CmaCh00G001780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	30S ribosomal protein S19, chloroplastic
Location	Cma_Chr00: 10665303 .. 10666409 (-)
RNA-Seq Expression	CmaCh00G001780
Synteny	CmaCh00G001780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGGCATACTCTTTCTATTCATAATGTAAGGGACCATTTGCCTATTTATATAATGGATCACATGGTAGGTCATAAATTGGGAGAAGTTTATGTGTCAACGAATCACACGTACAGATATTGATAATACACATAGAGTTAATGGTATTTCATAACTAATTGATTGAGCAGCAGCTCGTAGACCACCTAAAAAGGAATATTGATTATTGGATCCATATCCTGACATAAGAAGTCCGATGGGAGCAAGACTTGAAATGGCAATCCATAAAAAAACACCTATATGCAGATCTGCTAAAACAAGGCGATAACCAAAAGGAATTACTGAATAGCTTAGTCAAATGGATATGACTGCTATGGATGGATGGTTCGATACTGAATAAAGGCGTATCACCTCTAGATGGAAGCTGATTTTCTTTAAAAAGTCGTTTTGTACCATCTGCTAAAGCTTGAAGAACTCGCAAAGGACCAGCATATTCAGGTACAATCCGTTGTTGTATGCGTATATTTCTCTTTCTAACCATACAATTACTAGTACGCCGATTTTGATTCCCAATACAGTAGTCAAAATAGGGACAAACACCCATAGAATTCCATAGACTGATTTGAAGAATTCCAATCTCGATGTCCTTCTCCCCGATCAGATTCAGTATCCTTGGTTTCAAAAGGGATTGGATAAGGCTCACATTACTGCCACTTCACCGGAAGATCAAGGCCATGTCGAAAAATACCAGAGGCACTTCCTCTTAGCCATTCACTAGAGTTCTTTCTTTAAAAAGAAAGGGAGGGGGGGTAGAGCAAGATTCGCGCATCCAGTTGTCCGGTCAAAAAGAAGAAGGGTCGTGCCCAGTCCCAAACTGTTCTTACGTTCTGCCTTTCGGGAATCAGATGATGAGAGGACTAAGGCTAGATGATCGTGTCATTCTCTATACACCTGAAAAACCGTCGTATTCGAGATCTTTCTTTTTGCCATCGTCCAGTGGAAAGTAGAATGAACCCAGGTTTGAAAAACTGATGTTGCAGGACTTCAACAGGAGATCGAACAAGGCTGATTTCGGCAGCTGAGGATCGCTTTGTGCCTGACTCCACTCACTACCTTTTAGCGTGA

mRNA sequence

ATGATTGGGCATACTCTTTCTATTCATAATGTAAGGGACCATTTGCCTATTTATATAATGGATCACATGGTAGGTCATAAATTGGGAGAAGTTTATGTGTCAACGAATCACACAAAGGGAGGGGGGGTAGAGCAAGATTCGCGCATCCAGTTGTCCGGTCAAAAAGAAGAAGGGTCGTGCCCAGTCCCAAACTGTTCTTACGTTCTGCCTTTCGGGAATCAGATGATGAGAGGACTAAGGCTAGATGATCGTGTCATTCTCTATACACCTGAAAAACCGTCGTATTCGAGATCTTTCTTTTTGCCATCGTCCAGTGGAAAGACTTCAACAGGAGATCGAACAAGGCTGATTTCGGCAGCTGAGGATCGCTTTGTGCCTGACTCCACTCACTACCTTTTAGCGTGA

Coding sequence (CDS)

ATGATTGGGCATACTCTTTCTATTCATAATGTAAGGGACCATTTGCCTATTTATATAATGGATCACATGGTAGGTCATAAATTGGGAGAAGTTTATGTGTCAACGAATCACACAAAGGGAGGGGGGGTAGAGCAAGATTCGCGCATCCAGTTGTCCGGTCAAAAAGAAGAAGGGTCGTGCCCAGTCCCAAACTGTTCTTACGTTCTGCCTTTCGGGAATCAGATGATGAGAGGACTAAGGCTAGATGATCGTGTCATTCTCTATACACCTGAAAAACCGTCGTATTCGAGATCTTTCTTTTTGCCATCGTCCAGTGGAAAGACTTCAACAGGAGATCGAACAAGGCTGATTTCGGCAGCTGAGGATCGCTTTGTGCCTGACTCCACTCACTACCTTTTAGCGTGA

Protein sequence

MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKGGGVEQDSRIQLSGQKEEGSCPVPNCSYVLPFGNQMMRGLRLDDRVILYTPEKPSYSRSFFLPSSSGKTSTGDRTRLISAAEDRFVPDSTHYLLA

Homology

[Close]

BLAST of CmaCh00G001780 vs. ExPASy Swiss-Prot
Match: A7M936 (30S ribosomal protein S19, plastid OS=Cuscuta gronovii OX=35886 GN=rps19 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTN---HTKG 41
          MIGHT++IHN ++HLPIYIMD MVGHKLGE   + N   H KG
Sbjct: 44 MIGHTIAIHNGKEHLPIYIMDDMVGHKLGEFAATLNFRGHEKG 86

[Close]

BLAST of CmaCh00G001780 vs. ExPASy Swiss-Prot
Match: A8W3M2 (30S ribosomal protein S19, plastid OS=Cuscuta obtusiflora OX=437280 GN=rps19 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTN---HTKG 41
          MIGHT++IHN ++HLPIYIMD MVGHKLGE   + N   H KG
Sbjct: 44 MIGHTIAIHNGKEHLPIYIMDDMVGHKLGEFAATLNFRGHEKG 86

[Close]

BLAST of CmaCh00G001780 vs. ExPASy Swiss-Prot
Match: A7Y3J1 (30S ribosomal protein S19, chloroplastic OS=Ipomoea purpurea OX=4121 GN=rps19 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKG 41
          MIGHT++IHN ++HLPIYI DHMVGHKLGE + ST + +G
Sbjct: 44 MIGHTIAIHNGKEHLPIYITDHMVGHKLGE-FASTFNFRG 82

[Close]

BLAST of CmaCh00G001780 vs. ExPASy Swiss-Prot
Match: A8W3G1 (30S ribosomal protein S19, plastid OS=Cuscuta exaltata OX=476139 GN=rps19 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-08
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKG 41
          M+GHT++IH  ++HLPIYIMDHMVGHKLGE + ST + +G
Sbjct: 44 MVGHTIAIHTGKEHLPIYIMDHMVGHKLGE-FASTFNFRG 82

[Close]

BLAST of CmaCh00G001780 vs. ExPASy Swiss-Prot
Match: A7M9A3 (30S ribosomal protein S19, plastid OS=Cuscuta reflexa OX=4129 GN=rps19 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-08
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKGGGVEQDSR 49
          M+GHT++IH  ++HLPIYIMDHMVGHKLGE   + N    G  + D+R
Sbjct: 44 MVGHTIAIHTGKEHLPIYIMDHMVGHKLGEFAFTLNFR--GHAKTDNR 89

[Close]

BLAST of CmaCh00G001780 vs. ExPASy TrEMBL
Match: A0A6M4SRW5 (30S ribosomal protein S19, chloroplastic OS=Indofevillea khasiana OX=383665 GN=rps19 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKGGGVEQDSR 49
          MIGHT++IHN +DHLPIYI DHMVGHKLGE   + N    G V+ D+R
Sbjct: 44 MIGHTIAIHNGKDHLPIYITDHMVGHKLGEFSPTRNFR--GHVKNDNR 89

[Close]

BLAST of CmaCh00G001780 vs. ExPASy TrEMBL
Match: A0A7H0DH30 (Ribosomal protein S19 OS=Cuscuta pedicellata OX=192827 GN=rps19 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKGGGVEQDSR 49
          MIGHT++IHN ++HLPIYIMDHMVGHKLGE   + N    G  + D+R
Sbjct: 44 MIGHTIAIHNGKEHLPIYIMDHMVGHKLGEFATTLNFR--GHAKNDNR 89

[Close]

BLAST of CmaCh00G001780 vs. ExPASy TrEMBL
Match: A0A7L9D5R1 (Ribosomal protein S19 OS=Primula forrestii OX=175068 GN=rps19 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTN---HTKG 41
          MIGHT++IHN ++HLPIYI DHMVGHKLGE   + N   HTKG
Sbjct: 44 MIGHTIAIHNGKEHLPIYITDHMVGHKLGEFSPTLNFRGHTKG 86

[Close]

BLAST of CmaCh00G001780 vs. ExPASy TrEMBL
Match: U3R6K2 (30S ribosomal protein S19, chloroplastic OS=Ipomoea splendor-sylvae OX=1393931 GN=rps19 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTN---HTKG 41
          MIGHT++IHN ++HLPIYI DHMVGHKLGE   + N   HTKG
Sbjct: 44 MIGHTIAIHNGKEHLPIYITDHMVGHKLGEFASTFNFRGHTKG 86

[Close]

BLAST of CmaCh00G001780 vs. ExPASy TrEMBL
Match: U3R7L1 (30S ribosomal protein S19, chloroplastic OS=Ipomoea cordatotriloba OX=35882 GN=rps19 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTN---HTKG 41
          MIGHT++IHN ++HLPIYI DHMVGHKLGE   + N   HTKG
Sbjct: 44 MIGHTIAIHNGKEHLPIYITDHMVGHKLGEFASTFNFRGHTKG 86

[Close]

BLAST of CmaCh00G001780 vs. NCBI nr
Match: YP_010019603.1 (ribosomal protein S19 [Primula forrestii] >QOJ49304.1 ribosomal protein S19 [Primula forrestii])

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTN---HTKG 41
          MIGHT++IHN ++HLPIYI DHMVGHKLGE   + N   HTKG
Sbjct: 44 MIGHTIAIHNGKEHLPIYITDHMVGHKLGEFSPTLNFRGHTKG 86

[Close]

BLAST of CmaCh00G001780 vs. NCBI nr
Match: QJS52367.1 (ribosomal protein S19 [Indofevillea khasiana])

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-06
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKGGGVEQDSR 49
          MIGHT++IHN +DHLPIYI DHMVGHKLGE   + N    G V+ D+R
Sbjct: 44 MIGHTIAIHNGKDHLPIYITDHMVGHKLGEFSPTRNFR--GHVKNDNR 89

[Close]

BLAST of CmaCh00G001780 vs. NCBI nr
Match: YP_009994478.1 (ribosomal protein S19 [Cuscuta pedicellata] >QNP08640.1 ribosomal protein S19 [Cuscuta pedicellata])

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-06
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKGGGVEQDSR 49
          MIGHT++IHN ++HLPIYIMDHMVGHKLGE   + N    G  + D+R
Sbjct: 44 MIGHTIAIHNGKEHLPIYIMDHMVGHKLGEFATTLNFR--GHAKNDNR 89

[Close]

BLAST of CmaCh00G001780 vs. NCBI nr
Match: QJS33451.1 (ribosomal protein S19 [Wenchengia alternifolia])

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-06
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKGGGVEQDSRIQL 52
          MIGHT+++HN R+HLPIYI DHMVGHKLGE   + N    G  + D+R +L
Sbjct: 44 MIGHTIAVHNGREHLPIYITDHMVGHKLGEFVPTLNFQ--GHAKSDNRSRL 92

[Close]

BLAST of CmaCh00G001780 vs. NCBI nr
Match: YP_009128431.1 (ribosomal protein S19 [Ipomoea batatas] >YP_009364710.1 ribosomal protein S19 [Ipomoea trifida] >YP_009491680.1 ribosomal protein S19 [Ipomoea lacunosa] >YP_009491765.1 ribosomal protein S19 [Ipomoea triloba] >YP_009567044.1 ribosomal protein S19 [Ipomoea cynanchifolia] >YP_009567130.1 ribosomal protein S19 [Ipomoea cordatotriloba] >YP_009567216.1 ribosomal protein S19 [Ipomoea ramosissima] >YP_009567302.1 ribosomal protein S19 [Ipomoea splendor-sylvae] >YP_009567388.1 ribosomal protein S19 [Ipomoea tabascana] >YP_009567474.1 ribosomal protein S19 [Ipomoea x leucantha] >AGW96377.1 ribosomal protein S19 [Ipomoea batatas] >AGW96460.1 ribosomal protein S19 [Ipomoea batatas] >AGW96547.1 ribosomal protein S19 [Ipomoea batatas] >AGW96631.1 ribosomal protein S19 [Ipomoea trifida] >AGW98074.1 ribosomal protein S19 [Ipomoea splendor-sylvae])

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTN---HTKG 41
          MIGHT++IHN ++HLPIYI DHMVGHKLGE   + N   HTKG
Sbjct: 44 MIGHTIAIHNGKEHLPIYITDHMVGHKLGEFASTFNFRGHTKG 86

[Close]

BLAST of CmaCh00G001780 vs. TAIR 10
Match: ATCG00820.1 (ribosomal protein S19 )

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 1  MIGHTLSIHNVRDHLPIYIMDHMVGHKLGEVYVSTNHTKGGGVEQDSR 49
          MIGHT++IHN R+HLP+YI+D MVGHKLGE   + N    G  + D+R
Sbjct: 44 MIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFR--GHAKNDNR 89

The following BLAST results are available for this feature:

BLAST of CmaCh00G001780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7M936	2.9e-08	65.12	30S ribosomal protein S19, plastid OS=Cuscuta gronovii OX=35886 GN=rps19 PE=3 SV...	[more]
A8W3M2	2.9e-08	65.12	30S ribosomal protein S19, plastid OS=Cuscuta obtusiflora OX=437280 GN=rps19 PE=...	[more]
A7Y3J1	2.9e-08	67.50	30S ribosomal protein S19, chloroplastic OS=Ipomoea purpurea OX=4121 GN=rps19 PE...	[more]
A8W3G1	3.8e-08	65.00	30S ribosomal protein S19, plastid OS=Cuscuta exaltata OX=476139 GN=rps19 PE=3 S...	[more]
A7M9A3	5.0e-08	56.25	30S ribosomal protein S19, plastid OS=Cuscuta reflexa OX=4129 GN=rps19 PE=3 SV=1	[more]

BLAST of CmaCh00G001780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M4SRW5	1.7e-06	62.50	30S ribosomal protein S19, chloroplastic OS=Indofevillea khasiana OX=383665 GN=r...	[more]
A0A7H0DH30	1.7e-06	60.42	Ribosomal protein S19 OS=Cuscuta pedicellata OX=192827 GN=rps19 PE=3 SV=1	[more]
A0A7L9D5R1	1.7e-06	67.44	Ribosomal protein S19 OS=Primula forrestii OX=175068 GN=rps19 PE=3 SV=1	[more]
U3R6K2	2.2e-06	67.44	30S ribosomal protein S19, chloroplastic OS=Ipomoea splendor-sylvae OX=1393931 G...	[more]
U3R7L1	2.2e-06	67.44	30S ribosomal protein S19, chloroplastic OS=Ipomoea cordatotriloba OX=35882 GN=r...	[more]

BLAST of CmaCh00G001780 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010019603.1	3.5e-06	67.44	ribosomal protein S19 [Primula forrestii] >QOJ49304.1 ribosomal protein S19 [Pri...	[more]
QJS52367.1	3.5e-06	62.50	ribosomal protein S19 [Indofevillea khasiana]	[more]
YP_009994478.1	3.5e-06	60.42	ribosomal protein S19 [Cuscuta pedicellata] >QNP08640.1 ribosomal protein S19 [C...	[more]
QJS33451.1	4.5e-06	56.86	ribosomal protein S19 [Wenchengia alternifolia]	[more]
YP_009128431.1	4.5e-06	67.44	ribosomal protein S19 [Ipomoea batatas] >YP_009364710.1 ribosomal protein S19 [I...	[more]

BLAST of CmaCh00G001780 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00820.1	1.8e-08	56.25	ribosomal protein S19	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023575	Ribosomal protein S19/S15, superfamily	GENE3D	3.30.860.10	30s Ribosomal Protein S19; Chain A	coord: 1..49 e-value: 1.1E-8 score: 36.7
IPR023575	Ribosomal protein S19/S15, superfamily	SUPERFAMILY	54570	Ribosomal protein S19	coord: 1..35
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 1..35 e-value: 1.1E-8 score: 34.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001780.1	CmaCh00G001780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome