CmaCh00G001670 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH dehydrogenase subunit 7
Location	Cma_Chr00: 10533101 .. 10533483 (+)
RNA-Seq Expression	CmaCh00G001670
Synteny	CmaCh00G001670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTTCTAGGCGGGGCGGGCCACCTACCTTCGAATGGTCTTGGTCCTACGGACCGTGAACGGATTCACCTCTGGCCTCTGGGTACGTCGGAACCGCATAAGTTCACCGGGGTGAAGCACGGTCCGCCAAAATCGGCATAGGTTAGGTGCTATTGATGGAACATGGTAAGCCTATCTTTCTCCATATGGAAGTGTTGCGGGCACATAGAGATGTGGGTAGAGTCAGCCTCAAAAAGCAAAGGCCGTGCTGTAGGTCACGTGACCTGCACCGAGTTGGTGGCTTACTGGGCTTTTTCCTAGATCAAAGCGGATCAGCTCGCCTTCTTGTTATCCAAAAGTCGGTCGAATCGGGCGGGCCCCCGCCCCGGAACGTCGAATGA

mRNA sequence

ATGACTGTTCTAGGCGGGGCGGGCCACCTACCTTCGAATGGTCTTGGTCCTACGGACCGTGAACGGATTCACCTCTGGCCTCTGGGTACGTCGGAACCGCATAAGTTCACCGGGGTGAAGCACGTGTTGCGGGCACATAGAGATGTGGGTAGAGTCAGCCTCAAAAAGCAAAGGCCGTGCTGTAGGTCACGTGACCTGCACCGAGTTGGTGGCTTACTGGGCTTTTTCCTAGATCAAAGCGGATCAGCTCGCCTTCTTGTTATCCAAAAGTCGGTCGAATCGGGCGGGCCCCCGCCCCGGAACGTCGAATGA

Coding sequence (CDS)

ATGACTGTTCTAGGCGGGGCGGGCCACCTACCTTCGAATGGTCTTGGTCCTACGGACCGTGAACGGATTCACCTCTGGCCTCTGGGTACGTCGGAACCGCATAAGTTCACCGGGGTGAAGCACGTGTTGCGGGCACATAGAGATGTGGGTAGAGTCAGCCTCAAAAAGCAAAGGCCGTGCTGTAGGTCACGTGACCTGCACCGAGTTGGTGGCTTACTGGGCTTTTTCCTAGATCAAAGCGGATCAGCTCGCCTTCTTGTTATCCAAAAGTCGGTCGAATCGGGCGGGCCCCCGCCCCGGAACGTCGAATGA

Protein sequence

MTVLGGAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKHVLRAHRDVGRVSLKKQRPCCRSRDLHRVGGLLGFFLDQSGSARLLVIQKSVESGGPPPRNVE

Homology

[Close]

BLAST of CmaCh00G001670 vs. ExPASy TrEMBL
Match: A0A5D3C3P7 (NADH dehydrogenase subunit 7 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84067G00020 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.6e-11
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 5   GGAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKH 42
           GGAGH P NGLGPTDRERI LWPLGTS PHKFTGV+H
Sbjct: 170 GGAGHPPENGLGPTDRERIRLWPLGTSPPHKFTGVEH 206

[Close]

BLAST of CmaCh00G001670 vs. ExPASy TrEMBL
Match: A0A6A5L872 (Complex1_49kDa domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00002471 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 6   GAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKH 42
           GAGH PSNG+GPTDRERI LWPLGTSEPH+FTGV+H
Sbjct: 153 GAGHPPSNGVGPTDRERIRLWPLGTSEPHEFTGVEH 188

[Close]

BLAST of CmaCh00G001670 vs. ExPASy TrEMBL
Match: A0A6A5NZ26 (Complex1_49kDa domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00025529 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 6   GAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKH 42
           GAGH PSNG+GPTD ERI LWPLGTSEPH+FT V+H
Sbjct: 153 GAGHPPSNGVGPTDHERIRLWPLGTSEPHEFTRVEH 188

[Close]

BLAST of CmaCh00G001670 vs. ExPASy TrEMBL
Match: A0A2K3N589 (NADH dehydrogenase subunit 7 OS=Trifolium pratense OX=57577 GN=L195_g021406 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.9e-08
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 6   GAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKH 42
           GAGH P  G+GPTDRE I LWP GTSEPH+FTGV+H
Sbjct: 99  GAGHPPEEGVGPTDREWIRLWPRGTSEPHEFTGVEH 134

[Close]

BLAST of CmaCh00G001670 vs. ExPASy TrEMBL
Match: A0A2Z6LN36 (Complex1_49kDa domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_198960 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 6   GAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTG 39
           GAGH PSNG+GPTDRE I LWP GTSEPH+FTG
Sbjct: 146 GAGHPPSNGVGPTDREWIRLWPRGTSEPHEFTG 178

[Close]

BLAST of CmaCh00G001670 vs. NCBI nr
Match: KAE8647106.1 (hypothetical protein Csa_021707 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MTVLGGAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKHVLRAHRDVGRVSLKKQRPC 60
          MTVLGGAGH P NGLGPTDRERI LWPLGTS PHKFTGV+HVLRAHRDVGR SLKK+RP 
Sbjct: 1  MTVLGGAGHPPENGLGPTDRERIRLWPLGTSPPHKFTGVEHVLRAHRDVGRGSLKKRRPS 60

Query: 61 CRSRDLHRVGG 72
          CRSRDLHRVGG
Sbjct: 61 CRSRDLHRVGG 71

[Close]

BLAST of CmaCh00G001670 vs. NCBI nr
Match: KAE8647133.1 (hypothetical protein Csa_021544 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 8.5e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MTVLGGAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKH 42
          MTVLGGAGH P NGLGPTDRERI LWPLGTS PHKFTGV+H
Sbjct: 1  MTVLGGAGHPPENGLGPTDRERIRLWPLGTSPPHKFTGVEH 41

[Close]

BLAST of CmaCh00G001670 vs. NCBI nr
Match: KAG4936239.1 (hypothetical protein JHK85_051158 [Glycine max] >KAG4950652.1 hypothetical protein JHK86_043891 [Glycine max] >KAG5058968.1 hypothetical protein JHK86_013964 [Glycine max] >KAG5070477.1 hypothetical protein JHK85_002854 [Glycine max] >KAG5076087.1 hypothetical protein JHK82_057409 [Glycine max])

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1  MTVLGGAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKH 42
          MTVLGGAGH PSNG+GPTDRE I LWPLGTSEPH+FTGV+H
Sbjct: 1  MTVLGGAGHPPSNGVGPTDREWIRLWPLGTSEPHEFTGVEH 41

[Close]

BLAST of CmaCh00G001670 vs. NCBI nr
Match: CAB3504614.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 80.9 bits (198), Expect = 7.2e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 3  VLGGAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKH 42
          +LGGAGH PSNG+GPTDRERI LWPLGTSEPH+FTGV+H
Sbjct: 33 ILGGAGHQPSNGVGPTDRERIRLWPLGTSEPHEFTGVEH 71

[Close]

BLAST of CmaCh00G001670 vs. NCBI nr
Match: CAB3504701.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 80.9 bits (198), Expect = 7.2e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 3  VLGGAGHLPSNGLGPTDRERIHLWPLGTSEPHKFTGVKH 42
          +LGGAGH PSNG+GPTDRERI LWPLGTSEPH+FTGV+H
Sbjct: 33 ILGGAGHQPSNGVGPTDRERIRLWPLGTSEPHEFTGVEH 71

The following BLAST results are available for this feature:

BLAST of CmaCh00G001670 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh00G001670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3P7	8.6e-11	86.49	NADH dehydrogenase subunit 7 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6A5L872	1.5e-10	86.11	Complex1_49kDa domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_0000247...	[more]
A0A6A5NZ26	4.7e-09	80.56	Complex1_49kDa domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_0002552...	[more]
A0A2K3N589	8.9e-08	75.00	NADH dehydrogenase subunit 7 OS=Trifolium pratense OX=57577 GN=L195_g021406 PE=3...	[more]
A0A2Z6LN36	2.0e-07	81.82	Complex1_49kDa domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TS...	[more]

BLAST of CmaCh00G001670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647106.1	2.2e-29	88.73	hypothetical protein Csa_021707 [Cucumis sativus]	[more]
KAE8647133.1	8.5e-13	87.80	hypothetical protein Csa_021544 [Cucumis sativus]	[more]
KAG4936239.1	3.2e-12	85.37	hypothetical protein JHK85_051158 [Glycine max] >KAG4950652.1 hypothetical prote...	[more]
CAB3504614.1	7.2e-12	84.62	unnamed protein product [Digitaria exilis]	[more]
CAB3504701.1	7.2e-12	84.62	unnamed protein product [Digitaria exilis]	[more]

BLAST of CmaCh00G001670 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001670.1	CmaCh00G001670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0048038	quinone binding