATAATCTAAACGTTAAATTAAATTTGAATGATTAAAATATATTCTAAAGTTATTTTGAACGTGAGAAAAATGATTTAAATTATTTTAAAATTATTTTGGATAAAAATAGTTATATAATATATTAGGTTAGAGTGAGGAAATTAAAGGTTAGAAAACATTTGATATTTTGTTGAATGTGTTTTTAGCATTGGGAGCTTAGGGATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACGGGGACTCAGAATTAA

mRNA sequence

ATGGGCTATCCATTACTGGCGATATTATTGATGGGCAAGGAACTCCCCTCTGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGCCCGGTCTTCAAATAAATGATGGAAAGAATTTGAACATCAATGGATTATTATCTTCAATTAACAGCCAATTGTTCAACATTGTAATGAATCGGTGCCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCATGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTAGAAACGGTGACGACTGCATCTCCATCGGTCCAGGCACATCCAACATGTGGATCGAAAGTATTACATGTGGACCTAGACATGGAATCAGCATTGGGAGCTTAGGGATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACGGGGACTCAGAATTAA

Coding sequence (CDS)

ATGGGCTATCCATTACTGGCGATATTATTGATGGGCAAGGAACTCCCCTCTGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGCCCGGTCTTCAAATAAATGATGGAAAGAATTTGAACATCAATGGATTATTATCTTCAATTAACAGCCAATTGTTCAACATTGTAATGAATCGGTGCCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCATGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTAGAAACGGTGACGACTGCATCTCCATCGGTCCAGGCACATCCAACATGTGGATCGAAAGTATTACATGTGGACCTAGACATGGAATCAGCATTGGGAGCTTAGGGATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACGGGGACTCAGAATTAA

Protein sequence

MGYPLLAILLMGKELPSGIVNTQGRVAPLEPGLQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESITCGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN

Homology

[Close]

BLAST of CmaCh00G002550 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.1e-38
Identity = 80/125 (64.00%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 33  LQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDV 92
           L  +D  N+ ++G L+S+NSQ+F+IV+N  QNV M  V V  + +SPNTDGIHV+ SS V
Sbjct: 150 LGFSDSNNIVVSG-LASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGV 209

Query: 93  TILNSNIRNGDDCISIGPGTSNMWIESITCGPRHGISIGSLGMEAEEDGVHNVTVKSSTF 152
           TILNS I  GDDC+SIGPGTSN+WIE + CGP HGISIGSLG E EE GV NVTVK+ TF
Sbjct: 210 TILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVTF 269

Query: 153 TGTQN 158
           +GTQN
Sbjct: 270 SGTQN 273

[Close]

BLAST of CmaCh00G002550 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-29
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 33  LQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDV 92
           L  +   N+ I+G L+SINSQ F+IV++   NV++  V V A  +SPNTDGIHV  S  V
Sbjct: 156 LVFSGSNNIKISG-LTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSV 215

Query: 93  TILNSNIRNGDDCISIGPGTSNMWIESITCGPRHGISIGSLGMEAEEDGVHNVTVKSSTF 152
            I NS I  GDDCISIGPG++N++I++I CGP HGISIGSLG   EE GV NVTV +  F
Sbjct: 216 HITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDF 275

Query: 153 TGTQN 158
            GT N
Sbjct: 276 MGTNN 279

[Close]

BLAST of CmaCh00G002550 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-24
Identity = 58/125 (46.40%), Postives = 82/125 (65.60%), Query Frame = 0


Query: 40  NLNINGL-------LSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDV 99
           NL+ N L       +++++S+ F++ +N+C+N+   R NV A  +SPNTDGIHV +SS V
Sbjct: 143 NLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSV 202

Query: 100 TILNSNIRNGDDCISIGPGTSNMWIESITCGPRHGISIGSLGMEAEEDGVHNVTVKSSTF 158
            I +SN   GDDCIS+G  T  ++I  +TCGP HGIS+GSLG   +E  V  V V++ TF
Sbjct: 203 NITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTF 262

[Close]

BLAST of CmaCh00G002550 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-24
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 47  LSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCI 106
           ++S+NS++F+I +  C+++    V V A   S NTDGIHV  S  VTI N+ I  GDDCI
Sbjct: 144 ITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGVTITNTKIATGDDCI 203

Query: 107 SIGPGTSNMWIESITCGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           SIGPG+ N+ I  + CGP HGISIGSLG    E  V  +TVK  TF+GT N
Sbjct: 204 SIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGCTFSGTMN 254

[Close]

BLAST of CmaCh00G002550 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-24
Identity = 65/157 (41.40%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 13  KELPSGIVNTQGRVA---------PLEPGLQINDGKNLNINGLLSSI---NSQLFNIVMN 72
           K    GI + QG +A              L +N   +   N L+  I   +S+LF+I + 
Sbjct: 119 KMFGGGIFDGQGSIAYEKNTCENREFRSKLPVNIRFDFVTNALIQDITSKDSKLFHINVF 178

Query: 73  RCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESI 132
            C+N+ + R+ + A  +SPNTDGIH+ +S  V I+ S+I+ GDDCISIG GT NM I+ I
Sbjct: 179 ACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEI 238

Query: 133 TCGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           TCGP HGISIGSLG    E+ V  + + + T T T N
Sbjct: 239 TCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSN 275

[Close]

BLAST of CmaCh00G002550 vs. ExPASy TrEMBL
Match: A0A6J1IIL8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473551 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.5e-70
Identity = 156/253 (61.66%), Postives = 156/253 (61.66%), Query Frame = 0


Query: 1   MGYPLLAILLMGKELPSGIVNTQGRVAPLEPG---------------------------- 60
           MGYPLLAILLMGKELP GIVNTQGRVAPLEPG                            
Sbjct: 1   MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 120

Query: 121 --------LQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGI 158
                   LQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGI
Sbjct: 121 CRPGHGISLQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGI 180

[Close]

BLAST of CmaCh00G002550 vs. ExPASy TrEMBL
Match: A0A6J1HFX3 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 121/157 (77.07%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 12  GKELPSGIVNTQG----------RVAPL-EPGLQINDGKNLNINGLLSSINSQLFNIVMN 71
           G  +  GI++ QG          +  P+    LQINDGKN+NING LSSINSQLF IVMN
Sbjct: 126 GLSITGGIIDGQGTPLWNCKHSRKSCPIGARSLQINDGKNVNING-LSSINSQLFGIVMN 185

Query: 72  RCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESI 131
           RCQNVHM+RVNVLAA DSPNTDGIHV+QSSDVTILNSNI NGDDCISIGPGTSNMWIE+I
Sbjct: 186 RCQNVHMSRVNVLAAGDSPNTDGIHVQQSSDVTILNSNIGNGDDCISIGPGTSNMWIETI 245

Query: 132 TCGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           TCGP HGISIGSLG+EAEEDGVHNVTVKSSTFTGTQN
Sbjct: 246 TCGPGHGISIGSLGIEAEEDGVHNVTVKSSTFTGTQN 281

[Close]

BLAST of CmaCh00G002550 vs. ExPASy TrEMBL
Match: A0A6J1IEV2 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56
Identity = 121/157 (77.07%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 12  GKELPSGIVNTQG----------RVAPL-EPGLQINDGKNLNINGLLSSINSQLFNIVMN 71
           G  +  GI++ QG          +  P+    LQINDGKN+NING LSSINSQLF+IVMN
Sbjct: 126 GLSITGGIIDGQGTPLWNCKHSRKSCPIGARSLQINDGKNVNING-LSSINSQLFSIVMN 185

Query: 72  RCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESI 131
           RCQNVHMTRVNVLAA DSPNTDGIHVRQSSDVTILNSNI NGDDCISIGPGTSNMWIESI
Sbjct: 186 RCQNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESI 245

Query: 132 TCGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           TCGP HGISIGSLGM+AEEDGVHN+TVKSSTFT T+N
Sbjct: 246 TCGPGHGISIGSLGMKAEEDGVHNITVKSSTFTRTRN 281

[Close]

BLAST of CmaCh00G002550 vs. ExPASy TrEMBL
Match: A0A6J1F489 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111440267 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.7e-55
Identity = 119/157 (75.80%), Postives = 129/157 (82.17%), Query Frame = 0


Query: 2   GYPLLAILLMGKELPSGIVNTQGRVAPL-EPGLQINDGKNLNINGLLSSINSQLFNIVMN 61
           G  +   ++ G+  P       G+  P+    LQINDGKN+NING LSSINSQLF I MN
Sbjct: 126 GLSITGGIIDGQGTPLWNCKHSGKSCPIGARSLQINDGKNVNING-LSSINSQLFGIGMN 185

Query: 62  RCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESI 121
           RCQNVHMTRVNVLAA DSPNTDGIHV+QSSDVTILNSNI NGDDCISIGPGTSNMWIE+I
Sbjct: 186 RCQNVHMTRVNVLAAGDSPNTDGIHVQQSSDVTILNSNIGNGDDCISIGPGTSNMWIETI 245

Query: 122 TCGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           TCGP HGISIGSLG+ AEEDGVHNVTVKSSTFTGTQN
Sbjct: 246 TCGPGHGISIGSLGIGAEEDGVHNVTVKSSTFTGTQN 281

[Close]

BLAST of CmaCh00G002550 vs. ExPASy TrEMBL
Match: A0A6J1ICF5 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472456 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.3e-54
Identity = 118/156 (75.64%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 2   GYPLLAILLMGKELPSGIVNTQGRVAPLEPGLQINDGKNLNINGLLSSINSQLFNIVMNR 61
           G PLL     GK  P G  +           LQINDGKN+NING LSSINSQLF+I MNR
Sbjct: 15  GTPLLNCKHSGKSCPIGAWS-----------LQINDGKNVNING-LSSINSQLFSIAMNR 74

Query: 62  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 121
           CQNVHMTRVNVLAA DSPNTDGIHV+QSSDVTILN NI NGDDCISIGPGTSNMW+ESIT
Sbjct: 75  CQNVHMTRVNVLAAGDSPNTDGIHVQQSSDVTILNLNIGNGDDCISIGPGTSNMWMESIT 134

Query: 122 CGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           CGP HGISI SLG++AEEDGVHNVTVKS+TFTG QN
Sbjct: 135 CGPGHGISIESLGIKAEEDGVHNVTVKSTTFTGIQN 158

[Close]

BLAST of CmaCh00G002550 vs. NCBI nr
Match: XP_022974794.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 156/253 (61.66%), Postives = 156/253 (61.66%), Query Frame = 0


Query: 1   MGYPLLAILLMGKELPSGIVNTQGRVAPLEPG---------------------------- 60
           MGYPLLAILLMGKELP GIVNTQGRVAPLEPG                            
Sbjct: 1   MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 120

Query: 121 --------LQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGI 158
                   LQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGI
Sbjct: 121 CRPGHGISLQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGI 180

[Close]

BLAST of CmaCh00G002550 vs. NCBI nr
Match: XP_022963687.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 121/157 (77.07%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 12  GKELPSGIVNTQG----------RVAPL-EPGLQINDGKNLNINGLLSSINSQLFNIVMN 71
           G  +  GI++ QG          +  P+    LQINDGKN+NING LSSINSQLF IVMN
Sbjct: 126 GLSITGGIIDGQGTPLWNCKHSRKSCPIGARSLQINDGKNVNING-LSSINSQLFGIVMN 185

Query: 72  RCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESI 131
           RCQNVHM+RVNVLAA DSPNTDGIHV+QSSDVTILNSNI NGDDCISIGPGTSNMWIE+I
Sbjct: 186 RCQNVHMSRVNVLAAGDSPNTDGIHVQQSSDVTILNSNIGNGDDCISIGPGTSNMWIETI 245

Query: 132 TCGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           TCGP HGISIGSLG+EAEEDGVHNVTVKSSTFTGTQN
Sbjct: 246 TCGPGHGISIGSLGIEAEEDGVHNVTVKSSTFTGTQN 281

[Close]

BLAST of CmaCh00G002550 vs. NCBI nr
Match: XP_022974795.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 228.8 bits (582), Expect = 3.3e-56
Identity = 121/157 (77.07%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 12  GKELPSGIVNTQG----------RVAPL-EPGLQINDGKNLNINGLLSSINSQLFNIVMN 71
           G  +  GI++ QG          +  P+    LQINDGKN+NING LSSINSQLF+IVMN
Sbjct: 126 GLSITGGIIDGQGTPLWNCKHSRKSCPIGARSLQINDGKNVNING-LSSINSQLFSIVMN 185

Query: 72  RCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESI 131
           RCQNVHMTRVNVLAA DSPNTDGIHVRQSSDVTILNSNI NGDDCISIGPGTSNMWIESI
Sbjct: 186 RCQNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESI 245

Query: 132 TCGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           TCGP HGISIGSLGM+AEEDGVHN+TVKSSTFT T+N
Sbjct: 246 TCGPGHGISIGSLGMKAEEDGVHNITVKSSTFTRTRN 281

[Close]

BLAST of CmaCh00G002550 vs. NCBI nr
Match: XP_022933258.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 225.3 bits (573), Expect = 3.6e-55
Identity = 119/157 (75.80%), Postives = 129/157 (82.17%), Query Frame = 0


Query: 2   GYPLLAILLMGKELPSGIVNTQGRVAPL-EPGLQINDGKNLNINGLLSSINSQLFNIVMN 61
           G  +   ++ G+  P       G+  P+    LQINDGKN+NING LSSINSQLF I MN
Sbjct: 126 GLSITGGIIDGQGTPLWNCKHSGKSCPIGARSLQINDGKNVNING-LSSINSQLFGIGMN 185

Query: 62  RCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESI 121
           RCQNVHMTRVNVLAA DSPNTDGIHV+QSSDVTILNSNI NGDDCISIGPGTSNMWIE+I
Sbjct: 186 RCQNVHMTRVNVLAAGDSPNTDGIHVQQSSDVTILNSNIGNGDDCISIGPGTSNMWIETI 245

Query: 122 TCGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           TCGP HGISIGSLG+ AEEDGVHNVTVKSSTFTGTQN
Sbjct: 246 TCGPGHGISIGSLGIGAEEDGVHNVTVKSSTFTGTQN 281

[Close]

BLAST of CmaCh00G002550 vs. NCBI nr
Match: XP_022973865.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-53
Identity = 118/156 (75.64%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 2   GYPLLAILLMGKELPSGIVNTQGRVAPLEPGLQINDGKNLNINGLLSSINSQLFNIVMNR 61
           G PLL     GK  P G  +           LQINDGKN+NING LSSINSQLF+I MNR
Sbjct: 15  GTPLLNCKHSGKSCPIGAWS-----------LQINDGKNVNING-LSSINSQLFSIAMNR 74

Query: 62  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 121
           CQNVHMTRVNVLAA DSPNTDGIHV+QSSDVTILN NI NGDDCISIGPGTSNMW+ESIT
Sbjct: 75  CQNVHMTRVNVLAAGDSPNTDGIHVQQSSDVTILNLNIGNGDDCISIGPGTSNMWMESIT 134

Query: 122 CGPRHGISIGSLGMEAEEDGVHNVTVKSSTFTGTQN 158
           CGP HGISI SLG++AEEDGVHNVTVKS+TFTG QN
Sbjct: 135 CGPGHGISIESLGIKAEEDGVHNVTVKSTTFTGIQN 158

[Close]

BLAST of CmaCh00G002550 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-37
Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 0


Query: 12  GKELPSGIVNTQGRVAPLEPGLQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVN 71
           GK  PSG              +      N+ ++G L+S+NSQ+F++V+N C NV +  V 
Sbjct: 133 GKNCPSGATT-----------IGFQSSSNVVVSG-LTSLNSQMFHVVINGCNNVKLQGVK 192

Query: 72  VLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESITCGPRHGISIG 131
           VLAA +SPNTDGIHV+ SS V+I N+ I  GDDC+SIGPGT+ +WIE++ CGP HGISIG
Sbjct: 193 VLAAGNSPNTDGIHVQSSSSVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIG 252

Query: 132 SLGMEAEEDGVHNVTVKSSTFTGTQN 158
           SLG ++ E GV NVTVK+ TFTGT N
Sbjct: 253 SLGKDSVESGVQNVTVKTVTFTGTDN 266

[Close]

BLAST of CmaCh00G002550 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 151.8 bits (382), Expect = 4.7e-37
Identity = 77/146 (52.74%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 12  GKELPSGIVNTQGRVAPLEPGLQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVN 71
           GK  PSG  +           +     +N+ I+G L+S+NSQ+F++ +N C NV +  V 
Sbjct: 135 GKNCPSGATS-----------IGFQSSRNVVISG-LTSLNSQMFHVAINGCSNVKLDGVK 194

Query: 72  VLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESITCGPRHGISIG 131
           V A  +SPNTDGIHV+ SS V+ILNS I  GDDC+SIGPGT+ +WIE++ CGP HGISIG
Sbjct: 195 VSADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGISIG 254

Query: 132 SLGMEAEEDGVHNVTVKSSTFTGTQN 158
           SLG E+ E GV N+TVK++TFTGT+N
Sbjct: 255 SLGKESVEVGVQNITVKTATFTGTEN 268

[Close]

BLAST of CmaCh00G002550 vs. TAIR 10
Match: AT1G65570.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 144.4 bits (363), Expect = 7.5e-35
Identity = 68/125 (54.40%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 33  LQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDV 92
           L+  D  N+ I G+L S+NSQLF+I +NRC+N+ +  V ++A  +SPNTDGIH++ S+D+
Sbjct: 154 LRFMDSNNVKIKGVL-SLNSQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHIQLSTDI 213

Query: 93  TILNSNIRNGDDCISIGPGTSNMWIESITCGPRHGISIGSLGMEAEEDGVHNVTVKSSTF 152
            + N++I+ GDDCISIGPGT N+ ++ ITCGP HGISIGSL    EE GV NVTVK++ F
Sbjct: 214 EVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISIGSLAKSIEEQGVENVTVKNAVF 273

Query: 153 TGTQN 158
             T N
Sbjct: 274 VRTDN 277

[Close]

BLAST of CmaCh00G002550 vs. TAIR 10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 8.6e-31
Identity = 63/125 (50.40%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 33  LQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDV 92
           +  N  K++ I+G + S+NSQ+ ++ +N C NV +  V ++A  +SPNTDG HV+ S+ V
Sbjct: 148 ISFNSAKDVIISG-VKSMNSQVTHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQHSTGV 207

Query: 93  TILNSNIRNGDDCISIGPGTSNMWIESITCGPRHGISIGSLGMEAEEDGVHNVTVKSSTF 152
           T   S ++ GDDC++IGPGT N+ I  + CGP HG+SIGSL  E +EDGV NVTV SS F
Sbjct: 208 TFTGSTVQTGDDCVAIGPGTRNLLITKLACGPGHGVSIGSLAKELKEDGVENVTVSSSVF 267

Query: 153 TGTQN 158
           TG+QN
Sbjct: 268 TGSQN 271

[Close]

BLAST of CmaCh00G002550 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-30
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 33  LQINDGKNLNINGLLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDV 92
           L  +   N+ I+G L+SINSQ F+IV++   NV++  V V A  +SPNTDGIHV  S  V
Sbjct: 156 LVFSGSNNIKISG-LTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSV 215

Query: 93  TILNSNIRNGDDCISIGPGTSNMWIESITCGPRHGISIGSLGMEAEEDGVHNVTVKSSTF 152
            I NS I  GDDCISIGPG++N++I++I CGP HGISIGSLG   EE GV NVTV +  F
Sbjct: 216 HITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDF 275

Query: 153 TGTQN 158
            GT N
Sbjct: 276 MGTNN 279

The following BLAST results are available for this feature:

BLAST of CmaCh00G002550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	7.1e-38	64.00	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	2.7e-29	56.00	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
Q05967	1.2e-24	46.40	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
Q6H9K0	3.4e-24	51.35	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
Q39766	4.5e-24	41.40	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]

BLAST of CmaCh00G002550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IIL8	9.5e-70	61.66	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473551 PE=3 SV=1	[more]
A0A6J1HFX3	1.2e-56	77.07	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1	[more]
A0A6J1IEV2	1.6e-56	77.07	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1	[more]
A0A6J1F489	1.7e-55	75.80	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111440267 PE=3 SV=1	[more]
A0A6J1ICF5	7.3e-54	75.64	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472456 PE=3 SV=1	[more]

BLAST of CmaCh00G002550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974794.1	2.0e-69	61.66	polygalacturonase-like [Cucurbita maxima]	[more]
XP_022963687.1	2.5e-56	77.07	polygalacturonase-like [Cucurbita moschata]	[more]
XP_022974795.1	3.3e-56	77.07	polygalacturonase-like [Cucurbita maxima]	[more]
XP_022933258.1	3.6e-55	75.80	polygalacturonase-like [Cucurbita moschata]	[more]
XP_022973865.1	1.5e-53	75.64	polygalacturonase-like [Cucurbita maxima]	[more]

BLAST of CmaCh00G002550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43870.1	2.8e-37	52.74	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	4.7e-37	52.74	Pectin lyase-like superfamily protein	[more]
AT1G65570.1	7.5e-35	54.40	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	8.6e-31	50.40	Pectin lyase-like superfamily protein	[more]
AT2G43860.1	1.9e-30	56.00	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 33..157 e-value: 8.1E-37 score: 127.0
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 16..157 e-value: 1.1E-40 score: 141.4
None	No IPR available	PANTHER	PTHR31375:SF219	PUTATIVE-RELATED	coord: 29..157
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 29..157
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 32..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002550.1	CmaCh00G002550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098656	anion transmembrane transport
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0015698	inorganic anion transport
cellular_component	GO:0005741	mitochondrial outer membrane
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0008308	voltage-gated anion channel activity