CmaCh00G001620 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G001620
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
LocationCma_Chr00: 10518777 .. 10521369 (-)
RNA-Seq ExpressionCmaCh00G001620
SyntenyCmaCh00G001620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATACCTTTCATCTCACTTTCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTCTTTTTCCGACCTCACCAAAACCCTTCGACGTATGTACTCTTTTCCGAGTATTTGATTGTCTAGTATAGTTATGATTTTTTCAGTTTATCTATCTATCTATTGATCAAATAAATAGTAGTTATATCTATCCATATGTATGGTCTTGGACTATCAATAATGCTTTTTCTTTAGAGTTGGTGATATGAACCACGACCAAGGAATTTCCATACCTGATAGTCCAATTACAAGGACGAGAGCTAAGAAGCTACAACAAATCTTATACAGTTATATTCAAGCTATGGTGAGCTCATTAAAGAAAATTCTAGAAGACGCTGGAGACCTCCCTTATATGTTGTGCAAAGTTGAGCTTCAAGAAAAAGATGAATTAAATGCACTTTAAGTTGCATTTAATGAACTCCACTGAATTTATGAAACTAGTCCAAGGATGAGTCAATAAGCACATTTTATTAATTGCATTATTTTATTATAGTTTAAATATTTGTTTGTCATATTTAAGCTAGTTTTAAATATAGGAGTTAAGGTTATATTGTAACCCACATAGGTTACTATATTCCACCATTAACTAGCCATTTTAATATGGAGGTTATGAGTATTTTTCATTTACTAGCCCATTTAATTTGGGAGTTATATATCCATAGGTTAAGGTTGTAAGGGCTATATAAAGCCTTCTTTTCTTTGATTAGACATCAGATTTTGGAATTAAGAATAGAATTTCTATTTTAGCTTTGTTGAGAGCTAAACTTTCTTTGCAAATTCTTGTGTTTAGAACTTGCATGTAGGACTCAAGTGGTATTGATCAAACCTCTTGTGGAGTGATTCGAATCACGAGTTTAGAAACGAGTTTTCTTTTCAAGTGGTATTGATCAAACCTCTTGTGGAGTGATTCGAATCACGAGTTTAGAAACGAGTTTTCTTTACTCTTGATCTTGATCATCAAGGTAATCCGTTCCATACTTTCCCTTGGGTTGGTTTTCCATATCAGTTGGGCTACTTTACTTGATCGATCCACTTACTTGTATTATGTCAATATTAATCACGATGGAATTATGGTTCTTATTTATAGTGACAATTATATGTCTCACGATCAAGGATATTTGAGAGCGTATATGAGTTTGTTCAATACGTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATCCAAATTTCTCTTTTTTGAGAATTGGTTGGAATGTGGTCTTATCTATTAATAGGGTTTTGGTTCACTCCACCTACTGCTGCCGTAAATGCTTGTCAAAAGGTATTTGTAACTAATTGCGTGGGGGATTTGGGCTTATTTCTTATTAGGGATTTTAGGTCTTTATTGGACAACAGAGAGTTTTGCATTTCGGGATTGATTTCTAATAATGAGGTGAATTTCTTATTTGTTACTTTGTGCGCCGTCCTTCCTATTATTTGCAGGTGCAGTTGCTAAATCCGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCGATTTCGGCTCTTATACATGCTGCTACAATGGTAGGGGAAGTTTTCTTATTGCTCGGCTTCTTCCGCTTTTTATAGTAATACCTTACATCATGAATCTAATAGCTAGGGATAATAACAGTACTATATTGGAGCTACTTTAGCTCTTGCTCAAAAAGAGATTAAGAGAAGTTTCAGCCTATTCTACAATGTCTCAATTGGGTTATACGTATGATGTTAGCTGCTTTGGGTATAGGGTCTTATCGACCTGCTCTTTATTTCATTGGATTACTCATGCTTATTCTAAAGCTTTGTTGTTTTTAGGATCTTGGTCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGGGGTTTAACATGTGCCAATTACAAAAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCCACAGCAGGATTAACAGCATTTTATATGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGTGCCAATTACAAAAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCATGTTCCACAGCAGGATTAACAGCATTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTCAAACAGTGGAAAAACAAATAA

mRNA sequence

ATGGATCATACCTTTCATCTCACTTTCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTCTTTTTCCGACCTCACCAAAACCCTTCGACGTATGTACTCTTTTCCGAGGTTTTGGTTCACTCCACCTACTGCTGCCGTAAATGCTTGTCAAAAGGTGCAGTTGCTAAATCCGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCGATTTCGGCTCTTATACATGCTGCTACAATGGATCTTGGTCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGGGGTTTAACATGTGCCAATTACAAAAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCATGTTCCACAGCAGGATTAACAGCATTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTCAAACAGTGGAAAAACAAATAA

Coding sequence (CDS)

ATGGATCATACCTTTCATCTCACTTTCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTCTTTTTCCGACCTCACCAAAACCCTTCGACGTATGTACTCTTTTCCGAGGTTTTGGTTCACTCCACCTACTGCTGCCGTAAATGCTTGTCAAAAGGTGCAGTTGCTAAATCCGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCGATTTCGGCTCTTATACATGCTGCTACAATGGATCTTGGTCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGGGGTTTAACATGTGCCAATTACAAAAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCATGTTCCACAGCAGGATTAACAGCATTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTCAAACAGTGGAAAAACAAATAA

Protein sequence

MDHTFHLTFNSYLNRSGTSTFFFRPHQNPSTYVLFSEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMDLGPFIIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHLNIFKQWKNK
Homology
[Close]
BLAST of CmaCh00G001620 vs. ExPASy Swiss-Prot
Match: Q9TL56 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Carpenteria californica OX=23101 GN=ndhF PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-47
Identity = 128/293 (43.69%), Postives = 141/293 (48.12%), Query Frame = 0 

Query: 18  TSTFFFRP-HQNPSTYVLFSEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR   Q  +  +  +EV +     C   L  GAVAKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFQIVTNLIYNNEVNLVFLTICAVLLFAGAVAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLLPLFIVIPYILNLISFIGIITLLLGATLALAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       +IHSME+VVGYSPDKSQ
Sbjct: 320 AYSTMSQLGYMMLALGMGSYRSALFHLITHAYPKALLFLGSGSVIHSMETVVGYSPDKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                           P  K    +  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KHVPITKTAFFLGTLSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. ExPASy Swiss-Prot
Match: Q2QD43 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhF PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.1e-47
Identity = 119/257 (46.30%), Postives = 127/257 (49.42%), Query Frame = 0 

Query: 46  CRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM------------------- 105
           C   L  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM                   
Sbjct: 229 CAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIAIP 288

Query: 106 ----------------------------------------------DLGPF--------- 165
                                                          +G +         
Sbjct: 289 YIMNLIALIGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYQAALFHLIT 348

Query: 166 --------------IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVF 215
                         IIHSMESVVGYSPDKSQNMVLMGGLT                    
Sbjct: 349 HAYSKALLFLGSGSIIHSMESVVGYSPDKSQNMVLMGGLT-------------------- 408

[Close]
BLAST of CmaCh00G001620 vs. ExPASy Swiss-Prot
Match: Q09FZ9 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Platanus occidentalis OX=4403 GN=ndhF PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 4.0e-47
Identity = 118/264 (44.70%), Postives = 130/264 (49.24%), Query Frame = 0 

Query: 46  CRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM------------------- 105
           C   L  GAVAKSAQFPLH+WLPDAMEGPTPISALIHAATM                   
Sbjct: 229 CASLLFVGAVAKSAQFPLHIWLPDAMEGPTPISALIHAATMVAAGIFLVARLFPLFTVIP 288

Query: 106 ----------------------------------------------DLGPF--------- 165
                                                          +G +         
Sbjct: 289 YIMNLISLIGIITVLLGATLALAQKDIKRSLAYSTMSQLGYTMLALGMGSYRAALFHLIT 348

Query: 166 --------------IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVF 221
                         IIHSME+VVGYSP+KSQNM LMGGLT                    
Sbjct: 349 HAYSKALLFLGSGSIIHSMETVVGYSPEKSQNMALMGGLT-------------------- 408

[Close]
BLAST of CmaCh00G001620 vs. ExPASy Swiss-Prot
Match: A6MM84 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Buxus microphylla OX=153571 GN=ndhF PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-46
Identity = 118/256 (46.09%), Postives = 126/256 (49.22%), Query Frame = 0 

Query: 46  CRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM------------------- 105
           C   L  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM                   
Sbjct: 229 CASLLFVGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFTVIP 288

Query: 106 ----------------------------------------------DLGPF--------- 165
                                                          +G +         
Sbjct: 289 YIMNIISLIGIITILLGATLALTQKDIKRSLAYSTMSQLGYIMLALGMGSYRAALFHLIT 348

Query: 166 --------------IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVF 214
                         IIHSMES+VGYSPDKSQNM+LMGGL     KK              
Sbjct: 349 HAYSKALLFLGSGSIIHSMESIVGYSPDKSQNMILMGGL-----KK-------------- 408

[Close]
BLAST of CmaCh00G001620 vs. ExPASy Swiss-Prot
Match: Q0G9H2 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=ndhF PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-46
Identity = 118/256 (46.09%), Postives = 126/256 (49.22%), Query Frame = 0 

Query: 46  CRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM------------------- 105
           C   L  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM                   
Sbjct: 229 CAFLLFVGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPIFTVIP 288

Query: 106 ----------------------------------------------DLGPF--------- 165
                                                          +G +         
Sbjct: 289 YIMNLISLLGIITVLLGATLALAQKDIKRSLAYSTMSQLGYTMLAPGIGSYRAALFHLIT 348

Query: 166 --------------IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVF 214
                         IIHSME +VGYSPDKSQNMVLMGGLT                    
Sbjct: 349 HAYSKALLFLGSGSIIHSMEPIVGYSPDKSQNMVLMGGLT-------------------- 408

[Close]
BLAST of CmaCh00G001620 vs. ExPASy TrEMBL
Match: A0A7G8QDI9 (NAD(P)H dehydrogenase subunit 5 OS=Drypetes longifolia OX=1504425 GN=ndhF PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 9.3e-47
Identity = 127/293 (43.34%), Postives = 143/293 (48.81%), Query Frame = 0 

Query: 18  TSTFFFRPHQNPSTYVLF-SEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR       Y+++ +EV       C   L  GA+AKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFEIFNYLIYNNEVNFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLIPLFVVIPYIMNLIALIAIITVLLGAALAFAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       IIHSME++VGYSPDKSQ
Sbjct: 320 AYSTISQLGYIMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                         + P  K   ++  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KYVPITKIFFLLGILSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. ExPASy TrEMBL
Match: A0A7G8QCW3 (NAD(P)H dehydrogenase subunit 5 OS=Drypetes hainanensis OX=2763564 GN=ndhF PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 9.3e-47
Identity = 127/293 (43.34%), Postives = 143/293 (48.81%), Query Frame = 0 

Query: 18  TSTFFFRPHQNPSTYVLF-SEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR       Y+++ +EV       C   L  GA+AKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFEIFNYLIYNNEVNFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLIPLFVVIPYIMNLIALIAIITVLLGAALAFAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       IIHSME++VGYSPDKSQ
Sbjct: 320 AYSTISQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                         + P  K   ++  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KYVPITKIFFLLGILSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. ExPASy TrEMBL
Match: A0A7G8QDB3 (NAD(P)H dehydrogenase subunit 5 OS=Drypetes lateriflora OX=212297 GN=ndhF PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.7e-46
Identity = 126/293 (43.00%), Postives = 142/293 (48.46%), Query Frame = 0 

Query: 18  TSTFFFRPHQNPSTYVLF-SEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR       Y+++ +EV       C   L  GA+AKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFEIFNYLIYNNEVNFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLIPLFVVIPYIMNLIALIAIITVLLGAALAFAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       IIHSME++VGYSPDKSQ
Sbjct: 320 AYSTISQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                         + P  K   ++  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KYVPITKIFFLLGILSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. ExPASy TrEMBL
Match: A0A7G8QD37 (NAD(P)H dehydrogenase subunit 5 OS=Drypetes indica OX=1679348 GN=ndhF PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.5e-46
Identity = 126/293 (43.00%), Postives = 143/293 (48.81%), Query Frame = 0 

Query: 18  TSTFFFRPHQNPSTYVLF-SEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR       Y+++ +EV       C   L  GA+AKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFEIFNYLIYNNEVNFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLIPLFVVIPYIMNLIALIAIITVLLGAALAFAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       IIHSME++VGYSP+KSQ
Sbjct: 320 AYSTISQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPNKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                         + P  K   ++  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KYVPITKIFFLLGILSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. ExPASy TrEMBL
Match: A0A7G8QCN8 (NAD(P)H dehydrogenase subunit 5 OS=Drypetes diopa OX=2763563 GN=ndhF PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 4.6e-46
Identity = 125/293 (42.66%), Postives = 142/293 (48.46%), Query Frame = 0 

Query: 18  TSTFFFRPHQNPSTYVLF-SEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR       Y+++ +EV       C   L  GA+AKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFEIFNYLIYNNEVNFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLIPLFVVIPYIMNLIALIAIITVLLGAALAFAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       IIHSME++VGYSPDKSQ
Sbjct: 320 AYSTISQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                         + P  K   ++  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KYVPITKIFFLLGILSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: YP_009975280.1 (NADH-plastoquinone oxidoreductase subunit 5 [Drypetes hainanensis] >QNK04621.1 NADH-plastoquinone oxidoreductase subunit 5 [Drypetes hainanensis])

HSP 1 Score: 196.8 bits (499), Expect = 1.9e-46
Identity = 127/293 (43.34%), Postives = 143/293 (48.81%), Query Frame = 0 

Query: 18  TSTFFFRPHQNPSTYVLF-SEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR       Y+++ +EV       C   L  GA+AKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFEIFNYLIYNNEVNFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLIPLFVVIPYIMNLIALIAIITVLLGAALAFAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       IIHSME++VGYSPDKSQ
Sbjct: 320 AYSTISQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                         + P  K   ++  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KYVPITKIFFLLGILSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: YP_009975506.1 (NADH-plastoquinone oxidoreductase subunit 5 [Drypetes longifolia] >QNK04847.1 NADH-plastoquinone oxidoreductase subunit 5 [Drypetes longifolia])

HSP 1 Score: 196.8 bits (499), Expect = 1.9e-46
Identity = 127/293 (43.34%), Postives = 143/293 (48.81%), Query Frame = 0 

Query: 18  TSTFFFRPHQNPSTYVLF-SEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR       Y+++ +EV       C   L  GA+AKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFEIFNYLIYNNEVNFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLIPLFVVIPYIMNLIALIAIITVLLGAALAFAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       IIHSME++VGYSPDKSQ
Sbjct: 320 AYSTISQLGYIMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                         + P  K   ++  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KYVPITKIFFLLGILSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: YP_009975430.1 (NADH-plastoquinone oxidoreductase subunit 5 [Drypetes lateriflora] >QNK04771.1 NADH-plastoquinone oxidoreductase subunit 5 [Drypetes lateriflora])

HSP 1 Score: 195.3 bits (495), Expect = 5.6e-46
Identity = 126/293 (43.00%), Postives = 142/293 (48.46%), Query Frame = 0 

Query: 18  TSTFFFRPHQNPSTYVLF-SEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR       Y+++ +EV       C   L  GA+AKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFEIFNYLIYNNEVNFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLIPLFVVIPYIMNLIALIAIITVLLGAALAFAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       IIHSME++VGYSPDKSQ
Sbjct: 320 AYSTISQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                         + P  K   ++  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KYVPITKIFFLLGILSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: GFP87573.1 (NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic [Phtheirospermum japonicum])

HSP 1 Score: 195.3 bits (495), Expect = 5.6e-46
Identity = 113/220 (51.36%), Postives = 124/220 (56.36%), Query Frame = 0 

Query: 46  CRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM------------------- 105
           C   L  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM                   
Sbjct: 92  CATLLFXGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIP 151

Query: 106 -------DLGPF-----------------------IIHSMESVVGYSPDKSQNMVLMGGL 165
                   +G +                       +IHSME++VGYSPDKSQNMV MGGL
Sbjct: 152 YIMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVFMGGL 211

Query: 166 TCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFWSKDEILND 217
           T                         + P      ++   SLCGIPPLACFWSKDEILND
Sbjct: 212 T------------------------KYVPITXTSFLLGTFSLCGIPPLACFWSKDEILND 271

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: YP_009975354.1 (NADH-plastoquinone oxidoreductase subunit 5 [Drypetes indica] >QNK04695.1 NADH-plastoquinone oxidoreductase subunit 5 [Drypetes indica])

HSP 1 Score: 194.9 bits (494), Expect = 7.3e-46
Identity = 126/293 (43.00%), Postives = 143/293 (48.81%), Query Frame = 0 

Query: 18  TSTFFFRPHQNPSTYVLF-SEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTP 77
           T +F FR       Y+++ +EV       C   L  GA+AKSAQFPLHVWLPDAMEGPTP
Sbjct: 200 TGSFEFRDLFEIFNYLIYNNEVNFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTP 259

Query: 78  ISALIHAATM-------------------------------------------------- 137
           ISALIHAATM                                                  
Sbjct: 260 ISALIHAATMVAAGIFLVARLIPLFVVIPYIMNLIALIAIITVLLGAALAFAQKDIKRSL 319

Query: 138 ---------------DLGPF-----------------------IIHSMESVVGYSPDKSQ 197
                           +G +                       IIHSME++VGYSP+KSQ
Sbjct: 320 AYSTISQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPNKSQ 379

Query: 198 NMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFW 221
           NMVLMGGLT                         + P  K   ++  LSLCGIPPLACFW
Sbjct: 380 NMVLMGGLT------------------------KYVPITKIFFLLGILSLCGIPPLACFW 439

[Close]
BLAST of CmaCh00G001620 vs. TAIR 10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein )

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-45
Identity = 114/257 (44.36%), Postives = 124/257 (48.25%), Query Frame = 0 

Query: 46  CRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM------------------- 105
           C   L  G +AKSAQFPLHVWLPDAMEGPTPISALIHAATM                   
Sbjct: 229 CAFLLFVGPIAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIP 288

Query: 106 ----------------------------------------------DLGPF--------- 165
                                                          +G +         
Sbjct: 289 SIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLIT 348

Query: 166 --------------IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVF 215
                         IIHSME++VGYSPDKSQNM+LMGGLT                    
Sbjct: 349 HAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMILMGGLT-------------------- 408

[Close]
BLAST of CmaCh00G001620 vs. TAIR 10
Match: ATMG00060.1 (NADH dehydrogenase subunit 5C )

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-10
Identity = 69/222 (31.08%), Postives = 87/222 (39.19%), Query Frame = 0 

Query: 53  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM-DLGPFIIHSMESVVGYSPD------ 112
           GAV KSAQ   H W PDAMEGPTP+SA IHAATM   G F+I     +  Y P       
Sbjct: 228 GAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTALIVIT 287

Query: 113 ---------KSQNMVLMGGL-------TCANYK----KCFLIRYPFSLF----------- 172
                     +   +L   L       TC+        C +  Y  S+F           
Sbjct: 288 SAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKAL 347

Query: 173 ------VVFHP------------LPAFGPKMKFLMIVPFLSLCGIPPLACFWSKDEILN- 215
                  V H             L +  P    +M++  LSL G P L  F+SKD IL  
Sbjct: 348 LFLSAGSVIHAMSDEQDMRKMGGLASSFPLTYAMMLIGSLSLIGFPFLTGFYSKDVILEL 407

[Close]
BLAST of CmaCh00G001620 vs. TAIR 10
Match: ATMG00513.1 (NADH dehydrogenase 5A )

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-10
Identity = 69/222 (31.08%), Postives = 87/222 (39.19%), Query Frame = 0 

Query: 53  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM-DLGPFIIHSMESVVGYSPD------ 112
           GAV KSAQ   H W PDAMEGPTP+SA IHAATM   G F+I     +  Y P       
Sbjct: 228 GAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTALIVIT 287

Query: 113 ---------KSQNMVLMGGL-------TCANYK----KCFLIRYPFSLF----------- 172
                     +   +L   L       TC+        C +  Y  S+F           
Sbjct: 288 SAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKAL 347

Query: 173 ------VVFHP------------LPAFGPKMKFLMIVPFLSLCGIPPLACFWSKDEILN- 215
                  V H             L +  P    +M++  LSL G P L  F+SKD IL  
Sbjct: 348 LFLSAGSVIHAMSDEQDMRKMGGLASSFPLTYAMMLIGSLSLIGFPFLTGFYSKDVILEL 407

[Close]
BLAST of CmaCh00G001620 vs. TAIR 10
Match: ATMG00665.1 (NADH dehydrogenase 5B )

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-10
Identity = 69/222 (31.08%), Postives = 87/222 (39.19%), Query Frame = 0 

Query: 53  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM-DLGPFIIHSMESVVGYSPD------ 112
           GAV KSAQ   H W PDAMEGPTP+SA IHAATM   G F+I     +  Y P       
Sbjct: 228 GAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTALIVIT 287

Query: 113 ---------KSQNMVLMGGL-------TCANYK----KCFLIRYPFSLF----------- 172
                     +   +L   L       TC+        C +  Y  S+F           
Sbjct: 288 SAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKAL 347

Query: 173 ------VVFHP------------LPAFGPKMKFLMIVPFLSLCGIPPLACFWSKDEILN- 215
                  V H             L +  P    +M++  LSL G P L  F+SKD IL  
Sbjct: 348 LFLSAGSVIHAMSDEQDMRKMGGLASSFPLTYAMMLIGSLSLIGFPFLTGFYSKDVILEL 407

The following BLAST results are available for this feature:
BLAST of CmaCh00G001620 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9TL561.8e-4743.69NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Carpenteria californi... [more]
Q2QD433.1e-4746.30NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=36... [more]
Q09FZ94.0e-4744.70NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Platanus occidentalis... [more]
A6MM842.0e-4646.09NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Buxus microphylla OX=... [more]
Q0G9H22.0e-4646.09NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Liriodendron tulipife... [more]
BLAST of CmaCh00G001620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7G8QDI99.3e-4743.34NAD(P)H dehydrogenase subunit 5 OS=Drypetes longifolia OX=1504425 GN=ndhF PE=3 S... [more]
A0A7G8QCW39.3e-4743.34NAD(P)H dehydrogenase subunit 5 OS=Drypetes hainanensis OX=2763564 GN=ndhF PE=3 ... [more]
A0A7G8QDB32.7e-4643.00NAD(P)H dehydrogenase subunit 5 OS=Drypetes lateriflora OX=212297 GN=ndhF PE=3 S... [more]
A0A7G8QD373.5e-4643.00NAD(P)H dehydrogenase subunit 5 OS=Drypetes indica OX=1679348 GN=ndhF PE=3 SV=1[more]
A0A7G8QCN84.6e-4642.66NAD(P)H dehydrogenase subunit 5 OS=Drypetes diopa OX=2763563 GN=ndhF PE=3 SV=1[more]
BLAST of CmaCh00G001620 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009975280.11.9e-4643.34NADH-plastoquinone oxidoreductase subunit 5 [Drypetes hainanensis] >QNK04621.1 N... [more]
YP_009975506.11.9e-4643.34NADH-plastoquinone oxidoreductase subunit 5 [Drypetes longifolia] >QNK04847.1 NA... [more]
YP_009975430.15.6e-4643.00NADH-plastoquinone oxidoreductase subunit 5 [Drypetes lateriflora] >QNK04771.1 N... [more]
GFP87573.15.6e-4651.36NAD(P)H-quinone oxidoreductase subunit 5 chloroplastic [Phtheirospermum japonicu... [more]
YP_009975354.17.3e-4643.00NADH-plastoquinone oxidoreductase subunit 5 [Drypetes indica] >QNK04695.1 NADH-p... [more]
BLAST of CmaCh00G001620 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG01010.12.3e-4544.36NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein [more]
ATMG00060.15.3e-1031.08NADH dehydrogenase subunit 5C [more]
ATMG00513.15.3e-1031.08NADH dehydrogenase 5A [more]
ATMG00665.15.3e-1031.08NADH dehydrogenase 5B [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01434NADHDHGNASE5coord: 75..101
score: 38.52
coord: 53..74
score: 82.57
NoneNo IPR availablePANTHERPTHR42829NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5coord: 43..86
NoneNo IPR availablePANTHERPTHR42829:SF2NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5coord: 92..216
coord: 43..86
NoneNo IPR availablePANTHERPTHR42829NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5coord: 92..216
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitPFAMPF00361Proton_antipo_Mcoord: 142..195
e-value: 3.5E-9
score: 36.3
coord: 49..117
e-value: 1.5E-13
score: 50.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001620.1CmaCh00G001620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity