CmaCh00G002310 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Regulator of rDNA transcription protein 15
Location	Cma_Chr00: 16238455 .. 16239830 (-)
RNA-Seq Expression	CmaCh00G002310
Synteny	CmaCh00G002310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTGCCCCCCGCACACCGAGACCGGGGCAAGGGGAAAGCTTATTCGTTTCAGATCCTTGGCGCGACTTGCGCCGGTTTTGGTTTGGGCATCAGAGGGCGCACGAATGCTCCCCCCGACACAAAAGAGTTGGCAAACACGTTCGCGGGTCGTTTGGTGTTTAGGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTCGCGACGTCGCAGGCAGCGAACCGCCCACGTCGCCACGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAAGAAGCTGGCCGCGGAGGGATTCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACAGAATAGGATCGAAATCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGACAGAAGGGACGAGCCAATCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAA

mRNA sequence

ATGCTTTGCCCCCCGCACACCGAGACCGGGGCAAGGGGAAAGCTTATTCGTTTCAGATCCTTGGCGCGACTTGCGCCGGTTTTGGTTTGGGCATCAGAGGGCGCACGAATGCTCCCCCCGACACAAAAGAGTTGGCAAACACGTTCGCGGGTCGTTTGGTGTTTAGGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGACAGAAGGGACGAGCCAATCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAA

Coding sequence (CDS)

ATGCTTTGCCCCCCGCACACCGAGACCGGGGCAAGGGGAAAGCTTATTCGTTTCAGATCCTTGGCGCGACTTGCGCCGGTTTTGGTTTGGGCATCAGAGGGCGCACGAATGCTCCCCCCGACACAAAAGAGTTGGCAAACACGTTCGCGGGTCGTTTGGTGTTTAGGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGACAGAAGGGACGAGCCAATCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAA

Protein sequence

MLCPPHTETGARGKLIRFRSLARLAPVLVWASEGARMLPPTQKSWQTRSRVVWCLGIDNDPSAGSPTETLLRLLLPLNDKVLAESLKQHPPIPGRHRLWLRLGRAGGTTRPVKARSASPTEGTSQSVLTIGGPIDPTQGPTTSFLTATT

Homology

[Close]

BLAST of CmaCh00G002310 vs. ExPASy Swiss-Prot
Match: P0C5Q0 (Putative uncharacterized protein YLR154W-F OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YLR154W-F PE=5 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-05
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 37 MLPPTQKSWQTRSRVVWCLGIDNDPSAGSPTETLLRLLLPLNDKVLAES 86
          ML P QK+  ++      L   NDPSAGSPTETLLRLL+PLND+V   S
Sbjct: 1  MLLPKQKNPFSK-----LLNFFNDPSAGSPTETLLRLLVPLNDQVCPNS 44

[Close]

BLAST of CmaCh00G002310 vs. ExPASy TrEMBL
Match: A0A2N9IFN0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50755 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.3e-15
Identity = 67/154 (43.51%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 26  PVLVWASEGARMLPPT-QKSWQTRSRVVWCLGIDNDPSAGSPTETLLRLLLPLNDKVLAE 85
           P  VW  + A+ L P    ++  RS      G DNDPSAGSPTETLLRLLLPLNDKV   
Sbjct: 468 PPTVWGRKAAKPLAPCGYHAFSGRSAGA---GFDNDPSAGSPTETLLRLLLPLNDKVQWT 527

Query: 86  S------------LKQH-------------------PPIPGR--------HRLWLRLGRA 140
           S              +H                   PPI  R        + +W      
Sbjct: 528 SRDVAGSEPPTSPRSEHFTGPFNRQITPPTKNGHAPPPIESRKSSQSVNPYYVWT---CT 587

[Close]

BLAST of CmaCh00G002310 vs. ExPASy TrEMBL
Match: A0A2N9IDP5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50754 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.1e-14
Identity = 66/153 (43.14%), Postives = 75/153 (49.02%), Query Frame = 0


Query: 26  PVLVWASEGARMLPPT-QKSWQTRSRVVWCLGIDNDPSAGSPTETLLRLLLPLNDKVLAE 85
           P  VW  + A+ L P    ++  RS      G DNDPSAGSPTETLLRLLLPLNDKV   
Sbjct: 461 PPTVWGRKAAKPLAPCGYHAFSGRSAGA---GFDNDPSAGSPTETLLRLLLPLNDKVQWT 520

Query: 86  S------------LKQH-------------------PPIPGR--------HRLWLRLGRA 139
           S              +H                   PPI  R        + +W      
Sbjct: 521 SRDVAGSEPPTSPRSEHFTGPFNRQITPPTKNGHAPPPIESRKSSQSVNPYYVWT---CT 580

[Close]

BLAST of CmaCh00G002310 vs. ExPASy TrEMBL
Match: A0A2N9I9H1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50489 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.1e-14
Identity = 66/153 (43.14%), Postives = 75/153 (49.02%), Query Frame = 0


Query: 26  PVLVWASEGARMLPPT-QKSWQTRSRVVWCLGIDNDPSAGSPTETLLRLLLPLNDKVLAE 85
           P  VW  + A+ L P    ++  RS      G DNDPSAGSPTETLLRLLLPLNDKV   
Sbjct: 461 PPTVWGRKAAKPLAPCGYHAFSGRSAGA---GFDNDPSAGSPTETLLRLLLPLNDKVQWT 520

Query: 86  S------------LKQH-------------------PPIPGR--------HRLWLRLGRA 139
           S              +H                   PPI  R        + +W      
Sbjct: 521 SRDVAGSEPPTSPRSEHFTGPFNRQITPPTKNGHAPPPIESRKSSQSVNPYYVWT---CT 580

[Close]

BLAST of CmaCh00G002310 vs. ExPASy TrEMBL
Match: A0A0L9VE83 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g202400 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-12
Identity = 62/139 (44.60%), Postives = 69/139 (49.64%), Query Frame = 0


Query: 50  RVVWCLGIDNDPSAGSPTETLLRLLLPLNDKV---------------------------- 109
           R++   GIDNDPSAG PT+TLLRLLLPLNDKV                            
Sbjct: 552 RILGTNGIDNDPSAGLPTKTLLRLLLPLNDKVQWTSHHVTGSEPPTSPQSEHFTGPFNRQ 611

Query: 110 LAESLKQ---HPPIPGR--------HRLWLRLGRAGGTTRPVKARSASPTEGTSQSVLTI 150
           +A   K     PPI  R        + +W      GGTTRPVKARSASP EGTS+ V T 
Sbjct: 612 IAPPTKNGHAPPPIESRKISQSVNPYYVWT---CTGGTTRPVKARSASPAEGTSRPVHTR 671

[Close]

BLAST of CmaCh00G002310 vs. ExPASy TrEMBL
Match: A0A072TIH7 (Senescence-associated protein OS=Medicago truncatula OX=3880 GN=MTR_0052s0070 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.3e-11
Identity = 65/182 (35.71%), Postives = 71/182 (39.01%), Query Frame = 0


Query: 56  GIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLK 115
           GIDNDPSAGSPTETLLRLLLPLNDKV                            +A   K
Sbjct: 692 GIDNDPSAGSPTETLLRLLLPLNDKVQWTSHNVAGSGPPTSPQSEHFTGPFNRQIAPPTK 751

Query: 116 Q---HPPIPGR--------HRLW------------------------------------- 140
                PPI  R        + +W                                     
Sbjct: 752 NGHAPPPIESRKSSQSVNPYYVWTCGVLKATSADPWSASFMVETRTLFVFHKSKNFTSDY 811

[Close]

BLAST of CmaCh00G002310 vs. NCBI nr
Match: KOM53365.1 (hypothetical protein LR48_Vigan09g202400 [Vigna angularis])

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-12
Identity = 62/139 (44.60%), Postives = 69/139 (49.64%), Query Frame = 0


Query: 50  RVVWCLGIDNDPSAGSPTETLLRLLLPLNDKV---------------------------- 109
           R++   GIDNDPSAG PT+TLLRLLLPLNDKV                            
Sbjct: 552 RILGTNGIDNDPSAGLPTKTLLRLLLPLNDKVQWTSHHVTGSEPPTSPQSEHFTGPFNRQ 611

Query: 110 LAESLKQ---HPPIPGR--------HRLWLRLGRAGGTTRPVKARSASPTEGTSQSVLTI 150
           +A   K     PPI  R        + +W      GGTTRPVKARSASP EGTS+ V T 
Sbjct: 612 IAPPTKNGHAPPPIESRKISQSVNPYYVWT---CTGGTTRPVKARSASPAEGTSRPVHTR 671

[Close]

BLAST of CmaCh00G002310 vs. NCBI nr
Match: KEH16994.1 (senescence-associated protein [Medicago truncatula])

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 64/176 (36.36%), Postives = 70/176 (39.77%), Query Frame = 0


Query: 56  GIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLK 115
           GIDNDPSAGSPTETLLRLLLPLNDKV                            +A   K
Sbjct: 676 GIDNDPSAGSPTETLLRLLLPLNDKVQWTSHNVAGSGPPTSPQSEHFTGPFNRQIAPPTK 735

Query: 116 Q---HPPIPGR--------HRLW------------------------------------- 139
                PPI  R        + +W                                     
Sbjct: 736 NGHAPPPIESRKSSQSVNPYYVWTCGVLKATSADPWQMLSQLFVFHKSKNFTSDYEIRMP 795

[Close]

BLAST of CmaCh00G002310 vs. NCBI nr
Match: KEH17021.1 (senescence-associated protein [Medicago truncatula])

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 65/182 (35.71%), Postives = 71/182 (39.01%), Query Frame = 0


Query: 56  GIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLK 115
           GIDNDPSAGSPTETLLRLLLPLNDKV                            +A   K
Sbjct: 692 GIDNDPSAGSPTETLLRLLLPLNDKVQWTSHNVAGSGPPTSPQSEHFTGPFNRQIAPPTK 751

Query: 116 Q---HPPIPGR--------HRLW------------------------------------- 140
                PPI  R        + +W                                     
Sbjct: 752 NGHAPPPIESRKSSQSVNPYYVWTCGVLKATSADPWSASFMVETRTLFVFHKSKNFTSDY 811

[Close]

BLAST of CmaCh00G002310 vs. NCBI nr
Match: OIV89726.1 (hypothetical protein TanjilG_03599 [Lupinus angustifolius])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 55/118 (46.61%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 60  DPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ--- 119
           D + GSPTETLLRLLLPLNDKV                            +A   K    
Sbjct: 598 DTAEGSPTETLLRLLLPLNDKVQWTSHNVAGSEPPTSPQSEHFTGPFNRQIAPPTKNGHA 657

Query: 120 HPPIPGR--------HRLWLRLGRAGGTTRPVKARSASPTEGTSQSVLTIGGPIDPTQ 139
            PPI  R        + +W     AGGTTRPVKARSASP EGTS+ V T GGPIDPTQ
Sbjct: 658 PPPIESRKSSQSVNPYYVW-TCNSAGGTTRPVKARSASPAEGTSRPVHTSGGPIDPTQ 714

[Close]

BLAST of CmaCh00G002310 vs. NCBI nr
Match: KAG9438743.1 (hypothetical protein H6P81_021338 [Aristolochia fimbriata])

HSP 1 Score: 71.2 bits (173), Expect = 8.3e-09
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 76  PLNDKVL-AESLKQHP-----PIPGRHRLWLRLGRAGGTTRPVKARSASPTEGT-SQSVL 135
           P N K L +  +++ P     PIPGRHRLWLRLGR GGTTRPVKAR+  P EG  S    
Sbjct: 10  PRNPKTLISHKVRRSPKSNIRPIPGRHRLWLRLGRTGGTTRPVKARAHRPVEGAKSTCAH 69

Query: 136 TIGGPIDPTQ 139
             GGPIDPTQ
Sbjct: 70  PGGGPIDPTQ 79

The following BLAST results are available for this feature:

BLAST of CmaCh00G002310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C5Q0	3.4e-05	57.14	Putative uncharacterized protein YLR154W-F OS=Saccharomyces cerevisiae (strain A...	[more]

BLAST of CmaCh00G002310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IFN0	8.3e-15	43.51	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50755 PE=4 SV=1	[more]
A0A2N9IDP5	4.1e-14	43.14	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50754 PE=4 SV=1	[more]
A0A2N9I9H1	4.1e-14	43.14	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50489 PE=4 SV=1	[more]
A0A0L9VE83	1.7e-12	44.60	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g202400 PE...	[more]
A0A072TIH7	7.3e-11	35.71	Senescence-associated protein OS=Medicago truncatula OX=3880 GN=MTR_0052s0070 PE...	[more]

BLAST of CmaCh00G002310 vs. NCBI nr


Match Name	E-value	Identity	Description
KOM53365.1	3.6e-12	44.60	hypothetical protein LR48_Vigan09g202400 [Vigna angularis]	[more]
KEH16994.1	1.5e-10	36.36	senescence-associated protein [Medicago truncatula]	[more]
KEH17021.1	1.5e-10	35.71	senescence-associated protein [Medicago truncatula]	[more]
OIV89726.1	2.0e-10	46.61	hypothetical protein TanjilG_03599 [Lupinus angustifolius]	[more]
KAG9438743.1	8.3e-09	58.57	hypothetical protein H6P81_021338 [Aristolochia fimbriata]	[more]

BLAST of CmaCh00G002310 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002310.1	CmaCh00G002310.1	mRNA