CmaCh00G001180 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G001180
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptioncucumber peeling cupredoxin-like
LocationCma_Chr00: 5308055 .. 5308911 (+)
RNA-Seq ExpressionCmaCh00G001180
SyntenyCmaCh00G001180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACGAGATCAACACAGCGCCATGCCCACTCCGAATAACCTAGCAGCGCTTTTGACGGCGGCATTTATTGTCACCACCGCGGCGCCCTTTGCCGGAGCGGAGACGCACCACGTCGTCGGCGGCGACAGGGGATGGGACGTGGATTCGAACATTGCGTCTTGGTCGGCCGGTAGAATATTCAGAGTCGGAGATAAGATCTGTAAGATCCATTGGTTTGCTTTTTTCCTTTTTCGTTTTGTTTTTAATGCGTTTTCTTTTTGTGTGAGAAATTTTGTTTTGGGATTCCCGGAAAATGGGAATCGGAACCGGGTTTATTAATAGTAAAAATATGAAATAAAAGAGTAATGTTGGGGGTAGGGTTCGCGTACTCTGTGGCACACGGTAATGTGGTGGAGCTGGAAAGGAAGGAGGAATTCAAAGCGTGCGATGTAAGCAGGTTCATCAGGGAGTATAGGGACGGCATAGATATCGTCGCCTTGAACGGAGAGGGAATCCGTTACTTCGCGAGTAGCAGAGCAGAGAGGTGCAGGAAGGGCCTCAAACTGCAGGTGCATGTGGAGGCCCAACAACAGAAGGCGGGGACGACAGGAGTTGGGTCAAGGAACGACATGTCGGAGGGGGATGGTGAGTCAGCAGCAGTTCCACCATCCCCTTCCACGTCTTCAACGCCCTTCGCCATTTCTTATCTCACTCTCTCCCTCTTGCTGGCTGGCCTTGCCTTTACCTATTGGATCAGCTAAGCCCTCTTTTTTTTTTTTTTTTTTTTTTTATTTTGTTTAATTATGTAACCAATTTGATTTNGATTGAGATTATTAAAGCTTCAGACATATAATAATATTCCATATAATAATCATGCGC

mRNA sequence

CACGAGATCAACACAGCGCCATGCCCACTCCGAATAACCTAGCAGCGCTTTTGACGGCGGCATTTATTGTCACCACCGCGGCGCCCTTTGCCGGAGCGGAGACGCACCACGTCGTCGGCGGCGACAGGGGATGGGACGTGGATTCGAACATTGCGTCTTGGTCGGCCGGTAGAATATTCAGAGTCGGAGATAAGATCTGGTTCGCGTACTCTGTGGCACACGGTAATGTGGTGGAGCTGGAAAGGAAGGAGGAATTCAAAGCGTGCGATGTAAGCAGGTTCATCAGGGAGTATAGGGACGGCATAGATATCGTCGCCTTGAACGGAGAGGGAATCCGTTACTTCGCGAGTAGCAGAGCAGAGAGGTGCAGGAAGGGCCTCAAACTGCAGGTGCATGTGGAGGCCCAACAACAGAAGGCGGGGACGACAGGAGTTGGGTCAAGGAACGACATGTCGGAGGGGGATGGTGAGTCAGCAGCAGTTCCACCATCCCCTTCCACGTCTTCAACGCCCTTCGCCATTTCTTATCTCACTCTCTCCCTCTTGCTGGCTGGCCTTGCCTTTACCTATTGGATCAGCTAAGCCCTCTTTTTTTTTTTTTTTTTTTTTTTATTTTGTTTAATTATGTAACCAATTTGATTTNGATTGAGATTATTAAAGCTTCAGACATATAATAATATTCCATATAATAATCATGCGC

Coding sequence (CDS)

ATGCCCACTCCGAATAACCTAGCAGCGCTTTTGACGGCGGCATTTATTGTCACCACCGCGGCGCCCTTTGCCGGAGCGGAGACGCACCACGTCGTCGGCGGCGACAGGGGATGGGACGTGGATTCGAACATTGCGTCTTGGTCGGCCGGTAGAATATTCAGAGTCGGAGATAAGATCTGGTTCGCGTACTCTGTGGCACACGGTAATGTGGTGGAGCTGGAAAGGAAGGAGGAATTCAAAGCGTGCGATGTAAGCAGGTTCATCAGGGAGTATAGGGACGGCATAGATATCGTCGCCTTGAACGGAGAGGGAATCCGTTACTTCGCGAGTAGCAGAGCAGAGAGGTGCAGGAAGGGCCTCAAACTGCAGGTGCATGTGGAGGCCCAACAACAGAAGGCGGGGACGACAGGAGTTGGGTCAAGGAACGACATGTCGGAGGGGGATGGTGAGTCAGCAGCAGTTCCACCATCCCCTTCCACGTCTTCAACGCCCTTCGCCATTTCTTATCTCACTCTCTCCCTCTTGCTGGCTGGCCTTGCCTTTACCTATTGGATCAGCTAA

Protein sequence

MPTPNNLAALLTAAFIVTTAAPFAGAETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKIWFAYSVAHGNVVELERKEEFKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCRKGLKLQVHVEAQQQKAGTTGVGSRNDMSEGDGESAAVPPSPSTSSTPFAISYLTLSLLLAGLAFTYWIS
Homology
BLAST of CmaCh00G001180 vs. ExPASy Swiss-Prot
Match: G7L0H3 (Blue copper protein 1a OS=Medicago truncatula OX=3880 GN=MTR_7g086140 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-09
Identity = 36/126 (28.57%), Postives = 65/126 (51.59%), Query Frame = 0

Query: 5   NNLAALLTAAFIVTTAAPFAGAETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKIWFAYS 64
           + +  +L+ + ++ ++   A   T H+VG D+GW VD +   W+  ++FRVGD + F Y 
Sbjct: 4   SRVVLILSISMVLLSSVAIA---TDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYD 63

Query: 65  VAHGNVVELERKEEFKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERC-RKGLKLQ 124
            A  NV ++     F++C           G DI+ L  EG +++    A+ C  + +KL 
Sbjct: 64  PARHNVFKV-NGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLV 123

Query: 125 VHVEAQ 130
           + V A+
Sbjct: 124 ITVLAE 125

BLAST of CmaCh00G001180 vs. ExPASy Swiss-Prot
Match: P29602 (Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3)

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-09
Identity = 44/136 (32.35%), Postives = 62/136 (45.59%), Query Frame = 0

Query: 28  THHVVGGDRGWDVDSN---IASWSAGRIFRVGDKIWFAYSVAHGNVVELERKEEFKACDV 87
           T H+VG + GW V S+    + W+AG+ FRVGD + F +     NV E+E K+ F AC+ 
Sbjct: 3   TVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNF 62

Query: 88  SRFIREY-RDGIDIVALNGEGIRYFASSRAERCRKGLKLQVHVEAQQQKAGTTGVGSRND 147
                +  R    I  L+  G+ YF  +    C  G KL ++V A           S + 
Sbjct: 63  VNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPPPSS-SP 122

Query: 148 MSEGDGESAAVPPSPS 160
            S         PPSPS
Sbjct: 123 PSSVMPPPVMPPPSPS 137

BLAST of CmaCh00G001180 vs. ExPASy Swiss-Prot
Match: A0A072U307 (Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 33/105 (31.43%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 26  AETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKIWFAYSVAHGNVVELERKEEFKACDVS 85
           A T ++VG D+GW VD +   W+  ++FRVGD + F Y  +  NV ++     F++C   
Sbjct: 23  AATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHNVFKV-NGTLFQSCTFP 82

Query: 86  RFIREYRDGIDIVALNGEGIRYFASSRAERC-RKGLKLQVHVEAQ 130
                   G DI+ L  EG +++    A+ C  + +KL + V A+
Sbjct: 83  PKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAE 126

BLAST of CmaCh00G001180 vs. ExPASy Swiss-Prot
Match: Q9T076 (Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 48/163 (29.45%), Postives = 73/163 (44.79%), Query Frame = 0

Query: 11  LTAAFIVTTAAPFAGAETHHVVGGDRGW--DVDSNIASWSAGRIFRVGDKIWFAYSVAHG 70
           L+  F ++ A  F        VGG   W  +   N  SWS    F V D ++F+Y+    
Sbjct: 19  LSTLFTISNARKFN-------VGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGAD 78

Query: 71  NVVELERKEEFKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCRKGLKLQVHV-- 130
           +V+E+  K ++ AC+    I+   DG   ++L+  G  YF S   + C+KG KL V V  
Sbjct: 79  SVLEV-NKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVVIS 138

Query: 131 -----EAQQQKAGTTGVGSRNDMSEGDG---ESAAVPPSPSTS 162
                 AQ   A   G  +   M+   G     ++ P SP+TS
Sbjct: 139 ARIPSTAQSPHAAAPGSSTPGSMTPPGGAHSPKSSSPVSPTTS 173

BLAST of CmaCh00G001180 vs. TAIR 10
Match: AT2G26720.1 (Cupredoxin superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-15
Identity = 41/123 (33.33%), Postives = 69/123 (56.10%), Query Frame = 0

Query: 5   NNLAALLTAAFIVTTAAPFAGAETHHVVGGDRGWD-VDSNIASWSAGRIFRVGDKIWFAY 64
           NN+    T+  I  T    A   T H VG  +GW  +  +  +W++ R+F+VGD + FAY
Sbjct: 6   NNI--FFTSLLIFVTLFGVAVGGTVHKVGNTKGWTMIGGDYEAWASSRVFQVGDTLVFAY 65

Query: 65  SVAHGNVVELERKEEFKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCRKGLKLQ 124
           +  + +V E+    +F+ C+ S+ +R Y+ G D ++L   G+++F       C+KG KLQ
Sbjct: 66  NKDYHDVTEVTH-NDFEMCESSKPLRRYKTGSDSISLTKPGLQHFICGVPGHCKKGQKLQ 125

Query: 125 VHV 127
           +HV
Sbjct: 126 IHV 125

BLAST of CmaCh00G001180 vs. TAIR 10
Match: AT5G07475.1 (Cupredoxin superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 0

Query: 28  THHVVGGDRGWDVDSNIASWSAGRIFRVGDKIWFAYSVAHGNVVELERKEEFKACDVSRF 87
           T + VG   GWD+ S++ SW++G+ F  GD + F YS  H +V E+  K+ ++ C+ +  
Sbjct: 28  TTYFVGDSSGWDISSDLESWTSGKRFSPGDVLMFQYSSTH-SVYEV-AKDNYQNCNTTDA 87

Query: 88  IREYRDGIDIVALNGEGIRYFASSRAERCRKGLKLQVHVEAQ--------QQKAGTTGV- 147
           IR + +G   VAL+  G R+F       C  G++L V+VE            +A T+G+ 
Sbjct: 88  IRTFTNGNTTVALSKPGNRFFVCGNRLHCFAGMRLLVNVEGNGPSQAPVGSPQAATSGIL 147

Query: 148 ---GSRNDMSEGDGESAA 154
                +N+ + G   SAA
Sbjct: 148 QPSSKKNNPATGVASSAA 163

BLAST of CmaCh00G001180 vs. TAIR 10
Match: AT3G53330.1 (plastocyanin-like domain-containing protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 0

Query: 32  VGGDRGWDV--DSNIASWSAGRIFRVGDKIWFAYSVAHGNVVELERKEEFKACDVSRFIR 91
           VG   GW V        WS G+ F V D ++F Y+    +V E+  + EF++C+ +  + 
Sbjct: 190 VGDYGGWSVYYSYYYYKWSEGKQFHVEDTLFFQYNKELNDVREITDELEFRSCESTSTVA 249

Query: 92  EYRDGIDIVALNGEGIRYFASSRAERCRKGLKLQVHVE 128
            Y+ G D++ L   G+ YF S +   C+ G+KL+V V+
Sbjct: 250 VYKTGHDLIKLTKPGVHYFVSLKTGLCQAGIKLRVTVQ 287

BLAST of CmaCh00G001180 vs. TAIR 10
Match: AT4G27520.1 (early nodulin-like protein 2 )

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-09
Identity = 48/163 (29.45%), Postives = 73/163 (44.79%), Query Frame = 0

Query: 11  LTAAFIVTTAAPFAGAETHHVVGGDRGW--DVDSNIASWSAGRIFRVGDKIWFAYSVAHG 70
           L+  F ++ A  F        VGG   W  +   N  SWS    F V D ++F+Y+    
Sbjct: 19  LSTLFTISNARKFN-------VGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGAD 78

Query: 71  NVVELERKEEFKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCRKGLKLQVHV-- 130
           +V+E+  K ++ AC+    I+   DG   ++L+  G  YF S   + C+KG KL V V  
Sbjct: 79  SVLEV-NKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVVIS 138

Query: 131 -----EAQQQKAGTTGVGSRNDMSEGDG---ESAAVPPSPSTS 162
                 AQ   A   G  +   M+   G     ++ P SP+TS
Sbjct: 139 ARIPSTAQSPHAAAPGSSTPGSMTPPGGAHSPKSSSPVSPTTS 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
G7L0H33.7e-0928.57Blue copper protein 1a OS=Medicago truncatula OX=3880 GN=MTR_7g086140 PE=2 SV=1[more]
P296028.2e-0932.35Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3[more]
A0A072U3071.1e-0831.43Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1[more]
Q9T0761.2e-0729.45Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 S... [more]
Match NameE-valueIdentityDescription
AT2G26720.14.6e-1533.33Cupredoxin superfamily protein [more]
AT5G07475.11.6e-1231.88Cupredoxin superfamily protein [more]
AT3G53330.11.2e-1032.65plastocyanin-like domain-containing protein [more]
AT4G27520.18.4e-0929.45early nodulin-like protein 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008972CupredoxinGENE3D2.60.40.420coord: 28..139
e-value: 7.0E-24
score: 86.1
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 28..126
IPR003245Phytocyanin domainPFAMPF02298Cu_bind_likecoord: 40..119
e-value: 7.2E-17
score: 61.2
IPR003245Phytocyanin domainPROSITEPS51485PHYTOCYANINcoord: 28..128
score: 28.671
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..160
NoneNo IPR availablePANTHERPTHR33021:SF31OS02G0720100 PROTEINcoord: 9..172
NoneNo IPR availableCDDcd04216Phytocyanincoord: 28..126
e-value: 5.50383E-36
score: 119.287
IPR039391PhytocyaninPANTHERPTHR33021BLUE COPPER PROTEINcoord: 9..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001180.1CmaCh00G001180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
cellular_component GO:0046658 anchored component of plasma membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0009055 electron transfer activity