CmaCh00G001280 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Location	Cma_Chr00: 7577009 .. 7580785 (-)
RNA-Seq Expression	CmaCh00G001280
Synteny	CmaCh00G001280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAACATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTTGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATCTCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACGTACTAAGGGGGATCTTTATATGGGAGGGGAGCTCTTCTTTTTCTATTCTTTCTTTCTGCCATATCTTTCATAGCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCGAATCTCGTCTCAATCATCATTTGTCATGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATGTCGCTATTCCTGCATCCAGGGGAGAATATGTTGGAAGAATTTCTTAGACGTATTGTAATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTGATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATAGGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTAAGAGACTTGAAAAATATAGTAAAAAGAAGCATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGCTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAGCTAGACATGATCGATCTTCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCCTACTCCCCTTCTAGTGGTTTCTTTTCTTATCATTTGGTATCATAGCTTAAGGCTCAAGATGGGATATATGTTTCCTTTGCATTTCTTTTCAATTTTTTTTTATCTTTTTAGTTTTTAATCGACCCAAAATAAAAAAAAAAAAATCAAATATGGGCTCTACTAGAAAATTTGAGAGGTGAGGATGAGAGATTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTATGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGATGAATCCTCTTGAAGAAGTGAAAAATGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGACGATGTGAAAAAAAGGTTGTCAAAATTATCAAAAGATGTTTCAATTCATGCCCCATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATACGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATGTTGTACGCGTAAGAAACTTGAAAAATATAGTAAAAAGAAACATTTGTGCTCTTCTGTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGGAAGTGTTCTTACCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTTCCCTTGTAGTGGTTCCTTTTCTTATCATATTGCCACATCCCTAAGGATTAGGACCACTTTAGCTGGGTCAGTGTAATCTTTATGCTCACCCGATTCAAATAATCATTGATTTGGTACTGCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTTTCTCTGGGATTCTCCATCCGCAAAGTTTCTAGCTGACTGATATGGCTCATCTTCATTTAGCTATTGCATTTCTTTTTCTTGTTGCTGGTCATATGTATAGATAGAACTAACTTCGGGGCTGGACAAAGTATAAAAGATCTTTTAGAAGCACATATTCGGGGGACGATTTGGGCGTGGACATAAAGTTATGACACAATCAATAATTCTCTTCATTTTCAATTAGGCCTTACTTTAGCCTCTTTAGGGGTTATTAGATTACATTACTGACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATACCAAACAGAATGAGGATAATGTAATGTATTGGCAAGAATGTTATAGACCATAAAGAAAAGAAGCTATCATATATATATCCCATTGAAGTTGGGCCAGCCTTTTTCTGGGGGGTTCCATACTTTGGGGCTTTAGGTTCGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAAGAAATCTTAATCGACACCCATATTTGCCCAATAGATTCAATCTGCTCATGGTCAAACTGAATATAGGTTCGATGTCCTTTTATCTTCAACAAGCGGCCTGACGTTCAATGCTGTTAAATAGTAATGCACTATTCTTCACAATAGGGCCCGAAGACTGATTGGTTCATCATGCTATTGCTTTAGGGTTACATATAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGGACATGGTTCCAAATGAATGCCGGATAAAAAGGATTTTGGTTATAGTTTTCCTTGGTCTGGGACGAGGTGGTACTTGTTATATTTCAGCTTGAGACACCTTTGGCCGTTTTCTGGATGTGAAATACCATTGGCTACTTTAGATTGGCACTGGAAGCACATCACATTGTGTATGGCAGGGTAACGTTTCCCAGTTTTATTCATCTTTCACTTACTTATTTGCTGGGATGGTTAAGAGATTCTTTATGGTTAAACTCTTCACAACTTCTCAATGGGATAATTAGAATTAATCCTTGTTGGTATGAATAGTTTATCAGTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGGTAA

mRNA sequence

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAACATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTTGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATCTCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCGAATCTCGTCTCAATCATCATTTGTCATGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATACCAAACAGAATGAGGATAATTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGGTAA

Coding sequence (CDS)

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAACATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTTGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATCTCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCGAATCTCGTCTCAATCATCATTTGTCATGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATACCAAACAGAATGAGGATAATTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGGTAA

Protein sequence

MKSCSCYSQPRALIEHCPRTCCRSNPSITLPSWWNCHNIGTLSLLSKNYCSRIMARRICIMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFASFAFRAISKNLSVYTSINLFHVAWQGNFEAWVQARPFPCKTYLQFWILGQPEKLLLEGVLPVNIAYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSIIICHDYSFGVSSLAWTGHFSHHKKTTRLLYSSCVIYPSPIHSRMNYDRQELLLMELYSRDYNTKQNEDNSGGADVLIWTSCLGYWISILNFLAGGYW

Homology

[Close]

BLAST of CmaCh00G001280 vs. ExPASy Swiss-Prot
Match: Q49KZ9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psaB PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.6e-33
Identity = 99/208 (47.60%), Postives = 112/208 (53.85%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWF 180

[Close]

BLAST of CmaCh00G001280 vs. ExPASy Swiss-Prot
Match: Q9MTN7 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Oenothera elata subsp. hookeri OX=85636 GN=psaB PE=3 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 3.6e-33
Identity = 99/208 (47.60%), Postives = 112/208 (53.85%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWF 180

[Close]

BLAST of CmaCh00G001280 vs. ExPASy Swiss-Prot
Match: Q06FW4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Pelargonium hortorum OX=4031 GN=psaB PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.6e-33
Identity = 99/208 (47.60%), Postives = 112/208 (53.85%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWF 180

[Close]

BLAST of CmaCh00G001280 vs. ExPASy Swiss-Prot
Match: Q09MH9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Citrus sinensis OX=2711 GN=psaB PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.7e-33
Identity = 99/208 (47.60%), Postives = 112/208 (53.85%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFSRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWF 180

[Close]

BLAST of CmaCh00G001280 vs. ExPASy Swiss-Prot
Match: Q332X9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lactuca sativa OX=4236 GN=psaB PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.7e-33
Identity = 98/208 (47.12%), Postives = 113/208 (54.33%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +         + + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLLISAISLIAGWLHLQPKWKPSVSWF 180

[Close]

BLAST of CmaCh00G001280 vs. ExPASy TrEMBL
Match: A0A4U5Q400 (Photosystem I OS=Populus alba OX=43335 GN=D5086_0000138770 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.3e-37
Identity = 105/190 (55.26%), Postives = 112/190 (58.95%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGV-------------------SFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVS 224
           AYSGV                    F L     S   VGYTYNRN   AFRG KMPNLVS
Sbjct: 121 AYSGVYQWWYTIGLRTNEDLYIGALFLLFLSAVSLLGVGYTYNRNGNLAFRGSKMPNLVS 180

[Close]

BLAST of CmaCh00G001280 vs. ExPASy TrEMBL
Match: A0A2G2X5T5 (Photosystem I OS=Capsicum baccatum OX=33114 GN=CQW23_07300 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-35
Identity = 105/204 (51.47%), Postives = 117/204 (57.35%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEE  Y ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAYDFESHDDITEEHFYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHV+WQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVSWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGV-------------------SFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVS 236
           AYSGV                    F L     S  +VGYTYNRN  RAF G K      
Sbjct: 121 AYSGVYQWWYTIGLRTNQDLYTGALFLLFLSAISLMQVGYTYNRNGNRAFPGSKN---AE 180

[Close]

BLAST of CmaCh00G001280 vs. ExPASy TrEMBL
Match: A0A3P6DSY0 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC179T45797Z PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-34
Identity = 105/203 (51.72%), Postives = 116/203 (57.14%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE W+Q     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFETWIQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGV-------------------SFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVS 236
           AYSGV                    F L     S   VGYTYN+N  + F G K  N  S
Sbjct: 121 AYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGVGYTYNQNGNQEFHGSK--NAES 180

[Close]

BLAST of CmaCh00G001280 vs. ExPASy TrEMBL
Match: A0A2G2ZQ37 (Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_12507 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-34
Identity = 109/231 (47.19%), Postives = 126/231 (54.55%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSIIICHDYSFGVSSLAWTGH 240
           AYSGV        Q  Y +G   N++    + G      +S I      FGVSSLAWTGH
Sbjct: 121 AYSGV-------YQWWYTIGLRTNQD---LYTGALFLLFLSAISLIAGLFGVSSLAWTGH 180

Query: 241 FSHHKKTTRLLYSSCVIYPSPIHSRMNYDRQELLLMELYSRDYNTKQNEDN 284
                                +H  +   R E      Y RDYN++QNEDN
Sbjct: 181 L--------------------VHVAIPASRGE------YVRDYNSEQNEDN 190

[Close]

BLAST of CmaCh00G001280 vs. ExPASy TrEMBL
Match: A0A2G3CGJ0 (Photosystem I chlorophyll a apoprotein A2 OS=Capsicum chinense OX=80379 GN=BC332_13539 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-32
Identity = 97/183 (53.01%), Postives = 110/183 (60.11%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSIIICHDYSFGVSSLAWTGH 236
           AYSGV        Q  Y +G   N++    + G      +S I      FGVSSLAWTGH
Sbjct: 121 AYSGV-------YQWWYTIGLRTNQD---LYTGALFLLFLSAISLIAGLFGVSSLAWTGH 168

[Close]

BLAST of CmaCh00G001280 vs. NCBI nr
Match: TKS04888.1 (hypothetical protein D5086_0000138770 [Populus alba])

HSP 1 Score: 165.6 bits (418), Expect = 6.7e-37
Identity = 105/190 (55.26%), Postives = 112/190 (58.95%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGV-------------------SFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVS 224
           AYSGV                    F L     S   VGYTYNRN   AFRG KMPNLVS
Sbjct: 121 AYSGVYQWWYTIGLRTNEDLYIGALFLLFLSAVSLLGVGYTYNRNGNLAFRGSKMPNLVS 180

[Close]

BLAST of CmaCh00G001280 vs. NCBI nr
Match: PHT52838.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum baccatum])

HSP 1 Score: 159.1 bits (401), Expect = 6.3e-35
Identity = 105/204 (51.47%), Postives = 117/204 (57.35%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEE  Y ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAYDFESHDDITEEHFYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHV+WQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVSWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGV-------------------SFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVS 236
           AYSGV                    F L     S  +VGYTYNRN  RAF G K      
Sbjct: 121 AYSGVYQWWYTIGLRTNQDLYTGALFLLFLSAISLMQVGYTYNRNGNRAFPGSKN---AE 180

[Close]

BLAST of CmaCh00G001280 vs. NCBI nr
Match: VDD26871.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 157.1 bits (396), Expect = 2.4e-34
Identity = 105/203 (51.72%), Postives = 116/203 (57.14%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE W+Q     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFETWIQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGV-------------------SFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVS 236
           AYSGV                    F L     S   VGYTYN+N  + F G K  N  S
Sbjct: 121 AYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGVGYTYNQNGNQEFHGSK--NAES 180

[Close]

BLAST of CmaCh00G001280 vs. NCBI nr
Match: PHT84064.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum])

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-34
Identity = 109/231 (47.19%), Postives = 126/231 (54.55%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSIIICHDYSFGVSSLAWTGH 240
           AYSGV        Q  Y +G   N++    + G      +S I      FGVSSLAWTGH
Sbjct: 121 AYSGV-------YQWWYTIGLRTNQD---LYTGALFLLFLSAISLIAGLFGVSSLAWTGH 180

Query: 241 FSHHKKTTRLLYSSCVIYPSPIHSRMNYDRQELLLMELYSRDYNTKQNEDN 284
                                +H  +   R E      Y RDYN++QNEDN
Sbjct: 181 L--------------------VHVAIPASRGE------YVRDYNSEQNEDN 190

[Close]

BLAST of CmaCh00G001280 vs. NCBI nr
Match: PHU17844.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum chinense])

HSP 1 Score: 150.2 bits (378), Expect = 2.9e-32
Identity = 97/183 (53.01%), Postives = 110/183 (60.11%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSIIICHDYSFGVSSLAWTGH 236
           AYSGV        Q  Y +G   N++    + G      +S I      FGVSSLAWTGH
Sbjct: 121 AYSGV-------YQWWYTIGLRTNQD---LYTGALFLLFLSAISLIAGLFGVSSLAWTGH 168

[Close]

BLAST of CmaCh00G001280 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-33
Identity = 98/208 (47.12%), Postives = 111/208 (53.37%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWF 180

The following BLAST results are available for this feature:

BLAST of CmaCh00G001280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KZ9	3.6e-33	47.60	Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. glo...	[more]
Q9MTN7	3.6e-33	47.60	Photosystem I P700 chlorophyll a apoprotein A2 OS=Oenothera elata subsp. hookeri...	[more]
Q06FW4	3.6e-33	47.60	Photosystem I P700 chlorophyll a apoprotein A2 OS=Pelargonium hortorum OX=4031 G...	[more]
Q09MH9	4.7e-33	47.60	Photosystem I P700 chlorophyll a apoprotein A2 OS=Citrus sinensis OX=2711 GN=psa...	[more]
Q332X9	4.7e-33	47.12	Photosystem I P700 chlorophyll a apoprotein A2 OS=Lactuca sativa OX=4236 GN=psaB...	[more]

BLAST of CmaCh00G001280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5Q400	3.3e-37	55.26	Photosystem I OS=Populus alba OX=43335 GN=D5086_0000138770 PE=3 SV=1	[more]
A0A2G2X5T5	3.0e-35	51.47	Photosystem I OS=Capsicum baccatum OX=33114 GN=CQW23_07300 PE=3 SV=1	[more]
A0A3P6DSY0	1.2e-34	51.72	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC179T45797Z PE=4 S...	[more]
A0A2G2ZQ37	1.5e-34	47.19	Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_125...	[more]
A0A2G3CGJ0	1.4e-32	53.01	Photosystem I chlorophyll a apoprotein A2 OS=Capsicum chinense OX=80379 GN=BC332...	[more]

BLAST of CmaCh00G001280 vs. NCBI nr


Match Name	E-value	Identity	Description
TKS04888.1	6.7e-37	55.26	hypothetical protein D5086_0000138770 [Populus alba]	[more]
PHT52838.1	6.3e-35	51.47	Photosystem I chlorophyll a apoprotein A2 [Capsicum baccatum]	[more]
VDD26871.1	2.4e-34	51.72	unnamed protein product [Brassica rapa]	[more]
PHT84064.1	3.1e-34	47.19	Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum]	[more]
PHU17844.1	2.9e-32	53.01	Photosystem I chlorophyll a apoprotein A2 [Capsicum chinense]	[more]

BLAST of CmaCh00G001280 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00340.1	1.3e-33	47.12	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 61..196 e-value: 1.7E-21 score: 77.9
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 65..255
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 68..195 e-value: 5.6E-17 score: 61.2
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 46..178
None	No IPR available	PANTHER	PTHR30128:SF63	PHOTOSYSTEM I CHLOROPHYLL A APOPROTEIN A2	coord: 46..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001280.1	CmaCh00G001280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0005488	binding