CmaCh00G001330 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G001330
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr00: 7633444 .. 7633663 (-)
RNA-Seq ExpressionCmaCh00G001330
SyntenyCmaCh00G001330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCGGGAAGAGGGGGTAAATGTCAAGTATTCGCTTGCTTGGGATCATGTCTTCTTAGGGCTATTTTCGATGGACAATTCCATTTTAGTAGTAAGTAATATGCCTGCCATTTACAGTGGAAAATGCAGTCAGATGTTTGGAGTAGTGTAAGTGATCAAGGGGTAGCAACTCATATTACGGGAGGAAACTTTGCGCAGAGTTCCATCATTACTATTAA

mRNA sequence

ATGGGCCGGGAAGAGGGGGTAAATGTCAAGTATTCGCTTGCTTGGGATCATGTCTTCTTAGGGCTATTTTCGATGGACAATTCCATTTTAGTAGTAAGTAATATGCCTGCCATTTACAGTGGAAAATGCAGTCAGATGTTTGGAGTAGTGGGTAGCAACTCATATTACGGGAGGAAACTTTGCGCAGAGTTCCATCATTACTATTAA

Coding sequence (CDS)

ATGGGCCGGGAAGAGGGGGTAAATGTCAAGTATTCGCTTGCTTGGGATCATGTCTTCTTAGGGCTATTTTCGATGGACAATTCCATTTTAGTAGTAAGTAATATGCCTGCCATTTACAGTGGAAAATGCAGTCAGATGTTTGGAGTAGTGGGTAGCAACTCATATTACGGGAGGAAACTTTGCGCAGAGTTCCATCATTACTATTAA

Protein sequence

MGREEGVNVKYSLAWDHVFLGLFSMDNSILVVSNMPAIYSGKCSQMFGVVGSNSYYGRKLCAEFHHYY
Homology
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BLAST of CmaCh00G001330 vs. ExPASy TrEMBL
Match: A0A2J6KZS4 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X80221 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.8e-04
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 0 

Query: 14 AWDHVFLGLFSMDNSILVVSNMPAIYSGKC-SQMFGVVGSNSYYGRKLCAEFHHY 68
          AWDHVFLGLF M NSI    N+      +C  Q      SNSY+GRKLC EF++Y
Sbjct: 44 AWDHVFLGLFGMYNSISEFENVV-----RCLGQYKRSRSSNSYHGRKLCVEFYYY 93

The following BLAST results are available for this feature:
BLAST of CmaCh00G001330 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2J6KZS48.8e-0452.73Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X80221 PE=4 SV=1[more]
BLAST of CmaCh00G001330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001330.1CmaCh00G001330.1mRNA