CmaCh00G001340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	Cma_Chr00: 7634516 .. 7634905 (-)
RNA-Seq Expression	CmaCh00G001340
Synteny	CmaCh00G001340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACGACAATTCGTGCATTAGTCTTTTCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGCAAGATGTCAATCCATGTTCAATCACCATTTAGCGTAGCGGGTCTGCTAGGACTTGGGGCTCTTTCTTGGGCGGGACATCAAGTACACCTATCTTTACCGATTAACCAATTTCTAAATGATGCTGGAGTTGATCCTAAAGAGATTCCACTTCCTCATGAATTTCTCTTGAATCGGGATCTTTTGGCGCAACTTTCTTCTAGTAAAGCGGAGGGAGCAACCCCATTTTTCACTTGGAATTGGTCAAAGAGGAATTTCTGA

mRNA sequence

ATGTGGAGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACGACAATTCGTGCATTAGTCTTTTCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGCAAGATGTCAATCCATGTTCAATCACCATTTAGCGTAGCGGGTCTGCTAGGACTTGGGGCTCTTTCTTGGGCGGGACATCAAGTACACCTATCTTTACCGATTAACCAATTTCTAAATGATGCTGGAGTTGATCCTAAAGAGATTCCACTTCCTCATGAATTTCTCTTGAATCGGGATCTTTTGGCGCAACTTTCTTCTAGTAAAGCGGAGGGAGCAACCCCATTTTTCACTTGGAATTGGTCAAAGAGGAATTTCTGA

Coding sequence (CDS)

ATGTGGAGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACGACAATTCGTGCATTAGTCTTTTCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGCAAGATGTCAATCCATGTTCAATCACCATTTAGCGTAGCGGGTCTGCTAGGACTTGGGGCTCTTTCTTGGGCGGGACATCAAGTACACCTATCTTTACCGATTAACCAATTTCTAAATGATGCTGGAGTTGATCCTAAAGAGATTCCACTTCCTCATGAATTTCTCTTGAATCGGGATCTTTTGGCGCAACTTTCTTCTAGTAAAGCGGAGGGAGCAACCCCATTTTTCACTTGGAATTGGTCAAAGAGGAATTTCTGA

Protein sequence

MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLLGLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFFTWNWSKRNF

Homology

[Close]

BLAST of CmaCh00G001340 vs. ExPASy Swiss-Prot
Match: A4QLA6 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lepidium virginicum OX=59292 GN=psaA PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-52
Identity = 102/126 (80.95%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           +WRASGITSELQLYCT I ALVFSALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 LWRASGITSELQLYCTAIGALVFSALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. ExPASy Swiss-Prot
Match: Q2QD89 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-52
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGIT+ELQLYCT I ALVF+ALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. ExPASy Swiss-Prot
Match: Q9MTN8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oenothera elata subsp. hookeri OX=85636 GN=psaA PE=3 SV=2)

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-52
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           +WRASGITSELQLYCT I ALVF+ALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 LWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. ExPASy Swiss-Prot
Match: Q14FF7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Populus alba OX=43335 GN=psaA PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-52
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           +WRASGITSELQLYCT I ALVF+ALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 LWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. ExPASy Swiss-Prot
Match: Q2MII7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum bulbocastanum OX=147425 GN=psaA PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-52
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           +WRASGITSELQLYCT I ALVF+ALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 LWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. ExPASy TrEMBL
Match: A0A0S2IFS3 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita moschata OX=3662 GN=psaA PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.1e-50
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGITSELQLYCT I ALVFSALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITSELQLYCTAIGALVFSALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. ExPASy TrEMBL
Match: A0A0S2IEI4 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita argyrosperma OX=34294 GN=psaA PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.1e-50
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGITSELQLYCT I ALVFSALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITSELQLYCTAIGALVFSALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. ExPASy TrEMBL
Match: A0A2H4T205 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita maxima OX=3661 GN=psaA PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.1e-50
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGITSELQLYCT I ALVFSALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITSELQLYCTAIGALVFSALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. ExPASy TrEMBL
Match: A0A0S2IGT7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo var. texana OX=37651 GN=psaA PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.1e-50
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGITSELQLYCT I ALVFSALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITSELQLYCTAIGALVFSALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. ExPASy TrEMBL
Match: A0A0S2IG57 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo subsp. fraterna OX=37649 GN=psaA PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.1e-50
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGITSELQLYCT I ALVFSALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITSELQLYCTAIGALVFSALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. NCBI nr
Match: YP_009447450.1 (photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita maxima] >ALO22061.1 PsaA [Cucurbita ecuadorensis] >ALO22332.1 PsaA [Cucurbita maxima subsp. andreana] >ATY69900.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita maxima])

HSP 1 Score: 207.6 bits (527), Expect = 6.4e-50
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGITSELQLYCT I ALVFSALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITSELQLYCTAIGALVFSALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. NCBI nr
Match: YP_009447535.1 (photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita moschata] >YP_009505080.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita pepo] >ALO21767.1 PsaA [Cucurbita argyrosperma] >ALO21803.1 PsaA [Cucurbita argyrosperma var. palmeri] >ALO21842.1 PsaA [Cucurbita argyrosperma subsp. sororia] >ALO21919.1 PsaA [Cucurbita cordata] >ALO21989.1 PsaA [Cucurbita digitata] >ALO22130.1 PsaA [Cucurbita ficifolia] >ALO22171.1 PsaA [Cucurbita foetidissima] >ALO22221.1 PsaA [Cucurbita lundelliana] >ALO22468.1 PsaA [Cucurbita okeechobeensis] >ALO22517.1 PsaA [Cucurbita okeechobeensis subsp. martinezii] >ALO22544.1 PsaA [Cucurbita pepo subsp. fraterna] >ALO22638.1 PsaA [Cucurbita pepo subsp. ovifera] >ALO22714.1 PsaA [Cucurbita pepo var. ozarkana] >ALO22742.1 PsaA [Cucurbita pepo subsp. pepo] >ALO22858.1 PsaA [Cucurbita pepo var. texana] >ALO22905.1 PsaA [Cucurbita pedatifolia])

HSP 1 Score: 207.6 bits (527), Expect = 6.4e-50
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGITSELQLYCT I ALVFSALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITSELQLYCTAIGALVFSALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. NCBI nr
Match: YP_009751990.1 (photosystem I P700 apoprotein A1 [Cionosicys macranthus] >QIT05231.1 photosystem I P700 apoprotein A1 [Cionosicys macranthus])

HSP 1 Score: 207.6 bits (527), Expect = 6.4e-50
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGITSELQLYCT I ALVFSALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITSELQLYCTAIGALVFSALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. NCBI nr
Match: YP_010015692.1 (photosystem I P700 apoprotein A1 [Rhipsalis baccifera] >QOI72676.1 photosystem I P700 apoprotein A1 [Rhipsalis baccifera])

HSP 1 Score: 207.2 bits (526), Expect = 8.4e-50
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           +WRASGITSELQLYCT I ALVF+ALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQLS S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLSPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. NCBI nr
Match: YP_009561940.1 (photosystem I P700 chlorophyll a apoprotein A1 [Phytolacca insularis] >QAT97944.1 photosystem I P700 chlorophyll a apoprotein A1 [Phytolacca insularis])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 102/126 (80.95%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           MWRASGITSELQLYCT I ALVF+ALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 MWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

[Close]

BLAST of CmaCh00G001340 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 204.9 bits (520), Expect = 3.9e-53
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MWRASGITSELQLYCTTIRALVFSALMLFAGWFHYHKAAPKLACKMSIHVQSPFSVAGLL 60
           +WRASGITSELQLYCT I ALVF+ALMLFAGWFHYHKAAPKLA    +       +AGLL
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 61  GLGALSWAGHQVHLSLPINQFLNDAGVDPKEIPLPHEFLLNRDLLAQLSSSKAEGATPFF 120
           GLG+LSWAGHQVH+SLPINQFLN AGVDPKEIPLPHEF+LNRDLLAQL  S AEGATPFF
Sbjct: 204 GLGSLSWAGHQVHVSLPINQFLN-AGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFF 263

Query: 121 TWNWSK 127
           T NWSK
Sbjct: 264 TLNWSK 268

The following BLAST results are available for this feature:

BLAST of CmaCh00G001340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QLA6	1.9e-52	80.95	Photosystem I P700 chlorophyll a apoprotein A1 OS=Lepidium virginicum OX=59292 G...	[more]
Q2QD89	4.2e-52	80.16	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa...	[more]
Q9MTN8	4.2e-52	80.16	Photosystem I P700 chlorophyll a apoprotein A1 OS=Oenothera elata subsp. hookeri...	[more]
Q14FF7	4.2e-52	80.16	Photosystem I P700 chlorophyll a apoprotein A1 OS=Populus alba OX=43335 GN=psaA ...	[more]
Q2MII7	4.2e-52	80.16	Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum bulbocastanum OX=14742...	[more]

BLAST of CmaCh00G001340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IFS3	3.1e-50	81.75	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0S2IEI4	3.1e-50	81.75	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita argyrosperma OX=3429...	[more]
A0A2H4T205	3.1e-50	81.75	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita maxima OX=3661 GN=ps...	[more]
A0A0S2IGT7	3.1e-50	81.75	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo var. texana OX=...	[more]
A0A0S2IG57	3.1e-50	81.75	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo subsp. fraterna...	[more]

BLAST of CmaCh00G001340 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009447450.1	6.4e-50	81.75	photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita maxima] >ALO22061.1 Ps...	[more]
YP_009447535.1	6.4e-50	81.75	photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita moschata] >YP_00950508...	[more]
YP_009751990.1	6.4e-50	81.75	photosystem I P700 apoprotein A1 [Cionosicys macranthus] >QIT05231.1 photosystem...	[more]
YP_010015692.1	8.4e-50	80.95	photosystem I P700 apoprotein A1 [Rhipsalis baccifera] >QOI72676.1 photosystem I...	[more]
YP_009561940.1	1.4e-49	80.95	photosystem I P700 chlorophyll a apoprotein A1 [Phytolacca insularis] >QAT97944....	[more]

BLAST of CmaCh00G001340 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	3.9e-53	80.16	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PRINTS	PR00257	PHOTSYSPSAAB	coord: 52..76 score: 49.66 coord: 13..37 score: 57.56
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 1..126 e-value: 9.2E-36 score: 123.3
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..128 e-value: 2.2E-39 score: 136.9
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 1..125
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 1..126
IPR006243	Photosystem I PsaA	PANTHER	PTHR30128:SF60	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001340.1	CmaCh00G001340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0046872	metal ion binding