CmaCh00G001270 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II D2 protein
Location	Cma_Chr00: 7573527 .. 7573883 (+)
RNA-Seq Expression	CmaCh00G001270
Synteny	CmaCh00G001270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGATGCTTCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGGGGATGCTTTTTTCACTAAAGGTTGGTTACATTTATTTATGTTATTTGTACTAGTAACTGCTTTATGGCCGAGTGCTCTTGGAGTAGTTGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGAAATCCGTGTAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATACCTTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA

mRNA sequence

ATGGTGATGATGCTTCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGGGGATGCTTTTTTCACTAAAGTAACTGCTTTATGGCCGAGTGCTCTTGGAGTAGTTGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGAAATCCGTGTAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATACCTTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA

Coding sequence (CDS)

ATGGTGATGATGCTTCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGGGGATGCTTTTTTCACTAAAGTAACTGCTTTATGGCCGAGTGCTCTTGGAGTAGTTGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGAAATCCGTGTAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATACCTTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA

Protein sequence

MVMMLQIHSVLLTQLKLKEETYSMVTANRFWYQIFGDAFFTKVTALWPSALGVVGLALNLRAYDFGSQEIRVAREDPEFETFYTLLYPESSLNRRYSCLDGGSRSAS

Homology

[Close]

BLAST of CmaCh00G001270 vs. ExPASy Swiss-Prot
Match: Q06J67 (Photosystem II D2 protein OS=Bigelowiella natans OX=227086 GN=psbD PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 57/78 (73.08%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 18  KEETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFG 77
           +EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF 
Sbjct: 240 QEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 299

Query: 78  SQEIRVAREDPEFETFYT 85
           SQEIR A EDPEFETFYT
Sbjct: 300 SQEIRAA-EDPEFETFYT 316

[Close]

BLAST of CmaCh00G001270 vs. ExPASy Swiss-Prot
Match: Q4FFP4 (Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-21
Identity = 57/77 (74.03%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRVAREDPEFETFYT 85
           QEIR A EDPEFETFYT
Sbjct: 302 QEIRAA-EDPEFETFYT 317

[Close]

BLAST of CmaCh00G001270 vs. ExPASy Swiss-Prot
Match: Q3V539 (Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-21
Identity = 57/77 (74.03%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRVAREDPEFETFYT 85
           QEIR A EDPEFETFYT
Sbjct: 302 QEIRAA-EDPEFETFYT 317

[Close]

BLAST of CmaCh00G001270 vs. ExPASy Swiss-Prot
Match: A4QJB0 (Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-21
Identity = 57/77 (74.03%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRVAREDPEFETFYT 85
           QEIR A EDPEFETFYT
Sbjct: 302 QEIRAA-EDPEFETFYT 317

[Close]

BLAST of CmaCh00G001270 vs. ExPASy Swiss-Prot
Match: A4QJJ4 (Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-21
Identity = 57/77 (74.03%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRVAREDPEFETFYT 85
           QEIR A EDPEFETFYT
Sbjct: 302 QEIRAA-EDPEFETFYT 317

[Close]

BLAST of CmaCh00G001270 vs. ExPASy TrEMBL
Match: A0A649X4Q6 (Photosystem II D2 protein OS=Erythrostemon gilliesii OX=191891 GN=psbD PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26
Identity = 73/100 (73.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRVAREDPEFETFYTLLYPESSLNRRYSCLDGGSRSAS 108
           QEIR A EDPEFETFYT    + SL RRYSCLDGGSRSAS
Sbjct: 302 QEIRAA-EDPEFETFYT--XXKYSLKRRYSCLDGGSRSAS 338

[Close]

BLAST of CmaCh00G001270 vs. ExPASy TrEMBL
Match: A0A3P6DWI1 (Photosystem II D2 protein OS=Brassica campestris OX=3711 GN=BRASC143T45684Z PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.9e-25
Identity = 72/100 (72.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRVAREDPEFETFYTLLYPESSLNRRYSCLDGGSRSAS 108
           QEIR A EDPEFETFYT  Y   S  RRYS LDGGSRSAS
Sbjct: 302 QEIRAA-EDPEFETFYTKKY---SFKRRYSRLDGGSRSAS 337

[Close]

BLAST of CmaCh00G001270 vs. ExPASy TrEMBL
Match: A0A7J6HLV4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019793 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.3e-21
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAFFTKVTALWPSALGVVGLALNLRAYDFGSQEIRVAREDPE 78
           EETYSMVTANRFW QIFG AF  K+T+LW SALGVVGLALNLRAYDF SQEIR A EDPE
Sbjct: 43  EETYSMVTANRFWSQIFGVAFSNKLTSLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPE 102

Query: 79  FETFYT 85
           FETFYT
Sbjct: 103 FETFYT 107

[Close]

BLAST of CmaCh00G001270 vs. ExPASy TrEMBL
Match: A0A5H2XW92 (Photosystem II D2 protein OS=Prunus dulcis OX=3755 GN=Prudu_1368S000100 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.5e-21
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAFFTKVTALWPSALGVVGLALNLRAYDFGSQEIRVAREDPE 78
           EETYSMVTANRFW QIFG AF  K+T LW SALGVVGLALNLRAYDF SQEIR A EDPE
Sbjct: 193 EETYSMVTANRFWSQIFGVAFSNKLTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPE 252

Query: 79  FETFYT 85
           FETFYT
Sbjct: 253 FETFYT 257

[Close]

BLAST of CmaCh00G001270 vs. ExPASy TrEMBL
Match: A0A4Y7L596 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_042176 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-19
Identity = 57/80 (71.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 152 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 211

Query: 79  QEIRVAREDPEFETFYTLLY 88
           QEIR A EDPEFETFYT ++
Sbjct: 212 QEIRAA-EDPEFETFYTKIF 230

[Close]

BLAST of CmaCh00G001270 vs. NCBI nr
Match: YP_009715474.1 (photosystem II protein D2 [Erythrostemon gilliesii] >QGL08586.1 photosystem II protein D2 [Erythrostemon gilliesii])

HSP 1 Score: 127.5 bits (319), Expect = 7.0e-26
Identity = 73/100 (73.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRVAREDPEFETFYTLLYPESSLNRRYSCLDGGSRSAS 108
           QEIR A EDPEFETFYT    + SL RRYSCLDGGSRSAS
Sbjct: 302 QEIRAA-EDPEFETFYT--XXKYSLKRRYSCLDGGSRSAS 338

[Close]

BLAST of CmaCh00G001270 vs. NCBI nr
Match: VDD26425.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 72/100 (72.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRVAREDPEFETFYTLLYPESSLNRRYSCLDGGSRSAS 108
           QEIR A EDPEFETFYT  Y   S  RRYS LDGGSRSAS
Sbjct: 302 QEIRAA-EDPEFETFYTKKY---SFKRRYSRLDGGSRSAS 337

[Close]

BLAST of CmaCh00G001270 vs. NCBI nr
Match: KAF4396247.1 (hypothetical protein F8388_019793 [Cannabis sativa])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAFFTKVTALWPSALGVVGLALNLRAYDFGSQEIRVAREDPE 78
           EETYSMVTANRFW QIFG AF  K+T+LW SALGVVGLALNLRAYDF SQEIR A EDPE
Sbjct: 43  EETYSMVTANRFWSQIFGVAFSNKLTSLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPE 102

Query: 79  FETFYT 85
           FETFYT
Sbjct: 103 FETFYT 107

[Close]

BLAST of CmaCh00G001270 vs. NCBI nr
Match: TKY66322.1 (Photosystem II D2 protein [Spatholobus suberectus])

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAFFTKVTALWPSALGVVGLALNLRAYDFGSQEIRVAREDPE 78
           EETYSMVTANRFW QIFG AF  K+T LW SALGVVGLALNLRAYDF SQEIR A EDPE
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKLTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPE 301

Query: 79  FETFYT 85
           FETFYT
Sbjct: 302 FETFYT 306

[Close]

BLAST of CmaCh00G001270 vs. NCBI nr
Match: BBN70045.1 (hypothetical protein Prudu_1368S000100 [Prunus dulcis])

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAFFTKVTALWPSALGVVGLALNLRAYDFGSQEIRVAREDPE 78
           EETYSMVTANRFW QIFG AF  K+T LW SALGVVGLALNLRAYDF SQEIR A EDPE
Sbjct: 193 EETYSMVTANRFWSQIFGVAFSNKLTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPE 252

Query: 79  FETFYT 85
           FETFYT
Sbjct: 253 FETFYT 257

[Close]

BLAST of CmaCh00G001270 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-22
Identity = 57/77 (74.03%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 19  EETYSMVTANRFWYQIFGDAF-----------FTKVTALWPSALGVVGLALNLRAYDFGS 78
           EETYSMVTANRFW QIFG AF           F  VT LW SALGVVGLALNLRAYDF S
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRVAREDPEFETFYT 85
           QEIR A EDPEFETFYT
Sbjct: 302 QEIRAA-EDPEFETFYT 317

The following BLAST results are available for this feature:

BLAST of CmaCh00G001270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06J67	1.4e-21	73.08	Photosystem II D2 protein OS=Bigelowiella natans OX=227086 GN=psbD PE=3 SV=1	[more]
Q4FFP4	2.4e-21	74.03	Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1	[more]
Q3V539	2.4e-21	74.03	Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1	[more]
A4QJB0	2.4e-21	74.03	Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1	[more]
A4QJJ4	2.4e-21	74.03	Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1	[more]

BLAST of CmaCh00G001270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A649X4Q6	3.4e-26	73.00	Photosystem II D2 protein OS=Erythrostemon gilliesii OX=191891 GN=psbD PE=3 SV=1	[more]
A0A3P6DWI1	4.9e-25	72.00	Photosystem II D2 protein OS=Brassica campestris OX=3711 GN=BRASC143T45684Z PE=3...	[more]
A0A7J6HLV4	7.3e-21	84.85	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019793 PE=3 SV=1	[more]
A0A5H2XW92	9.5e-21	84.85	Photosystem II D2 protein OS=Prunus dulcis OX=3755 GN=Prudu_1368S000100 PE=3 SV=...	[more]
A0A4Y7L596	3.1e-19	71.25	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_042176 PE=3 SV=1	[more]

BLAST of CmaCh00G001270 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009715474.1	7.0e-26	73.00	photosystem II protein D2 [Erythrostemon gilliesii] >QGL08586.1 photosystem II p...	[more]
VDD26425.1	1.0e-24	72.00	unnamed protein product [Brassica rapa]	[more]
KAF4396247.1	1.5e-20	84.85	hypothetical protein F8388_019793 [Cannabis sativa]	[more]
TKY66322.1	2.0e-20	84.85	Photosystem II D2 protein [Spatholobus suberectus]	[more]
BBN70045.1	2.0e-20	84.85	hypothetical protein Prudu_1368S000100 [Prunus dulcis]	[more]

BLAST of CmaCh00G001270 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00270.1	1.7e-22	74.03	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 18..88
None	No IPR available	PANTHER	PTHR33149:SF7	PHOTOSYSTEM II D2 PROTEIN	coord: 18..88
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 17..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001270.1	CmaCh00G001270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0042170	plastid membrane
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0010242	oxygen evolving activity