CmaCh00G001310 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G001310
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCCHC-type domain-containing protein
LocationCma_Chr00: 7619558 .. 7620126 (-)
RNA-Seq ExpressionCmaCh00G001310
SyntenyCmaCh00G001310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAATCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGAAAATTTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTAATTTACAGCCTTACATGCTATGCAACGAGCACAAACTTTATGTACATCATGTCTCATTTTAG

mRNA sequence

ATGGAAGAAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGAAAATTTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTAATTTACAGCCTTACATGCTATGCAACGAGCACAAACTTTATGTACATCATGTCTCATTTTAG

Coding sequence (CDS)

ATGGAAGAAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGAAAATTTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTAATTTACAGCCTTACATGCTATGCAACGAGCACAAACTTTATGTACATCATGTCTCATTTTAG

Protein sequence

MEEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTNLQPYMLCNEHKLYVHHVSF
Homology
[Close]
BLAST of CmaCh00G001310 vs. ExPASy TrEMBL
Match: A0A6J1DWE9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia OX=3673 GN=LOC111024115 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.9e-54
Identity = 106/143 (74.13%), Postives = 120/143 (83.92%), Query Frame = 0 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + E Y+QW K VE VF+CHNFS+EKKV LC+AQFK YA  WWDKLMS RRRNLEAPIDSW
Sbjct: 136 DPEAYIQWXKEVEFVFDCHNFSEEKKVRLCLAQFKDYAVTWWDKLMSIRRRNLEAPIDSW 195

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            EFKE +R+RFVP++FHRD AQKLQ L+QG K VEDYYKEMDTLM+RL+L+EDME LMAR
Sbjct: 196 YEFKELLRRRFVPRHFHRDTAQKLQVLRQGSKSVEDYYKEMDTLMNRLDLEEDMENLMAR 255

Query: 122 FLNGLNTEIADKTNLQPYMLCNE 145
           FLNGLN EIADK +LQPY    E
Sbjct: 256 FLNGLNKEIADKVDLQPYFNIEE 278

[Close]
BLAST of CmaCh00G001310 vs. ExPASy TrEMBL
Match: A0A6J1DFN2 (uncharacterized protein LOC111020057 OS=Momordica charantia OX=3673 GN=LOC111020057 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.6e-53
Identity = 104/138 (75.36%), Postives = 120/138 (86.96%), Query Frame = 0 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + EEYLQWE  VESVF CHNFS+EKK+ L +A+FKQYAQ WWDKLMS RRRNLEAPI SW
Sbjct: 84  DPEEYLQWENEVESVFVCHNFSEEKKIQLFVARFKQYAQTWWDKLMSRRRRNLEAPIVSW 143

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            EF ES+++RFVP++F RDMAQKLQAL+QG K VEDYYKE+DTLMDR++LDEDM+ LMAR
Sbjct: 144 YEFNESLKERFVPKHFERDMAQKLQALRQGNKSVEDYYKEIDTLMDRIDLDEDMKQLMAR 203

Query: 122 FLNGLNTEIADKTNLQPY 140
           FLN LN EIADK +LQPY
Sbjct: 204 FLNDLNKEIADKVDLQPY 221

[Close]
BLAST of CmaCh00G001310 vs. ExPASy TrEMBL
Match: A0A5A7TFU8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G00290 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.7e-52
Identity = 102/137 (74.45%), Postives = 115/137 (83.94%), Query Frame = 0 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + EEY+QWEK VE+VF CHNF DE+KV  C+++FK YA  WWDKLMS RRRNLEAPIDS 
Sbjct: 55  DPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKLMSRRRRNLEAPIDSC 114

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            EFKES RKRFVP +F RDMAQKLQAL+QG K VEDYYKEMDTLMDRL+LDE+ME L+ R
Sbjct: 115 YEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLMDRLDLDEEMETLVER 174

Query: 122 FLNGLNTEIADKTNLQP 139
           FLNGLN EIADK + QP
Sbjct: 175 FLNGLNKEIADKVDWQP 191

[Close]
BLAST of CmaCh00G001310 vs. ExPASy TrEMBL
Match: A0A5D3CFQ1 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00990 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.1e-51
Identity = 102/138 (73.91%), Postives = 114/138 (82.61%), Query Frame = 0 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + EEY+QWEK VE+VF CHNF DE+KV  C+++FK YA  WWDKLMS RRRNLEAPIDS 
Sbjct: 55  DPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKLMSRRRRNLEAPIDSC 114

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            EFKES RKRFVP +F RDMAQKLQAL+QG K VEDYYKEMDTLMDRL+LDE+ME L+ R
Sbjct: 115 YEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLMDRLDLDEEMETLVER 174

Query: 122 FLNGLNTEIADKTNLQPY 140
           FLNGLN EIADK N   Y
Sbjct: 175 FLNGLNKEIADKENKSEY 192

[Close]
BLAST of CmaCh00G001310 vs. ExPASy TrEMBL
Match: A0A6J1DX46 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 OS=Momordica charantia OX=3673 GN=LOC111025268 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 100/134 (74.63%), Postives = 112/134 (83.58%), Query Frame = 0 

Query: 11  KTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRK 70
           K VE VF+CHNFS+EKKV LC+AQFK Y   WWDKLMS RRRNLEAPIDSW EFKE +R+
Sbjct: 25  KEVEFVFDCHNFSEEKKVRLCLAQFKDYVVTWWDKLMSIRRRNLEAPIDSWYEFKELLRR 84

Query: 71  RFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEI 130
           RFVP++FHR  AQKLQ L+QG K VEDYYKEMDTLM+RL+L+EDME LMARFLNGLN EI
Sbjct: 85  RFVPRHFHRKTAQKLQVLRQGSKSVEDYYKEMDTLMNRLDLEEDMENLMARFLNGLNKEI 144

Query: 131 ADKTNLQPYMLCNE 145
           ADK +LQPY    E
Sbjct: 145 ADKVDLQPYFNIEE 158

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: XP_023520835.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.7 bits (683), Expect = 6.2e-68
Identity = 130/138 (94.20%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + EEYLQWEKTVESVFNCHNFSD+KKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW
Sbjct: 121 DPEEYLQWEKTVESVFNCHNFSDKKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            EFKESMRKRFVPQYF RDMAQKLQALKQGRK VEDYYKEMDTLMDRL+LDEDMEALMAR
Sbjct: 181 YEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLDLDEDMEALMAR 240

Query: 122 FLNGLNTEIADKTNLQPY 140
           FLNGLNTEIADKT+LQPY
Sbjct: 241 FLNGLNTEIADKTDLQPY 258

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: XP_023553652.1 (uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 9.0e-67
Identity = 127/138 (92.03%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + EEYL+WEKT+ESVF CHNFSD+KKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW
Sbjct: 121 DPEEYLEWEKTIESVFKCHNFSDKKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            EFKESMRKRFVPQYF RDMAQKLQALKQGRK VEDYYKEMDTLMDRL+LDEDMEALMAR
Sbjct: 181 YEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLDLDEDMEALMAR 240

Query: 122 FLNGLNTEIADKTNLQPY 140
           FLNGLNTEIADKT+LQPY
Sbjct: 241 FLNGLNTEIADKTDLQPY 258

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: XP_023541047.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111801285 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.1 bits (658), Expect = 4.9e-65
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 0 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + +EY +WEKTV+SVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW
Sbjct: 121 DPDEYPEWEKTVDSVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
           VEFKESMRK FVPQYF RDMAQKLQALKQGRK  EDYYKEMDTLMDRLELDE+MEALMAR
Sbjct: 181 VEFKESMRKCFVPQYFQRDMAQKLQALKQGRKSXEDYYKEMDTLMDRLELDEEMEALMAR 240

Query: 122 FLNGLNTEIADKTNLQPY 140
           FLNGLNT+IADKT+LQPY
Sbjct: 241 FLNGLNTKIADKTDLQPY 258

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: XP_023520282.1 (uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 123/138 (89.13%), Postives = 126/138 (91.30%), Query Frame = 0 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + EEYLQWEKTVESVFNCHNFSD+KKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW
Sbjct: 121 DPEEYLQWEKTVESVFNCHNFSDKKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            EFKESMRKRFVPQYF RDMAQKLQALKQGRK VEDYYKEMDTLMDRL        LMAR
Sbjct: 181 YEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLASMRTWSPLMAR 240

Query: 122 FLNGLNTEIADKTNLQPY 140
           FLNGLNTEIADKT+LQPY
Sbjct: 241 FLNGLNTEIADKTDLQPY 258

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: XP_022157414.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia])

HSP 1 Score: 221.9 bits (564), Expect = 3.9e-54
Identity = 106/143 (74.13%), Postives = 120/143 (83.92%), Query Frame = 0 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + E Y+QW K VE VF+CHNFS+EKKV LC+AQFK YA  WWDKLMS RRRNLEAPIDSW
Sbjct: 136 DPEAYIQWXKEVEFVFDCHNFSEEKKVRLCLAQFKDYAVTWWDKLMSIRRRNLEAPIDSW 195

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            EFKE +R+RFVP++FHRD AQKLQ L+QG K VEDYYKEMDTLM+RL+L+EDME LMAR
Sbjct: 196 YEFKELLRRRFVPRHFHRDTAQKLQVLRQGSKSVEDYYKEMDTLMNRLDLEEDMENLMAR 255

Query: 122 FLNGLNTEIADKTNLQPYMLCNE 145
           FLNGLN EIADK +LQPY    E
Sbjct: 256 FLNGLNKEIADKVDLQPYFNIEE 278

The following BLAST results are available for this feature:
BLAST of CmaCh00G001310 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DWE91.9e-5474.13LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia... [more]
A0A6J1DFN21.6e-5375.36uncharacterized protein LOC111020057 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A5A7TFU86.7e-5274.45Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CFQ11.1e-5173.91CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A6J1DX462.8e-5074.63LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 OS=Momordica charantia... [more]
BLAST of CmaCh00G001310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023520835.16.2e-6894.20LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp.... [more]
XP_023553652.19.0e-6792.03uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo][more]
XP_023541047.14.9e-6590.58LOW QUALITY PROTEIN: uncharacterized protein LOC111801285 [Cucurbita pepo subsp.... [more]
XP_023520282.11.3e-6289.13uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo][more]
XP_022157414.13.9e-5474.13LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia][more]
BLAST of CmaCh00G001310 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 34..128
e-value: 1.7E-20
score: 73.0
NoneNo IPR availablePANTHERPTHR35046:SF6ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEINcoord: 2..142
NoneNo IPR availablePANTHERPTHR35046ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEINcoord: 2..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001310.1CmaCh00G001310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding