CmaCh00G002260 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	rRNA intron-encoded homing endonuclease, putative
Location	Cma_Chr00: 16079748 .. 16080173 (+)
RNA-Seq Expression	CmaCh00G002260
Synteny	CmaCh00G002260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGCACCGATTGGCTCATCCCTTCTGTCGGCGATGCGCTCCTGGCCTTAACTGGTCGGGTCGTGCCTCCAGCGCTGTTACTTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGATCCTATTCTGTTGGACTTCGGGATCGGAGTAATGATTAACAGGGACAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGAATTTATGAAAGACGAACAACTGCGAAAGCATTTTCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGTCGACCAGGGATTGGCAGATGTTGCTTTAAGGACTCCGCCAGCNTGA

mRNA sequence

ATGGTGAGCACCGATTGGCTCATCCCTTCTGTCGGCGATGCGCTCCTGGCCTTAACTGGTCGGGTCGTGCCTCCAGCGCTACGAACAACTGCGAAAGCATTTTCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGTCGACCAGGGATTGGCAGATGTTGCTTTAAGGACTCCGCCAGCNTGA

Coding sequence (CDS)

ATGGTGAGCACCGATTGGCTCATCCCTTCTGTCGGCGATGCGCTCCTGGCCTTAACTGGTCGGGTCGTGCCTCCAGCGCTACGAACAACTGCGAAAGCATTTTCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGTCGACCAGGGATTGGCAGATGTTGCTTTAAGGACTCCGCCAGCNTGA

Protein sequence

MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTINDVDQGLADVALRTPPA

Homology

[Close]

BLAST of CmaCh00G002260 vs. ExPASy TrEMBL
Match: A0A0A0LDF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
          MVST  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 1  MVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 60

Query: 61 NDVDQGLADVALRTPPA 78
          ND DQGLADVALRTPPA
Sbjct: 61 NDADQGLADVALRTPPA 77

[Close]

BLAST of CmaCh00G002260 vs. ExPASy TrEMBL
Match: A0A6A5L4S7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00012869 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
           +V T  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 42  LVCTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 101

Query: 61  NDVDQGLADVALRTPPA 78
           ND DQG ADVA RTP A
Sbjct: 102 NDADQGSADVAFRTPLA 118

[Close]

BLAST of CmaCh00G002260 vs. ExPASy TrEMBL
Match: A0A6A5P2N0 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043791 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
           +V T  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 156 LVCTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 215

Query: 61  NDVDQGLADVALRTPPA 78
           ND DQG ADVA RTP A
Sbjct: 216 NDADQGSADVAFRTPLA 232

[Close]

BLAST of CmaCh00G002260 vs. ExPASy TrEMBL
Match: A0A6A5L9N6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046585 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
           +V T  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 128 LVCTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 187

Query: 61  NDVDQGLADVALRTPPA 78
           ND DQG ADVA RTP A
Sbjct: 188 NDADQGSADVAFRTPLA 204

[Close]

BLAST of CmaCh00G002260 vs. ExPASy TrEMBL
Match: A0A6A5LBQ2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045206 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
           +V T  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 176 LVCTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 235

Query: 61  NDVDQGLADVALRTPPA 78
           ND DQG ADVA RTP A
Sbjct: 236 NDADQGSADVAFRTPLA 252

[Close]

BLAST of CmaCh00G002260 vs. NCBI nr
Match: KAE8652002.1 (hypothetical protein Csa_021689 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-29
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
          MVST  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 1  MVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 60

Query: 61 NDVDQGLADVALRTPPA 78
          ND DQGLADVALRTPPA
Sbjct: 61 NDADQGLADVALRTPPA 77

[Close]

BLAST of CmaCh00G002260 vs. NCBI nr
Match: KAF1856092.1 (hypothetical protein Lal_00045206 [Lupinus albus])

HSP 1 Score: 127.9 bits (320), Expect = 3.8e-26
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
           +V T  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 176 LVCTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 235

Query: 61  NDVDQGLADVALRTPPA 78
           ND DQG ADVA RTP A
Sbjct: 236 NDADQGSADVAFRTPLA 252

[Close]

BLAST of CmaCh00G002260 vs. NCBI nr
Match: KAF1891686.1 (hypothetical protein Lal_00049258, partial [Lupinus albus])

HSP 1 Score: 127.9 bits (320), Expect = 3.8e-26
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
           +V T  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 246 LVCTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 305

Query: 61  NDVDQGLADVALRTPPA 78
           ND DQG ADVA RTP A
Sbjct: 306 NDADQGSADVAFRTPLA 322

[Close]

BLAST of CmaCh00G002260 vs. NCBI nr
Match: KAF1856185.1 (hypothetical protein Lal_00046585 [Lupinus albus])

HSP 1 Score: 127.9 bits (320), Expect = 3.8e-26
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
           +V T  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 128 LVCTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 187

Query: 61  NDVDQGLADVALRTPPA 78
           ND DQG ADVA RTP A
Sbjct: 188 NDADQGSADVAFRTPLA 204

[Close]

BLAST of CmaCh00G002260 vs. NCBI nr
Match: KAF1854967.1 (hypothetical protein Lal_00048035 [Lupinus albus] >KAF1854982.1 hypothetical protein Lal_00045102 [Lupinus albus] >KAF1855098.1 hypothetical protein Lal_00045009 [Lupinus albus] >KAF1855146.1 hypothetical protein Lal_00046616 [Lupinus albus] >KAF1855725.1 hypothetical protein Lal_00044249 [Lupinus albus])

HSP 1 Score: 127.9 bits (320), Expect = 3.8e-26
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MVSTDWLIPSVGDALLALTGRVVPPALRTTAKAFSKDVFINQERKLGARRRSDTVLVSTI 60
           +V T  L+PS GDALLALTGRVVPPALRTTAKAF+KDVFINQERKLGARRRSDTVLVSTI
Sbjct: 42  LVCTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTI 101

Query: 61  NDVDQGLADVALRTPPA 78
           ND DQG ADVA RTP A
Sbjct: 102 NDADQGSADVAFRTPLA 118

The following BLAST results are available for this feature:

BLAST of CmaCh00G002260 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh00G002260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDF7	1.1e-29	92.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1	[more]
A0A6A5L4S7	1.9e-26	85.71	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00012869 PE=4 SV=1	[more]
A0A6A5P2N0	1.9e-26	85.71	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043791 PE=4 SV=1	[more]
A0A6A5L9N6	1.9e-26	85.71	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046585 PE=4 SV=1	[more]
A0A6A5LBQ2	1.9e-26	85.71	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045206 PE=4 SV=1	[more]

BLAST of CmaCh00G002260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652002.1	2.2e-29	92.21	hypothetical protein Csa_021689 [Cucumis sativus]	[more]
KAF1856092.1	3.8e-26	85.71	hypothetical protein Lal_00045206 [Lupinus albus]	[more]
KAF1891686.1	3.8e-26	85.71	hypothetical protein Lal_00049258, partial [Lupinus albus]	[more]
KAF1856185.1	3.8e-26	85.71	hypothetical protein Lal_00046585 [Lupinus albus]	[more]
KAF1854967.1	3.8e-26	85.71	hypothetical protein Lal_00048035 [Lupinus albus] >KAF1854982.1 hypothetical pro...	[more]

BLAST of CmaCh00G002260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	INTRON-ENCODED HOMING ENDONUCLEASE, PUTATIVE-RELATED	coord: 27..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002260.1	CmaCh00G002260.1	mRNA