CmaCh00G001490 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G001490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRibulose-bisphosphate carboxylase large chain
LocationCma_Chr00: 9789036 .. 9792034 (+)
RNA-Seq ExpressionCmaCh00G001490
SyntenyCmaCh00G001490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTAGGGCTGGAGTATGTTCCAAGGGTTGGGCTGTTCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCTGGTGTGGGCCTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGATTATCATGCCCACGGTAAACGCTGGATAGCCAAGTGCGGAGCGAATAATTGCTGAAAGCATCTAAGTAGTACGCCCACCCCAAGATGAGTGCTCTCCTATTTCGACTTCCCCAGAGCCTCTAGTAGCACAGCCGAGACAACGATGGGTTCTCTGCGGGGATGGAGCGATAGAAGTTTTGAGAATGAAAGAGAAGAGAAAGAATGAATAAGGAGTGTTTACAGTTAAAGAATAGTGAAAGAAGGAAAAGGTGAAGACAGTAGAAAGAAGAAATAGGTTCAAGAAGGATAAATATGCTTGACCGAGTGAGAGAAGAAATAGGAAAAGGAGAGAAGACAAAAATAGTGAAACCCCAGTTTGAGAGGTGAAGTAGTGATTGAGTTCAGTCTCTTTCCTTCCAATTTAATTACCTCATAAATGGACCTAAACATAGGGAGAGACATCAATTAAATAAGAAGAAATGGTTCTTACAGTCGAATTCATGTTTCATTTGAGAATCAATAGGTGAAATCAAAGGTTCAGTCAGTCGCTTCGCTTAATCTCATTTGACTCTCCTCGACTGTAAAGTCACATTCATCTTGAGTCTTGACTTACAGTGAACTCTCATTCATCTTGAGTTTTGTCTTTCCGGTCAGGGAATAAATAGCATATAGGGGGGAAGGAGCTTATCTCTCTCTCTTTCCTTCCTGTTCCGTCTCATTCATCGAGAGTGTTTACAGGAGAATTCTTGTTTCATTTTCTTCTCCATTCATTTCTTCTTTCACTGTAAAGTCTCATTAATAAGGAGTTTCGGCTTTCCTTTCTTTTTAAAGTTTAGGTTCAGTAGCTCTCGGTTCAGGTTCCTTCTTTCATTCATTTACTGTAAAGGATGTGGAAGTGCATTGATGTATGCAGCTGAGGCATCCTAACAAACCAATAGACTTGAACCTTGATCCTACATGACCCAATCAATTCGATTAGGAACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAAGATGAAACAAAAAAAGCTCTCCCTCTCTATCTATCCAAGGGATGGAAGGGTAAAGGCCTTTGGTGTCCCCTCTAGTCAAGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCTGGTTCGATATTCTGGTGTCCTAGGCATAGAGGAACCACACCAATTCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGAGGTCCTGCAAGAGCTCGACGTAAGGATGATAAAAAGCTTAACCCCTCTAATTCTTATTACTTTTCAATATTCAACAATTTGGAAAAACACTAATAATGAAAAGGTCGTCTTATTCAAAACCCCTTCTCTCTCACTTCACACCTTGGAACACACCATTCTTATAGAGGCGCTTTCACATCTATCTTCTTAACCCGAAATGGAAAATGGCTGGGGAGAGGAAAGGTTCCTTTTTTTAGGGTACCCCCGGGAACAGATCCAGTGGAGACGAGGTGGGGCCTGTAGCTCAGAGGATTAGAGCACAACCAGGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACTGGCCAAAAAGGGAAGGACTTTTCCCTCTAGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCCTTATCTTTTTCTTTTTCGTTAATGGGTTAAGGGGGTTCCGTTATAAATTCAATATAGTATACTCTCTCCGAATTAGCATTTTTTTTTGTTTTACGCCCCGTAATTCTTCCTAAGCCAGGCTTCTGCAGAATAGCGGAGCCAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATCTCTTTGCTCGCGGTAATTGTGATGGGAGAATCGATGCCTGCATCAAAGATGTACTAGTATAGTAGTTTGAGTATTAGAATTCTTAATTGACTATTTGTAAATAGACCAGACTGTGGAACAAAGGATGATCCTGGACCTACACCGAGGTATTGCCAGTGATTCTCAAATATCGCAGAACAGAATTTGATACGATGAGATAGAATGCAATAGAAAGAAAAACAGAGGGAGAGGGAACGTGCAATAGAAATAAAGACAGAGGGAGAGGGAACGGAACGGGTTACCTACTCTTATCTATCAGAACCCTTACTATTATTATTAAAGAATTCGAAATGAATCAAATCGGTTAACAGTGACTGCTCTACCACTGAGCTACTGAGGAACAACAATAAATTAGGTTTCAGAGAATTCCATTCCCGTTCTCAACCCATGACCAATATGAGCTCGAGGTTTCCTTCGTCACTCTCGGAACTTCTTCGTAGTGGCTCAGTTCCATGCCTCATTTTATAGAGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATTCCAATTAATTCCATTAATTTAATATCCCTATGGTGTCATTGAGATAAGAGATGTCGTTTCTAGTCTATCTCGTTCTATATGGAAAGTGCAATATATATATCCACAAAAATTGCAATAGAAAAGAAGGAGGTTTGTGATGATTTGCAAATCTTTTCTACTAGGTAATCTATTAAGTATCCTTATGCATGAAGATAATCAATTCGGTCGGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATTTCTTCCTTCTCCGAGCTCTGGTTATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACAGGTTAGGTTTGATTACGAGACAGCTCAGTTCATATCGATCTATTATGCGCCGAAGTCTGCATCTAGCATTGGGTAG

mRNA sequence

ATGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTAGGGCTGGAGTATGTTCCAAGGGTTGGGCTGTTCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCTGGTGTGGGCCTTAGAGCATTGAGAGGACCTTTCCCTATACGCCCACCCCAAGATGAGTGCTCTCCTATTTCGACTTCCCCAGAGCCTCTAGTAGCACAGCCGAGACAACGATGGGTTCTCTGCGGGGATGGAGCGATAGAAGGCCCTCTTATTTCTTCCTTCTCCGAGCTCTGGTTATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACAGGTTAGGTTTGATTACGAGACAGCTCAGTTCATATCGATCTATTATGCGCCGAAGTCTGCATCTAGCATTGGGTAG

Coding sequence (CDS)

ATGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTAGGGCTGGAGTATGTTCCAAGGGTTGGGCTGTTCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCTGGTGTGGGCCTTAGAGCATTGAGAGGACCTTTCCCTATACGCCCACCCCAAGATGAGTGCTCTCCTATTTCGACTTCCCCAGAGCCTCTAGTAGCACAGCCGAGACAACGATGGGTTCTCTGCGGGGATGGAGCGATAGAAGGCCCTCTTATTTCTTCCTTCTCCGAGCTCTGGTTATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACAGGTTAGGTTTGATTACGAGACAGCTCAGTTCATATCGATCTATTATGCGCCGAAGTCTGCATCTAGCATTGGGTAG

Protein sequence

MGRFGTSMSALRHLGLEYVPRVGLFIKAVRELGSERRETVRSISGVGLRALRGPFPIRPPQDECSPISTSPEPLVAQPRQRWVLCGDGAIEGPLISSFSELWLWKKELRRKYQQQQVRFDYETAQFISIYYAPKSASSIG
Homology
[Close]
BLAST of CmaCh00G001490 vs. ExPASy TrEMBL
Match: A0A6A5L157 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00044989 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.6e-21
Identity = 60/86 (69.77%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP------------------IRPPQDECSPI 85
          IKAVRELGSERRETVRSISGVG+RALRGPFP                  + PPQDECSPI
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHPWCTSYRAHVSPPQDECSPI 69

Query: 86 STSPEPLVAQPRQRWVL--CGDGAIE 92
           TSPEP VAQPRQRWVL  CGDGA E
Sbjct: 70 PTSPEPPVAQPRQRWVLCPCGDGAKE 95

[Close]
BLAST of CmaCh00G001490 vs. ExPASy TrEMBL
Match: A0A6J5U742 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS18510 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.8e-17
Identity = 53/81 (65.43%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP------------------IRPPQDECSPI 85
          IKAVRELGSERRETVRSISGVG+RALRGPFP                  + PPQDECSPI
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHVSPPQDECSPI 69

Query: 86 STSPEPLVAQPRQRWVLCGDG 89
           TSPEP VAQPRQR   C  G
Sbjct: 70 PTSPEPPVAQPRQRGGFCPGG 90

[Close]
BLAST of CmaCh00G001490 vs. ExPASy TrEMBL
Match: A0A2N9G3L9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22064 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 50/71 (70.42%), Postives = 51/71 (71.83%), Query Frame = 0 

Query: 26  IKAVRELGSERRETVRSISGVGLRALRGPFPIRPPQDECSPISTS---PEPLVAQPRQRW 85
           IKAVRELGSERRETVRSISGVG+RALRGPFP            TS    EP VAQPRQRW
Sbjct: 873 IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRW 932

Query: 86  VL--CGDGAIE 92
           VL  CGDGA E
Sbjct: 933 VLCPCGDGATE 943

[Close]
BLAST of CmaCh00G001490 vs. ExPASy TrEMBL
Match: A0A4D6NMW7 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2182 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.3e-13
Identity = 51/72 (70.83%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP-IRPPQDE---CSPISTSPEPLVAQPRQR 85
          IKAVRELGSERRETVRSISGVG+RALRGPFP  R P      C+    + EP VAQPRQR
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCASY-RAHEPPVAQPRQR 69

Query: 86 WVLC--GDGAIE 92
          WVLC  GDGA E
Sbjct: 70 WVLCPSGDGAKE 80

[Close]
BLAST of CmaCh00G001490 vs. ExPASy TrEMBL
Match: A0A5N6LV43 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_37989 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-12
Identity = 49/71 (69.01%), Postives = 50/71 (70.42%), Query Frame = 0 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFPIRPPQDECSPISTS---PEPLVAQPRQRW 85
          IKAVRELGSERRETVRSISGVG+RALRGPFP            TS    EP VAQPRQR 
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRQ 69

Query: 86 VL--CGDGAIE 92
          VL  CGDGA E
Sbjct: 70 VLCPCGDGATE 80

[Close]
BLAST of CmaCh00G001490 vs. NCBI nr
Match: KAF1855287.1 (hypothetical protein Lal_00044989 [Lupinus albus])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-20
Identity = 60/86 (69.77%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP------------------IRPPQDECSPI 85
          IKAVRELGSERRETVRSISGVG+RALRGPFP                  + PPQDECSPI
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHPWCTSYRAHVSPPQDECSPI 69

Query: 86 STSPEPLVAQPRQRWVL--CGDGAIE 92
           TSPEP VAQPRQRWVL  CGDGA E
Sbjct: 70 PTSPEPPVAQPRQRWVLCPCGDGAKE 95

[Close]
BLAST of CmaCh00G001490 vs. NCBI nr
Match: CAB4272013.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 97.8 bits (242), Expect = 7.7e-17
Identity = 53/81 (65.43%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP------------------IRPPQDECSPI 85
          IKAVRELGSERRETVRSISGVG+RALRGPFP                  + PPQDECSPI
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHVSPPQDECSPI 69

Query: 86 STSPEPLVAQPRQRWVLCGDG 89
           TSPEP VAQPRQR   C  G
Sbjct: 70 PTSPEPPVAQPRQRGGFCPGG 90

[Close]
BLAST of CmaCh00G001490 vs. NCBI nr
Match: QCE15173.1 (hypothetical protein DEO72_LG11g2182 [Vigna unguiculata])

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-12
Identity = 51/72 (70.83%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP-IRPPQDE---CSPISTSPEPLVAQPRQR 85
          IKAVRELGSERRETVRSISGVG+RALRGPFP  R P      C+    + EP VAQPRQR
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCASY-RAHEPPVAQPRQR 69

Query: 86 WVLC--GDGAIE 92
          WVLC  GDGA E
Sbjct: 70 WVLCPSGDGAKE 80

[Close]
BLAST of CmaCh00G001490 vs. NCBI nr
Match: QHO28132.1 (uncharacterized protein DS421_7g214040 [Arachis hypogaea])

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-12
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0 

Query: 26  IKAVRELGSERRETVRSISGVGLRALRGPFP-IRPPQDE---CSPISTSPEPLVAQPRQR 85
           IKAVRELGSERRETVRSISGVG+RALRGPFP  R P      C+    + EP VAQPRQR
Sbjct: 46  IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCASY-RAHEPPVAQPRQR 105

Query: 86  WVL--CGDGAIE 92
           WV   CGDGA E
Sbjct: 106 WVFCPCGDGAKE 116

[Close]
BLAST of CmaCh00G001490 vs. NCBI nr
Match: KAD2804612.1 (hypothetical protein E3N88_37989 [Mikania micrantha])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 49/71 (69.01%), Postives = 50/71 (70.42%), Query Frame = 0 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFPIRPPQDECSPISTS---PEPLVAQPRQRW 85
          IKAVRELGSERRETVRSISGVG+RALRGPFP            TS    EP VAQPRQR 
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRQ 69

Query: 86 VL--CGDGAIE 92
          VL  CGDGA E
Sbjct: 70 VLCPCGDGATE 80

The following BLAST results are available for this feature:
BLAST of CmaCh00G001490 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5L1575.6e-2169.77Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00044989 PE=4 SV=1[more]
A0A6J5U7423.8e-1765.43Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS18510 PE=4 S... [more]
A0A2N9G3L91.9e-1370.42Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22064 PE=4 SV=1[more]
A0A4D6NMW77.3e-1370.83Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2182 PE=4 SV=... [more]
A0A5N6LV436.2e-1269.01Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_37989 PE=4 SV=1[more]
BLAST of CmaCh00G001490 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF1855287.11.2e-2069.77hypothetical protein Lal_00044989 [Lupinus albus][more]
CAB4272013.17.7e-1765.43unnamed protein product [Prunus armeniaca][more]
QCE15173.11.5e-1270.83hypothetical protein DEO72_LG11g2182 [Vigna unguiculata][more]
QHO28132.14.4e-1269.44uncharacterized protein DS421_7g214040 [Arachis hypogaea][more]
KAD2804612.11.3e-1169.01hypothetical protein E3N88_37989 [Mikania micrantha][more]
BLAST of CmaCh00G001490 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001490.1CmaCh00G001490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane