CmaCh00G002230 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Gag/pol protein
Location	Cma_Chr00: 15752788 .. 15754709 (-)
RNA-Seq Expression	CmaCh00G002230
Synteny	CmaCh00G002230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTATAAAGTTCTTAACTGATTTGGAAGTCGTTCCAAACATGCATCTTCCCATCACTCTTTATTGTGATAACAGTGGAGCAGTTGCAAATTTGAAAGGACCAAGAAGCCATAACCGAAGAAAACATATTGAGCGCAAATATCATCTCATAAGGAAGATTGTGCAACGAGGAGATGTGATCATCACACAGATAGCTTCGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTTAGTCTAGGACTACGAGTTATGTAATCTAGGGCAAGTGGGAGAAAAGGCAAGAGTATGTGATGATTATATAATTGTTATATAAAGCATGTTAGATGCATGTTATAGGTTATTTTCAACGTCATAAAACGAGATAGACGTTAAAATCTATAATGAAAATAAGTGCATGCTCGCTTAAGGTTAAGAATTAAGCACAATCAATTTTAATAGTTCAAATAGGTCGATGTCTTGTAAAATTTTGCTTACAAGAAAGCTCACCTGGCACGATCTTGACTAAGGCTGGAGGTACTTAAGTTGACGGTTTACGGAACACCTACTACTTAGTGGGAGATCGGACCAATACTTGAGCTTAGTTAGCCTAGTTTTATGTGCATGCTTGAGTGATGTAAGTTCTGGAAAAATTACCTAGACTTAGGTTATATTTAATTAGCCGAAATATACCTAAGTAATGAGTATACCCAACCGTTTAAAATACTTAGTGGGAGGAAAAAAGTATATGAGATACATCGTTTTCCTTTTCACGCTCTCTGAAAAATTCACACTGTGAGATTCATGCTCGGCCTCGTGTCGCCCTGGGAGCGTCTTCCATTCGGAAGGTATTTGCATGAGTCAATAACAAGGTGAATAGAGAAAGTACTTATAGTAAGTGGAAGAAGGAAGTATATAACCACGTCCTATGGTCTCCACTACTAGGTTGCACCGTGAGATTCTCATGTTCCGCCTGCATGTTGCCCTAGAGCAACTACCCATTCGGAGGGTCGTAACATGGGAGTCGAAACAACGCAAACTCCAGAAATGGATACTATTTCTTAGGGCCATTCCCAACTTTGGCTTTTTCATTCAATAGCATTGTTGGGACCGATCTATGAGGCCTGAAATTGGTGGGTCACACTTGCGAAGAATTACTAAGAGTTAGTGTTTAAGTCAAGAATGTCTTCGTTTGGTGAATGAGTGATTGACTGCCCCTCGGTAGCAGTTGCTCTAACTCACTAAAGTATCGTTGCAAATTAATAATTTTTTTTTGGTACATTATTACATTTGCTAAAACTGATTGGATTAAATAGCATTAAGTCAAATCACTAATAGAATTTTCTTTATATCTCAGCATGACAAACTCAATAGTACAATTACTCGCTTTTGAGAAATCAAACCTGAACACAATACTGGTAATTGATGATTTAAGGTTTGTTTTAACTGAGGAATGTCCTCCAAAACCCAACTCAAATGCAAACCGAACAGTTCGGGATGCGTATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGTATATCTGATGTTTTGTCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCACTCGACATGAAGCCATAAAATACATTTACAACTGTCGTATGAAAGAATGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTTAGTTTTATCATGGAGTCTCTTCCGAAGAGCTTTCCGCACAAATGTGGTGATGAACAAAATAGAATATAA

mRNA sequence

ATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTATAAAGTTCTTAACTGATTTGGAAGTCGTTCCAAACATGCATCTTCCCATCACTCTTTATTGTGATAACAGTGGAGCAGTTGCAAATTTGAAAGGACCAAGAAGCCATAACCGAAGAAAACATATTGAGCGCAAATATCATCTCATAAGGAAGATTGTGCAACGAGGAGATGTGATCATCACACAGATAGCTTCGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTTAGTCTAGGACTACGAGTTATGTTTGTTTTAACTGAGGAATGTCCTCCAAAACCCAACTCAAATGCAAACCGAACAGTTCGGGATGCGTATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGTATATCTGATGTTTTGTCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCACTCGACATGAAGCCATAAAATACATTTACAACTGTCGTATGAAAGAATGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTTAGTTTTATCATGGAGTCTCTTCCGAAGAGCTTTCCGCACAAATGTGGTGATGAACAAAATAGAATATAA

Coding sequence (CDS)

ATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTATAAAGTTCTTAACTGATTTGGAAGTCGTTCCAAACATGCATCTTCCCATCACTCTTTATTGTGATAACAGTGGAGCAGTTGCAAATTTGAAAGGACCAAGAAGCCATAACCGAAGAAAACATATTGAGCGCAAATATCATCTCATAAGGAAGATTGTGCAACGAGGAGATGTGATCATCACACAGATAGCTTCGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTTAGTCTAGGACTACGAGTTATGTTTGTTTTAACTGAGGAATGTCCTCCAAAACCCAACTCAAATGCAAACCGAACAGTTCGGGATGCGTATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGTATATCTGATGTTTTGTCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCACTCGACATGAAGCCATAAAATACATTTACAACTGTCGTATGAAAGAATGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTTAGTTTTATCATGGAGTCTCTTCCGAAGAGCTTTCCGCACAAATGTGGTGATGAACAAAATAGAATATAA

Protein sequence

MEAEYVAACEAAKESVWLIKFLTDLEVVPNMHLPITLYCDNSGAVANLKGPRSHNRRKHIERKYHLIRKIVQRGDVIITQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVMFVLTEECPPKPNSNANRTVRDAYDRWIKANDKARVYILASISDVLSKKHDVMGTAKEIMESLKGMFGQPSFSTRHEAIKYIYNCRMKEWTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMESLPKSFPHKCGDEQNRI

Homology

[Close]

BLAST of CmaCh00G002230 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-14
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 2    EAEYVAACEAAKESVWLIKFLTDLEVVPNMHLPITLYCDNSGAVANLKGPRSHNRRKHIE 61
            EAEY+A  EA +E++WL   LT + +   +  PI +Y DN G ++    P  H R KHI+
Sbjct: 1295 EAEYMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHID 1354

Query: 62   RKYHLIRKIVQRGDVIITQIASEHNIADPFTKPLTAKVFEGHLVSLGL 110
             KYH  R+ VQ   + +  I +E+ +AD FTKPL A  F      LGL
Sbjct: 1355 IKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of CmaCh00G002230 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-11
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 2    EAEYVAACEAAKESVWLIKFLTDLEVVPNMHLPITLYCDNSGAVANLKGPRSHNRRKHIE 61
            EAEY+AA E  KE +WL +FL +L +    ++   +YCD+  A+   K    H R KHI+
Sbjct: 1221 EAEYIAATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHARTKHID 1280

Query: 62   RKYHLIRKIVQRGDVIITQIASEHNIADPFTKPLTAKVFE 102
             +YH IR++V    + + +I++  N AD  TK +    FE
Sbjct: 1281 VRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

The following BLAST results are available for this feature:

BLAST of CmaCh00G002230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	1.4e-14	40.74	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	4.1e-11	37.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CmaCh00G002230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 138..244 e-value: 5.9E-14 score: 52.0
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 126..243
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 126..243
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 1..98 e-value: 2.84081E-40 score: 133.748

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002230.1	CmaCh00G002230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding