CmaCh00G001300 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G001300
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPhotosystem I PsaA/PsaB
LocationCma_Chr00: 7598218 .. 7604740 (-)
RNA-Seq ExpressionCmaCh00G001300
SyntenyCmaCh00G001300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGGTAATTCAGTCTTATGGTTCTTCTTTCTTCATTATCCGCATATGGCCCGTTCATTTTTCCTAGGTGCTCATTTTGGTATGGGCTTTGAGTTTCATCTTTCTATTCTATAGGCGTGGTTATTGGCAAGAACTTATTGAATCCAGCGGTTTGGGCTCATAATCAATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCGCTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGAATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGATCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTGTAAATCTCTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTGTATTTCATTTATGCATTTTAAGACTTTATTTACAATAGGTTACAATTACATAATGGTTAATTATGGCCATTAGGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGCGTAAGAGACTTGAAAAATATAGTAAAAAGAAGCATTTGTGCTCTTCTTTAGCCAAAGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGCAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTCCCCTTGTAGTGGTTCCTTTTCTTATCATTTGGTATCAGAGCTTAAGACTTAAGATCGGATATATGTTTCCTTTGCATTTCTTTTCAATTTGTTTTTATCTTTTTAGTTTTTAATCGACCCAAAATAAAAAAAAAAAATCAAATATGAGCTCTACTAGAAAATTTGAGAGGTGAGGATGAGAGATTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAAATTCGAGGACAAATTCTCTTGAAAAAGTGAAGAATGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATTAAAAGATGTTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTCAAGACTTTATTTACTATAGGTTACAATTACATAATGGTTAATTATGGTCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGCATGTTTTATGTGTAAGAGACTTGAAAAATATAGTAAAAAGAAGCATTTGTGCTCTTCTTTAGCCAATGACTATGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATATTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTTCCCTTGTAGTGATTTCTTTTCTTATCATATTGCCACATCCCCAAGGATTAGGACCACTTTAGCTGGGTCAGTGTAATCTTTATGCTCACCCGATTCAAATAATCATTGATTTGGTACTGCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTTTCTCTGGGATTCTCCATCCGCAAAGTTTCTAGCTGACTTATATGGCTCATCATCATTTAGCTATTGCATTTCTTTTTCTTGTTGCTGGTCATATGTATAGATAGAACTAACTTCGGGATTGGACAAAGTATAAAAGATCTTTTAGAAGCACATATTCGGGGGACGATTGGGGCGTGGACATAAAGTTATGACACAATCAATAATTCTCTTCATTTTCAATTAGGCCTTACTTTAGCCTCTTTAGGGGTTATTAGATTACATTACTGACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATCCCAAACAGAATGAGGATAATGTAATGTATTGGCGAGAATGTTAGACCATAAAGAAAAGAAGCTATCAAATATATATCCCATTGAAGTTGGGCCAGCCTTTTTCTGGGGGGTTCCATACTTTGGGGCTTTACGTTCGTTCATAATGATGTCATGCATGCTTTTGGTACTCCGGAGAAAGAAATCTTAATCGACACCCATATTTGCCCAATAGATTCAATCTGCTCATGGTCAAACTGAATATAGGTTCGATGTCCTTTTATCTTCAACAAGCGGCCTGACGTTCAATGCTGTTAAATAGTAATGCACTATTCTTCACAATAGGGCCCGAAGACTGATTGGTTCATCATGCTATTGCTTTAGGGTTACATACAACTACATTGATCTTAGTAAAAGGTGTTTTAGATGGACATGGTTCCAAATGAATGCCGGATAAAAAGGATTTTGGTTATAGTTTTCCTTGGTCTGGGACGAGGTGGTACTTGTTATATTTTGGCTTGGGACGCCTTTGGCCGTTTTCTGGATGTGAAATACCATTGGTTACTTTAGATTGGCACTGGAAGCACATCACATTGTGTATGGCAGGGTAACGTTTCACAGTTTCATTCATCTTTCACTTACTTATTTGCTGGGATGGTTAAGAGATTCTTTATGGTTAAACTCTTCACAACTTCTCAATGGGATAATTAGAATTAATCCTTGTTGGTATGAATTTTATCAGTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTATGAATTTCCTGGCGGGGGGATATTGGTAAGAAGAATTTATTGAAACTTTAGTGTGGGCTCACGAACGCACACCCTTGGCTAATTTGATTTGAGAGAGAACCAACCCATTGGCTCTTTCTTTCCATTGTGCAAGATTTGTTGGATTAGCCCCCTTTTTCGTAGGTTATATATTGACTTATGCGGCTTTCTGCCTCTACATCAGGCTAATTTGGTTCATTTTGTATGTGTTGTATCCTATCAAATCTCATCTCTTTGGAGAAGGGGATTTTCTTTCTTATATTTCTACATCTAGGATCTGACTTGTATCATTGATACTACTAGGAATGGAATCATTATGGCAAGGAAAAGTGTAATAGGGAGAGGGAGAAGAAGAGGGCAAAATTGGAACACAAATCTGATTCGTCCATCCTTGAAAACAGAAATAAGCAAAGTTCCATCCTTGAGTGAGAAATGGGAAATTCATGGCAAGTGACAATCCCCACCGCGTAATAGTGCACCCACACGTCTTCATCGACCGACGTTGTTTTTTCACCGGAAGACCGAGAGCTAACGATCGAGACTTTCTTTGGGCTATCTGGACACATACTGACTTATACTTCGGGAAATGGTTCATGCATGCTTGTTGCCTGGGGGAAGGAAGAAGATCAAGTAAGGATTCAAATAGCCCTTTTTATTCTTTTCTATGATCAGGACCCCCTTTCTTTCTTTCTTTACCATTCTCTGTATAAATCTTGACTATTCTATTTGTAAAGATATGGTTATAGGGGCGCGCATTCAATCTTTCTTTGTCTATTAGTTCACAGTTNNNNGACTATTCTATTTGTAAAGATATGGTTATAGGGGCGCGCATTCAATCTTTCTTTGTCTATTAGTTCACAGTTCTTCTCTTCGCGAGGTGGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTTCAGTCACGAGTTCAAATTCTGTCTCCTCTAAATCTCATTCTTTTGTCTCAAAAGAGGTTTGATCTTGGTAACTATAATGACTATTAATATTAGCTTTGTTTTCTTTACGGATGGGAGGAAAAGAATTAGGGGAGGGTCGTTTCATTTCATTTTTGTATCAAGAACGAAGAGGTTCAAGAGATAAGAGAATTAAGGATACCCACCAACCAACCAGACTAATCCAATCCATATCGATGTACCGAAAAATATTACTTGTTCGCCGACCAACCCCCAGGAGAAGCAAATGCAACTAACCAGTAAGATTATTGAAGTACTAATTAATGAGCCAATTGAAAAGCTATAATCATGCTTCTCTTCTAATCCTCCATATTATTAAAAAAGTCAGCCACCATTTTGATAAAATGTACCAGGTAGAGATTGAAATGTATTCTTCTATATTACTTCCTTCTTTTTTAAGACTTGAGCATGTATGGGATTCAGGGTAGTAGTCTTTTTTTCATTCAGAAATAAGGGAGATAATCGATCATATATATCTAGATCCATATAAATAGACTTCTAGATTTACGCCTGAGATACAGTCTAGACTATAATGGTATCAACTTATATGTCAATGTTCTATTCTATTCGGTGGGATGGAATATAAAGAAAATGGAAATTCTCTTTCGGAGAGATGGCCGTGTGGTTGATAGCTCCGGGCTTGAAAACCGGTCTGGTATAGTGTTCGAAATAAAGAACTATCGAGGGTTCGAATCCCTCTCTGTCCTTTTGCTCGGCAAATAGATTCTTTATTTGATTGGGTTTGTTTCCCCGGCTTAGTATCATAAAGGGGAATGGCTCGGCTAGGTGGGATAGATAGCCCAGCCAAAATAGAAAACAAAGAGTAGATAGAAATGAAGAAAGGAAAAAGGAATTGATCGTTTGAACCTGTTCTTTTCATGACGTGAATAGGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATGAATTTCGGTAGCTACGCCACCCCCGGAATTGAAAGAACCTAAAGGAGCGCATGGGGCATATATTCCGCAGAACGTCGTTCTTGCAAAGGTTGTATATCTTTGCTTGCCTACTCAAGTCCAAACCATTAGGCCCCCTTACTTAGTGGTTCTAACCAAGGAGCACGCGGATCCAAAAAACGCATAGTCTCTCCCTCCCCCCAAAATGACTTCTACCGGCGGAGAACGCATTAGATATTTACCGAAACCAGTAGCAGTAGGTCCTTGATCCAACCTTAGCTCCAAGACGTTGGTCTCTAACTAGAAACGGAAATGCTTGAGCTTGAGAAGTGAGAAGCTTCGGGTCCAGCCGGCCCGTAAAACTCACTCGGATAAGTATTATTGAACCAGACAAAACAACAAGCAATAAAAGCCAAAACGGATAAAGCACCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAGGGCGAGCCCATGCAAACGGTTTAGTTAAGATATGCCAAATTCCTTCCCCCAAGTATACAAATGGAACCTAACCATACATGCCCCCCCAACCAACTATATCTTTCAAATCGTCCACACTAACAATCCATCCTTCTATCTCTCTCCCTCAAAAGGTTGAGTAAATAACCAAATATCACAGGCTAAGGGTCAAGTTGGTAATTTTTCTTACATCTCCTCCCCCCGGAGCCCAGGTATCATATACGCCTCCAAAATCAGGTAAGGAGCTTTGAATACTAGAAGAAAAGCAAGCACCTATACCTAACAAAATGAAGTGAATACCCCAACCAAATGGTAGTCATTTTCTTTCTATCTATCTTTCCACACATAACCGAAGAAGGGAAAAGATTCTTCAAGGGTCTCGGGTCCCAGAAGTGCATGATACATAGCGCCAAAACCCAATACTGCAGACGGAGGAAATTCAGTGAAGTACTCCAGACGGACACAAAGTACGGAAAGGTGTCTATAACTTCTCCACCATGACCTACGCCCCAACCTAGAGTAGAGTTAGAGTAGCTAGGTGGGGAAGTGAAGTCAAATTCATCCTTGTTCATGCATGGGCTTCTTTCTCAGGTACGAAATGAGCCACTTCGAATAGGTTCATTGCTCCGGCCTAGAATACGATTAATCAGGCATGGGCTAGATGAGCCCCCAGTAGTTTACCGGATAAATGGATAA

mRNA sequence

ATGCCAGGCGTGGTTATTGGCAAGAACTTATTGAATCCAGCGCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATCCCAAACAGAATGAGGATAATTGCACCCACACGTCTTCATCGACCGACGTTGTTTTTTCACCGGAAGACCGAGAGCTAACGATCGAGACTTTCTTTGGGCTATCTGGACACATACTGACTTATACTTCGGGAAATGCTACGCCACCCCCGGAATTGAAAGAACCTAAAGGAGCGCATGGGGCATATATTCCGCAGAACGTCGTTCTTGCAAAGGTACGAAATGAGCCACTTCGAATAGGTTCATTGCTCCGGCCTAGAATACGATTAATCAGGCATGGGCTAGATGAGCCCCCAGTAGTTTACCGGATAAATGGATAA

Coding sequence (CDS)

ATGCCAGGCGTGGTTATTGGCAAGAACTTATTGAATCCAGCGCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATCCCAAACAGAATGAGGATAATTGCACCCACACGTCTTCATCGACCGACGTTGTTTTTTCACCGGAAGACCGAGAGCTAACGATCGAGACTTTCTTTGGGCTATCTGGACACATACTGACTTATACTTCGGGAAATGCTACGCCACCCCCGGAATTGAAAGAACCTAAAGGAGCGCATGGGGCATATATTCCGCAGAACGTCGTTCTTGCAAAGGTACGAAATGAGCCACTTCGAATAGGTTCATTGCTCCGGCCTAGAATACGATTAATCAGGCATGGGCTAGATGAGCCCCCAGTAGTTTACCGGATAAATGGATAA

Protein sequence

MPGVVIGKNLLNPAHKKTTRLLYSSCVIYPSPIHSRMNYDRQELLLMELYSRDYNPKQNEDNCTHTSSSTDVVFSPEDRELTIETFFGLSGHILTYTSGNATPPPELKEPKGAHGAYIPQNVVLAKVRNEPLRIGSLLRPRIRLIRHGLDEPPVVYRING
Homology
[Close]
BLAST of CmaCh00G001300 vs. ExPASy TrEMBL
Match: A0A103WKT7 (Photosystem I PsaA/PsaB (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_025574 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 18 TTRLLYSSCVIYPSPIHSRMNYDRQELLLMELYSRDYNPKQNEDN 63
          +TRL YSSCVIY SPIH R++ DR        + RDYNP+QNEDN
Sbjct: 42 STRLYYSSCVIYSSPIHRRIHRDRSFAHGAIFFIRDYNPEQNEDN 86

[Close]
BLAST of CmaCh00G001300 vs. NCBI nr
Match: KVH74158.1 (Photosystem I PsaA/PsaB, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-04
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 18 TTRLLYSSCVIYPSPIHSRMNYDRQELLLMELYSRDYNPKQNEDN 63
          +TRL YSSCVIY SPIH R++ DR        + RDYNP+QNEDN
Sbjct: 42 STRLYYSSCVIYSSPIHRRIHRDRSFAHGAIFFIRDYNPEQNEDN 86

The following BLAST results are available for this feature:
BLAST of CmaCh00G001300 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A103WKT71.4e-0460.00Photosystem I PsaA/PsaB (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... [more]
BLAST of CmaCh00G001300 vs. NCBI nr
Match NameE-valueIdentityDescription
KVH74158.13.0e-0460.00Photosystem I PsaA/PsaB, partial [Cynara cardunculus var. scolymus][more]
BLAST of CmaCh00G001300 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001300.1CmaCh00G001300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity