CmaCh00G002420 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G002420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionDNA ligase
LocationCma_Chr00: 17158239 .. 17158887 (-)
RNA-Seq ExpressionCmaCh00G002420
SyntenyCmaCh00G002420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCATAAACCTCTCCTCTCCCTCACCTTCCTCCTCCTCTTTCTGGCTTTCGCCTTTCTCACTTCTTCCACCGCTGCTCCCACCACACGTAAGTAAGTCCCCTTTTTTCTTTCACTTTCTACTGATTTTCTCTAATCAATCTCTCAATTTTCTCGTCTTCCAGCAATCCTGCAATCAAATTTTGACGACCCATCTGCCCAACCTTCCGTTTTCCAGGTCTCTCTCTCCCTCTCTGTTTTTTCTCGAGAAAATTTGAAACAATTTTCTCAGCACCCAAACAGGTGTGATTGAGAAATTGAAGCGTGTTTTTGGTGTACAAATTTTGTAGGATTCGAGAGATTTGGAGATGAGGTTGGTGGGAAGATTGTCTGAAGGAAGAGTGGTTGTGGAGAACAATGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCCCCTGCGGCCAAACCGTAGTGAATTGTCCTTCTGTTTATTACATATGCATTACCAAATTCTAGAAATGGAAAAACTTGTTTGGAGTTTTTTGTTCCTAATATATGTAACTTTATTGGGGCTTAATTATTGTAGTTCTAATAAATGAACTTTATGATATAATAATTTATATAATTTATATTGACTGGCTTTGTAAATGAACTTGAG

mRNA sequence

ATGGGTCATAAACCTCTCCTCTCCCTCACCTTCCTCCTCCTCTTTCTGGCTTTCGCCTTTCTCACTTCTTCCACCGCTGCTCCCACCACACCAATCCTGCAATCAAATTTTGACGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTCGAGAGATTTGGAGATGAGGTTGGTGGGAAGATTGTCTGAAGGAAGAGTGGTTGTGGAGAACAATGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCCCCTGCGGCCAAACCGTAGTGAATTGTCCTTCTGTTTATTACATATGCATTACCAAATTCTAGAAATGGAAAAACTTGTTTGGAGTTTTTTGTTCCTAATATATGTAACTTTATTGGGGCTTAATTATTGTAGTTCTAATAAATGAACTTTATGATATAATAATTTATATAATTTATATTGACTGGCTTTGTAAATGAACTTGAG

Coding sequence (CDS)

ATGGGTCATAAACCTCTCCTCTCCCTCACCTTCCTCCTCCTCTTTCTGGCTTTCGCCTTTCTCACTTCTTCCACCGCTGCTCCCACCACACCAATCCTGCAATCAAATTTTGACGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTCGAGAGATTTGGAGATGAGGTTGGTGGGAAGATTGTCTGAAGGAAGAGTGGTTGTGGAGAACAATGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCCCCTGCGGCCAAACCGTAG

Protein sequence

MGHKPLLSLTFLLLFLAFAFLTSSTAAPTTPILQSNFDDPSAQPSVFQDSRDLEMRLVGRLSEGRVVVENNDYPGTGANNHHDPKSPAAKP
Homology
BLAST of CmaCh00G002420 vs. ExPASy TrEMBL
Match: A0A0A0LHJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.4e-17
Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 10 TFLLLFLAFAFL---TSSTAAPTTPILQSNFDDPSAQPSVFQDSRDLEM---RLVGRLSE 69
          TF LLFLAF+FL    SS A PTT IL+S FD PS Q  V QD RD+E+       RL E
Sbjct: 7  TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSFERLFE 66

Query: 70 GRVVVENNDYPGTGANNHHDPKSPA 89
          GR+++ENNDYPGTGANNHHDPKSPA
Sbjct: 67 GRLILENNDYPGTGANNHHDPKSPA 91

BLAST of CmaCh00G002420 vs. ExPASy TrEMBL
Match: A0A5A7UDI6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002430 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.9e-15
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 10 TFLLLFLAFAFLTSST---AAPTTPILQSNFD-DPSAQPSVFQDSRDLEM---RLVGRLS 69
          TF LLFLAF+FL SS+   A PTT IL+S F+  PS Q  V +D RDLE+       RL 
Sbjct: 7  TFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEIIDGDSFERLF 66

Query: 70 EGRVVVENNDYPGTGANNHHDPKSPA 89
          EGR+++ENNDYPGTGANNHHDPKSPA
Sbjct: 67 EGRLILENNDYPGTGANNHHDPKSPA 92

BLAST of CmaCh00G002420 vs. ExPASy TrEMBL
Match: A0A6A6KJS2 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.6e-11
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 1  MGHKPLLSLTFLLLFLAFAFLTSSTAAPTTPILQSNFDDPSA-QPSVFQDSRDLEM--RL 60
          M HK  LS+  LLLFL F+F+ SS A P+T  L+S  ++PS+ Q  + QD+ DL +    
Sbjct: 1  MVHKGFLSVRLLLLFLGFSFVLSSLAVPSTRSLKSTEENPSSVQDFLTQDAMDLNLVEEQ 60

Query: 61 VGRLSE----GRVVVENNDYPGTGANNHHDPKSP 88
          V  L E    GR+ +EN DYPGTGANNHHDPK+P
Sbjct: 61 VLDLGEGYINGRMDLENTDYPGTGANNHHDPKTP 94

BLAST of CmaCh00G002420 vs. ExPASy TrEMBL
Match: A0A2R6Q481 (Protein Rev like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23042 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 0

Query: 1  MGHKPLLSLTFLLLFLAFAFLTSSTAAPTTPILQSNFDDPSAQPSVFQDSRDLEMRLVGR 60
          M HK  L L  L+LFL F+F+ SS A PT+  L+S  DDP  Q  +  D  +++M + G 
Sbjct: 1  MEHKGWLPL--LVLFLGFSFVLSSVAVPTSRSLKSFLDDPLVQDLLAPDG-EMDMGMDGE 60

Query: 61 LS-------EGRVVVENNDYPGTGANNHHDPKSP 88
          LS       +GR+ +ENNDYPGTGANNHHDP +P
Sbjct: 61 LSNVEEFSMQGRMDLENNDYPGTGANNHHDPNAP 91

BLAST of CmaCh00G002420 vs. ExPASy TrEMBL
Match: A0A5B6ZB32 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 1   MGHKPLLSLTFLLLFLAFAFLTSSTAAPTTPILQSNFDDPSAQPSVFQDSRDLEM---RL 60
           M HK  L L  L+LFL F F+ SS A PT+  L+S   DP+AQ    Q   D+      L
Sbjct: 38  MEHKAFLRL--LVLFLGFYFVLSSAAVPTSRSLKSIEKDPTAQDLFAQSVMDMRTDGELL 97

Query: 61  VGRLSEGRVVVENNDYPGTGANNHHDPKSP 88
             R  EGR+ +E+NDYPGTGANNHHDPK+P
Sbjct: 98  EERFIEGRMDIESNDYPGTGANNHHDPKTP 125

BLAST of CmaCh00G002420 vs. NCBI nr
Match: KAG6596972.1 (hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028446.1 hypothetical protein SDJN02_09627 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 9.5e-32
Identity = 78/98 (79.59%), Postives = 82/98 (83.67%), Query Frame = 0

Query: 1  MGHKPLLSLTFLLLFLAFAFLTSSTAAPTTPILQSNFDDPSAQPSVFQDSRDLEMR---- 60
          MGHKPLL LTFLLLFLAFAFL SSTA PTT +LQSNFDDPSAQPSVFQD RDLE+     
Sbjct: 1  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDS 60

Query: 61 ---LVGRLSEGRVVVENNDYPGTGANNHHDPKSPAAKP 92
             +  RLSEGRVV+ENNDYPGTGANNHHDPKSPA KP
Sbjct: 61 LEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP 98

BLAST of CmaCh00G002420 vs. NCBI nr
Match: KAG7017658.1 (hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 57/89 (64.04%), Postives = 62/89 (69.66%), Query Frame = 0

Query: 1  MGHKPLLSL-TFLLLFLAFAFLTSSTAAPTTPILQSNFDDPSAQPSVFQDSRDLEMRLVG 60
          MG K  LSL   LLLFL F+ L SS A PTT I +S FD PSAQ  VFQD RDLE    G
Sbjct: 1  MGQKISLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFN--G 60

Query: 61 RLSEGRVVVENNDYPGTGANNHHDPKSPA 89
              GR+V+ENNDYPGTGANNHHDP +PA
Sbjct: 61 GDLFGRLVLENNDYPGTGANNHHDPNTPA 87

BLAST of CmaCh00G002420 vs. NCBI nr
Match: KGN59481.1 (hypothetical protein Csa_001422 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 10 TFLLLFLAFAFL---TSSTAAPTTPILQSNFDDPSAQPSVFQDSRDLEM---RLVGRLSE 69
          TF LLFLAF+FL    SS A PTT IL+S FD PS Q  V QD RD+E+       RL E
Sbjct: 7  TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSFERLFE 66

Query: 70 GRVVVENNDYPGTGANNHHDPKSPA 89
          GR+++ENNDYPGTGANNHHDPKSPA
Sbjct: 67 GRLILENNDYPGTGANNHHDPKSPA 91

BLAST of CmaCh00G002420 vs. NCBI nr
Match: KAG6580910.1 (hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 57/89 (64.04%), Postives = 61/89 (68.54%), Query Frame = 0

Query: 1  MGHKPLLSL-TFLLLFLAFAFLTSSTAAPTTPILQSNFDDPSAQPSVFQDSRDLEMRLVG 60
          MG K  LSL   LLLFL F+ L SS A PTT I +S FD PSAQ  VFQD RDLE    G
Sbjct: 1  MGQKISLSLQRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFN--G 60

Query: 61 RLSEGRVVVENNDYPGTGANNHHDPKSPA 89
              GR V+ENNDYPGTGANNHHDP +PA
Sbjct: 61 GDLFGRFVLENNDYPGTGANNHHDPNTPA 87

BLAST of CmaCh00G002420 vs. NCBI nr
Match: KAA0053852.1 (hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 8.0e-15
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 10 TFLLLFLAFAFLTSST---AAPTTPILQSNFD-DPSAQPSVFQDSRDLEM---RLVGRLS 69
          TF LLFLAF+FL SS+   A PTT IL+S F+  PS Q  V +D RDLE+       RL 
Sbjct: 7  TFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEIIDGDSFERLF 66

Query: 70 EGRVVVENNDYPGTGANNHHDPKSPA 89
          EGR+++ENNDYPGTGANNHHDPKSPA
Sbjct: 67 EGRLILENNDYPGTGANNHHDPKSPA 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHJ05.4e-1764.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1[more]
A0A5A7UDI63.9e-1562.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6A6KJS27.6e-1151.06Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1[more]
A0A2R6Q4811.3e-1048.94Protein Rev like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23... [more]
A0A5B6ZB321.7e-1051.11Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781... [more]
Match NameE-valueIdentityDescription
KAG6596972.19.5e-3279.59hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7017658.11.1e-1664.04hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma][more]
KGN59481.11.1e-1664.71hypothetical protein Csa_001422 [Cucumis sativus][more]
KAG6580910.11.9e-1664.04hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0053852.18.0e-1562.79hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..91
NoneNo IPR availablePANTHERPTHR33474TRANSMEMBRANE PROTEINcoord: 1..88
NoneNo IPR availablePANTHERPTHR33474:SF28PROTEIN, PUTATIVE-RELATEDcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G002420.1CmaCh00G002420.1mRNA