CmaCh00G001800 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L23, chloroplastic
Location	Cma_Chr00: 10668035 .. 10668475 (-)
RNA-Seq Expression	CmaCh00G001800
Synteny	CmaCh00G001800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATTAACGAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTATCCGTACCCGATGACAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGGTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCAACTAGGACAGAAATCAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATCGACTCCCGAGAAAGGCTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGACCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTGAAAGAAAATTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAG

mRNA sequence

ATGAAGAAATTAACGAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTATCCGTACCCGATGACAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGGTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCAACTAGGACAGAAATCAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATCGACTCCCGAGAAAGGCTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGACCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTGAAAGAAAATTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAG

Coding sequence (CDS)

ATGAAGAAATTAACGAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTATCCGTACCCGATGACAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGGTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCAACTAGGACAGAAATCAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATCGACTCCCGAGAAAGGCTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGACCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTGAAAGAAAATTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAG

Protein sequence

MKKLTRLLYLLSCSAGSVVQDLWSLSVPDDKNGITSYGLVENDSDLGHGLLEVEGALLGSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPLRKKRTERKLIAWRYIYTKLLPRAHAMEP

Homology

[Close]

BLAST of CmaCh00G001800 vs. ExPASy Swiss-Prot
Match: Q7FNR4 (50S ribosomal protein L23, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-30
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K+RRMGPIMGHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRT 124
           RKKRT
Sbjct: 89  RKKRT 93

[Close]

BLAST of CmaCh00G001800 vs. ExPASy Swiss-Prot
Match: Q3C1N5 (50S ribosomal protein L23, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-30
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K+RRMGPIMGHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRT 124
           RKKRT
Sbjct: 89  RKKRT 93

[Close]

BLAST of CmaCh00G001800 vs. ExPASy Swiss-Prot
Match: Q33BY9 (50S ribosomal protein L23, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-30
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K+RRMGPIMGHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRT 124
           RKKRT
Sbjct: 89  RKKRT 93

[Close]

BLAST of CmaCh00G001800 vs. ExPASy Swiss-Prot
Match: Q2MIE5 (50S ribosomal protein L23, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-30
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K+RRMGPIMGHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRT 124
           RKKRT
Sbjct: 89  RKKRT 93

[Close]

BLAST of CmaCh00G001800 vs. ExPASy Swiss-Prot
Match: Q2MI58 (50S ribosomal protein L23, chloroplastic OS=Solanum lycopersicum OX=4081 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-30
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K+RRMGPIMGHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRT 124
           RKKRT
Sbjct: 89  RKKRT 93

[Close]

BLAST of CmaCh00G001800 vs. ExPASy TrEMBL
Match: A0A1B1W700 (50S ribosomal protein L23, chloroplastic OS=Crescentia cujete OX=1125401 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.2e-39
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTE+KHWVELFFGVK+IAMNSHRLP K RRMGPIMGHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTELKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRTERK-LIAWRYIYTKLLPRAHAMEP 147
           RKKRT+ K LIAWRYIYTKLLPRAHAMEP
Sbjct: 89  RKKRTKSKYLIAWRYIYTKLLPRAHAMEP 117

[Close]

BLAST of CmaCh00G001800 vs. ExPASy TrEMBL
Match: A0A411L2K5 (50S ribosomal protein L23, chloroplastic OS=Microtea debilis OX=696524 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.5e-37
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K RRMGPIMGHTMHYRRM ITLQ GYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQSGYSIPPL 88

Query: 119 RKKRT--ERKLIAWRYIYTKLLPRAHAMEP 147
           RKKRT   + LIAWRYIYTKLLPRAHAMEP
Sbjct: 89  RKKRTYKSKYLIAWRYIYTKLLPRAHAMEP 118

[Close]

BLAST of CmaCh00G001800 vs. ExPASy TrEMBL
Match: A0A411JSV4 (Ribosomal protein L23 (Fragment) OS=Microtea debilis OX=696524 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.5e-37
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K RRMGPIMGHTMHYRRM ITLQ GYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQSGYSIPPL 88

Query: 119 RKKRT--ERKLIAWRYIYTKLLPRAHAMEP 147
           RKKRT   + LIAWRYIYTKLLPRAHAMEP
Sbjct: 89  RKKRTYKSKYLIAWRYIYTKLLPRAHAMEP 118

[Close]

BLAST of CmaCh00G001800 vs. ExPASy TrEMBL
Match: A0A3N7FZE5 (50S ribosomal protein L23, chloroplastic OS=Populus trichocarpa OX=3694 GN=POPTR_013G138612 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.9e-36
Identity = 77/89 (86.52%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K RRM PIMGHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRTERK-LIAWRYIYTKLLPRAHAMEP 147
            +K  + K LIAWRYIYTKLLPRAHAMEP
Sbjct: 89  ERKELKSKYLIAWRYIYTKLLPRAHAMEP 117

[Close]

BLAST of CmaCh00G001800 vs. ExPASy TrEMBL
Match: A0A6H0EQ50 (50S ribosomal protein L23, chloroplastic OS=Phacellaria glomerata OX=2711274 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.1e-35
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K RR+GP MGHTMHYRRM +TLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRVGPSMGHTMHYRRMILTLQPGYSIPPL 88

Query: 119 R-KKRTERKLIAWRYIYTKLLPRAHAMEP 147
           R +K  + K +AWRYIYTKLLPRAH MEP
Sbjct: 89  RERKELKSKYLAWRYIYTKLLPRAHVMEP 117

[Close]

BLAST of CmaCh00G001800 vs. NCBI nr
Match: ANW48621.1 (ribosomal protein L23 [Crescentia cujete])

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-38
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTE+KHWVELFFGVK+IAMNSHRLP K RRMGPIMGHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTELKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRTERK-LIAWRYIYTKLLPRAHAMEP 147
           RKKRT+ K LIAWRYIYTKLLPRAHAMEP
Sbjct: 89  RKKRTKSKYLIAWRYIYTKLLPRAHAMEP 117

[Close]

BLAST of CmaCh00G001800 vs. NCBI nr
Match: YP_009569894.1 (ribosomal protein L23, partial [Microtea debilis] >QBC68154.1 ribosomal protein L23, partial [Microtea debilis])

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-37
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K RRMGPIMGHTMHYRRM ITLQ GYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQSGYSIPPL 88

Query: 119 RKKRT--ERKLIAWRYIYTKLLPRAHAMEP 147
           RKKRT   + LIAWRYIYTKLLPRAHAMEP
Sbjct: 89  RKKRTYKSKYLIAWRYIYTKLLPRAHAMEP 118

[Close]

BLAST of CmaCh00G001800 vs. NCBI nr
Match: QBE86522.1 (ribosomal protein L23 [Microtea debilis] >QBE86544.1 ribosomal protein L23 [Microtea debilis])

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-37
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K RRMGPIMGHTMHYRRM ITLQ GYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQSGYSIPPL 88

Query: 119 RKKRT--ERKLIAWRYIYTKLLPRAHAMEP 147
           RKKRT   + LIAWRYIYTKLLPRAHAMEP
Sbjct: 89  RKKRTYKSKYLIAWRYIYTKLLPRAHAMEP 118

[Close]

BLAST of CmaCh00G001800 vs. NCBI nr
Match: RQO99415.1 (hypothetical protein POPTR_013G138612 [Populus trichocarpa])

HSP 1 Score: 160.6 bits (405), Expect = 1.0e-35
Identity = 77/89 (86.52%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K RRM PIMGHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRTERK-LIAWRYIYTKLLPRAHAMEP 147
            +K  + K LIAWRYIYTKLLPRAHAMEP
Sbjct: 89  ERKELKSKYLIAWRYIYTKLLPRAHAMEP 117

[Close]

BLAST of CmaCh00G001800 vs. NCBI nr
Match: YP_009515137.1 (ribosomal protein L23 [Dendrotrophe varians] >YP_009515147.1 ribosomal protein L23 [Dendrotrophe varians] >YP_009772497.1 ribosomal protein L23 [Phacellaria compressa] >YP_009772507.1 ribosomal protein L23 [Phacellaria compressa] >YP_009772569.1 ribosomal protein L23 [Phacellaria glomerata] >YP_009772579.1 ribosomal protein L23 [Phacellaria glomerata] >AUN45198.1 ribosomal protein L23 [Dendrotrophe varians] >AUN45199.1 ribosomal protein L23 [Dendrotrophe varians] >QIT03587.1 ribosomal protein L23 [Phacellaria compressa] >QIT03597.1 ribosomal protein L23 [Phacellaria compressa] >QIT03659.1 ribosomal protein L23 [Phacellaria glomerata])

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-34
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K RR+GP MGHTMHYRRM +TLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRVGPSMGHTMHYRRMILTLQPGYSIPPL 88

Query: 119 R-KKRTERKLIAWRYIYTKLLPRAHAMEP 147
           R +K  + K +AWRYIYTKLLPRAH MEP
Sbjct: 89  RERKELKSKYLAWRYIYTKLLPRAHVMEP 117

[Close]

BLAST of CmaCh00G001800 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-30
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K +RMGPI+GHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRT 124
           RKKRT
Sbjct: 89  RKKRT 93

[Close]

BLAST of CmaCh00G001800 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-30
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 59  GSTRTEIKHWVELFFGVKIIAMNSHRLPRKARRMGPIMGHTMHYRRMTITLQPGYSIPPL 118
           GSTRTEIKHWVELFFGVK+IAMNSHRLP K +RMGPI+GHTMHYRRM ITLQPGYSIPPL
Sbjct: 29  GSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPGYSIPPL 88

Query: 119 RKKRT 124
           RKKRT
Sbjct: 89  RKKRT 93

[Close]

BLAST of CmaCh00G001800 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1    MKKLTRLLYLLSCSAGSVVQDLWSLSVPDDKNGITSYGLVENDSDLGHGLLEVEGALLGS 60
            MKK T LLYLLSCSAGSV QDLWSL VPD+KN ITSYG VENDSDL HGLLEV+GAL+GS
Sbjct: 1956 MKKFTILLYLLSCSAGSVAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGALVGS 2015

Query: 61   TRTE 65
            +RTE
Sbjct: 2016 SRTE 2019

[Close]

BLAST of CmaCh00G001800 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1    MKKLTRLLYLLSCSAGSVVQDLWSLSVPDDKNGITSYGLVENDSDLGHGLLEVEGALLGS 60
            MKK T LLYLLSCSAGSV QDLWSL VPD+KN ITSYG VENDSDL HGLLEV+GAL+GS
Sbjct: 1956 MKKFTILLYLLSCSAGSVAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGALVGS 2015

Query: 61   TRTE 65
            +RTE
Sbjct: 2016 SRTE 2019

The following BLAST results are available for this feature:

BLAST of CmaCh00G001800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7FNR4	5.1e-30	93.85	50S ribosomal protein L23, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl23-...	[more]
Q3C1N5	5.1e-30	93.85	50S ribosomal protein L23, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl2...	[more]
Q33BY9	5.1e-30	93.85	50S ribosomal protein L23, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN...	[more]
Q2MIE5	5.1e-30	93.85	50S ribosomal protein L23, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=r...	[more]
Q2MI58	5.1e-30	93.85	50S ribosomal protein L23, chloroplastic OS=Solanum lycopersicum OX=4081 GN=rpl2...	[more]

BLAST of CmaCh00G001800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1B1W700	6.2e-39	91.01	50S ribosomal protein L23, chloroplastic OS=Crescentia cujete OX=1125401 GN=rpl2...	[more]
A0A411L2K5	1.5e-37	88.89	50S ribosomal protein L23, chloroplastic OS=Microtea debilis OX=696524 GN=rpl23 ...	[more]
A0A411JSV4	1.5e-37	88.89	Ribosomal protein L23 (Fragment) OS=Microtea debilis OX=696524 GN=rpl23 PE=3 SV=...	[more]
A0A3N7FZE5	4.9e-36	86.52	50S ribosomal protein L23, chloroplastic OS=Populus trichocarpa OX=3694 GN=POPTR...	[more]
A0A6H0EQ50	7.1e-35	82.02	50S ribosomal protein L23, chloroplastic OS=Phacellaria glomerata OX=2711274 GN=...	[more]

BLAST of CmaCh00G001800 vs. NCBI nr


Match Name	E-value	Identity	Description
ANW48621.1	1.3e-38	91.01	ribosomal protein L23 [Crescentia cujete]	[more]
YP_009569894.1	3.2e-37	88.89	ribosomal protein L23, partial [Microtea debilis] >QBC68154.1 ribosomal protein ...	[more]
QBE86522.1	3.2e-37	88.89	ribosomal protein L23 [Microtea debilis] >QBE86544.1 ribosomal protein L23 [Micr...	[more]
RQO99415.1	1.0e-35	86.52	hypothetical protein POPTR_013G138612 [Populus trichocarpa]	[more]
YP_009515137.1	1.5e-34	82.02	ribosomal protein L23 [Dendrotrophe varians] >YP_009515147.1 ribosomal protein L...	[more]

BLAST of CmaCh00G001800 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00840.1	2.3e-30	90.77	ribosomal protein L23.1	[more]
ATCG01300.1	2.3e-30	90.77	ribosomal protein L23	[more]
ATCG00860.1	5.6e-24	82.81	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	5.6e-24	82.81	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 57..135 e-value: 8.1E-10 score: 40.8
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 60..115 e-value: 3.1E-10 score: 40.3
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..64
None	No IPR available	PANTHER	PTHR33078:SF64	PROTEIN YCF2	coord: 1..64
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 103..118
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 59..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001800.1	CmaCh00G001800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome