CmaCh00G002490 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G002490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRibulose bisphosphate carboxylase large chain
LocationCma_Chr00: 18313491 .. 18314051 (+)
RNA-Seq ExpressionCmaCh00G002490
SyntenyCmaCh00G002490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTGAGATCTTGGCAGGAAGCATTTCGAGTAACTCCTCCACCGGGAGTTCCAAGGAAGCAGGGGCCCCTATAGCTGCTGAATCTTTTACTGGTACATGGACAACTGACCGATGGGCTTACCAACCAGTCTTGATCCTTACAAAGGACGATGCTATGGAATTATGGAATCGAGCCTCTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAGCTTATCCCTTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTGACGTCCATTGTGGTTAATGTATGTGGATTCAAGGCTCTGCGTGCTCTATGTCTGTTTGCGAATCCCTACAGCTTATATTCAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTCGCCCTCTATTGGGATGTACTATGTAAACAAAAATGGGGATTATCCGCTAAGAATTATTTTAGAGTCGTTTATGAATGTCTATGCGATGGACTTGATTTTACCAAAGATGTTGAAAAGGTTCATTCCCAACCATTTATGCGTTGTAGAGATCGTTTCCTATTTTGTGCGGAATTTCTCAATCACAGGC

mRNA sequence

ACTGAGATCTTGGCAGGAAGCATTTCGAGTAACTCCTCCACCGGGAGTTCCAAGGAAGCAGGGGCCCCTATAGCTGCTGAATCTTTTACTGGCTCTGCGTGCTCTATGTCTGTTTGCGAATCCCTACAGCTTATATTCAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTCGCCCTCTATTGGGATGTACTATGTAAACAAAAATGGGGATTATCCGCTAAGAATTATTTTAGAGTCGTTTATGAATGTCTATGCGATGGACTTGATTTTACCAAAGATGTTGAAAAGGTTCATTCCCAACCATTTATGCGTTGTAGAGATCGTTTCCTATTTTGTGCGGAATTTCTCAATCACAGGC

Coding sequence (CDS)

ACTGAGATCTTGGCAGGAAGCATTTCGAGTAACTCCTCCACCGGGAGTTCCAAGGAAGCAGGGGCCCCTATAGCTGCTGAATCTTTTACTGGCTCTGCGTGCTCTATGTCTGTTTGCGAATCCCTACAGCTTATATTCAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTCGCCCTCTATTGGGATGTACTATGTAAACAAAAATGGGGATTATCCGCTAAGAATTATTTTAGAGTCGTTTATGAATGTCTATGCGATGGACTTGATTTTACCAAAGATGTTGAAAAGGTTCATTCCCAACCATTTATGCGTTGTAGAGATCGTTTCCTATTTTGTGCGGAATTTCTCAATCACAGGC

Protein sequence

TEILAGSISSNSSTGSSKEAGAPIAAESFTGSACSMSVCESLQLIFKLSKARLMVSRSPSIGMYYVNKNGDYPLRIILESFMNVYAMDLILPKMLKRFIPNHLCVVEIVSYFVRNFSITG
Homology
[Close]
BLAST of CmaCh00G002490 vs. ExPASy TrEMBL
Match: A0A5H2XQ99 (Ribulose bisphosphate carboxylase large chain OS=Prunus dulcis OX=3755 GN=Prudu_1423S000200 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 66  VNKNGDYPLRIILESFMNVYAMDLILPKMLKRFIPNHLCVVEIVSYFV 114
           +N N  YPLRI +E FMNV A+DLILPKM++  IPNHLCV E VSYFV
Sbjct: 152 LNLNWGYPLRITVEQFMNVSAVDLILPKMMRMLIPNHLCVGETVSYFV 199

[Close]
BLAST of CmaCh00G002490 vs. NCBI nr
Match: BBN70098.1 (hypothetical protein Prudu_1423S000200 [Prunus dulcis])

HSP 1 Score: 68.9 bits (167), Expect = 3.3e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 66  VNKNGDYPLRIILESFMNVYAMDLILPKMLKRFIPNHLCVVEIVSYFV 114
           +N N  YPLRI +E FMNV A+DLILPKM++  IPNHLCV E VSYFV
Sbjct: 152 LNLNWGYPLRITVEQFMNVSAVDLILPKMMRMLIPNHLCVGETVSYFV 199

The following BLAST results are available for this feature:
BLAST of CmaCh00G002490 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh00G002490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5H2XQ991.6e-0868.75Ribulose bisphosphate carboxylase large chain OS=Prunus dulcis OX=3755 GN=Prudu_... [more]
BLAST of CmaCh00G002490 vs. NCBI nr
Match NameE-valueIdentityDescription
BBN70098.13.3e-0868.75hypothetical protein Prudu_1423S000200 [Prunus dulcis][more]
BLAST of CmaCh00G002490 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G002490.1CmaCh00G002490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
cellular_component GO:0009507 chloroplast
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity