CmaCh00G001130 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001130
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribulose bisphosphate carboxylase large chain
Location	Cma_Chr00: 4870174 .. 4871648 (-)
RNA-Seq Expression	CmaCh00G001130
Synteny	CmaCh00G001130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCAAAGATACTGAGATCTTGGCAGGCAGCATTCCGAGTAACTCCTCCACCGGGAGTTCCAAGGAAGTAGGGGCCCCTATAGCTGCTGAATCTTTTACTGGTACATGGACAACTGACCGATGGGCTTACCAACCAGTCTTGATCCTTACAAAGGACGATGCTATGGAATTATGGAATCGAGCCTCTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTGACTTCCATTGTGGTTAATGTATGTGGATTCAAGGCTCTGCGTGCTCTACGTCTGTTTGCGAATCCCTACAGCTTATATTCAAACTTTCCAAGGCCTGCCTCATGGTATCCAGGTTGAAAGAAAGAAATTGAAGAAGTATGGTCGCGCTCTATTGGGATGTACTATGTAAACCAAAATGGGGATTATCCGCTAAGAATTATTGTAGAGTCGTTTATGAGTGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAAGGTTCATTCCCAACCATTTATGCATTGTAGAGACCGTTTCCTATTTTGTGCGAAATTTCTCAATCACAGGCTAAAGTAAAATCAAGGGACAATACTTGAATGCTACTGTGCGGGTACATGCGAAGAAATGGCTTTGCTCGAGAATTGGGAGTTATTCTTTCACGAACTGTAAACAAAGAGAAATACTCCTTATTCATGAGAGTGAACTCCGGAACCTTCTTGAACTCGGGTTTCACTATTTTACGGTCTCTTCTCTTTTCTTTCCTTTGATTCTGCTTTCAAGACTCTTCAAATTCAAGATTCATTCCCCTTCACTTCTATTCCCTTCTGTTATGGTGAGTTATTCTTGTTAACAGGTGGATTCACTACAAATACTAGCTTGGCTCATTCATTATTGCCGAGATAATTGTCTACTTCTTCACAGTCACCGTGCAATGCATGTCGTTATTCATAGAAGAATCATGATATGCGCTTCCCTTCCGTGTACTAGCTAAAGCGTTACGCCTGTTTGGTGGAGACCATATTCACGCTGGTATCGTAGTAGGTAAACTTGAAGAATGGGAAAGAGACATTTAGGTTTTGTTGATTTAGTGATGATTTTGTTGAAAAAGATTGAACGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGCCAGTGGCTTCCGGTGGTATTCACGTTTGGCATATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGTCGTGATCTTGCTCGTGAGGGTAGGTAATGAAATTATCCGTGAGGCTAGTAATTGGAGTCCTGAACTAGCTACTGCTTGTGAAGTATGGAAGACGATCAAATTCTAA

mRNA sequence

ATGAAACCAAAGATACTGAGATCTTGGCAGGCAGCATTCCGAGTAACTCCTCCACCGGGAGTTCCAAGGAAAAGTATGGTCGCGCTCTATTGGGATGTACTATGTAAACCAAAATGGGGATTATCCGCTAAGAATTATTGTAGAGTCGTTTATGAGTGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAAGGTTCATTCCCAACCATTTATGCATTGTAGAGACCGTTTCCTATTTTGTGCGAAATTTCTCAATCACAGGCTAAAATTGAACGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGCCAGTGGCTTCCGGTGGTATTCACGTTTGGCATATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGTCGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAGGCTAGTAATTGGAGTCCTGAACTAGCTACTGCTTGTGAAGTATGGAAGACGATCAAATTCTAA

Coding sequence (CDS)

ATGAAACCAAAGATACTGAGATCTTGGCAGGCAGCATTCCGAGTAACTCCTCCACCGGGAGTTCCAAGGAAAAGTATGGTCGCGCTCTATTGGGATGTACTATGTAAACCAAAATGGGGATTATCCGCTAAGAATTATTGTAGAGTCGTTTATGAGTGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAAGGTTCATTCCCAACCATTTATGCATTGTAGAGACCGTTTCCTATTTTGTGCGAAATTTCTCAATCACAGGCTAAAATTGAACGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGCCAGTGGCTTCCGGTGGTATTCACGTTTGGCATATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGTCGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAGGCTAGTAATTGGAGTCCTGAACTAGCTACTGCTTGTGAAGTATGGAAGACGATCAAATTCTAA

Protein sequence

MKPKILRSWQAAFRVTPPPGVPRKSMVALYWDVLCKPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFLNHRLKLNGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGAGGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASNWSPELATACEVWKTIKF

Homology

[Close]

BLAST of CmaCh00G001130 vs. ExPASy Swiss-Prot
Match: O63094 (Ribulose bisphosphate carboxylase large chain OS=Cajanus cajan OX=3821 GN=rbcL PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.9e-53
Identity = 132/298 (44.30%), Postives = 138/298 (46.31%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKAQAETGE 234

Query: 96  ------------------------------------------------------------ 155
                                                                       
Sbjct: 235 IKGHYLNATAGTCEEMIKRAVFARELGVPIIMHDYLTGGFTANTSLAHYCRDNGLLLHIH 294

Query: 156 -----------NHRL--------------------------------------------- 200
                      NH +                                             
Sbjct: 295 RAMHAVIDRQKNHGMHFRVLAKALRLSGGDHVHSGTVVGKLEGEREITLGFVDLLRDDFV 354

[Close]

BLAST of CmaCh00G001130 vs. ExPASy Swiss-Prot
Match: Q31738 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Brexia madagascariensis OX=39394 GN=rbcL PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-52
Identity = 132/298 (44.30%), Postives = 138/298 (46.31%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGE 234

Query: 96  ------------------------------------------------------------ 155
                                                                       
Sbjct: 235 IKGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIH 294

Query: 156 -----------NHRL--------------------------------------------- 200
                      NH +                                             
Sbjct: 295 RAMHAVIDRQKNHGMHFRVLAKALRMSGGDHVHAGTVVGKLEGERDITLGFVDLLRDDFI 354

[Close]

BLAST of CmaCh00G001130 vs. ExPASy Swiss-Prot
Match: O20346 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Clitoria ternatea OX=43366 GN=rbcL PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-52
Identity = 135/298 (45.30%), Postives = 142/298 (47.65%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK----------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+           
Sbjct: 165 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGE 224

Query: 96  ----FLN----------------------------------------------------H 155
               +LN                                                    H
Sbjct: 225 IKGHYLNATAGTCEEMIKRAVCARELGAPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIH 284

Query: 156 R----------------------LKLN--------------------------------- 200
           R                      L+L+                                 
Sbjct: 285 RAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGEREITLGFVDLLRDDFV 344

[Close]

BLAST of CmaCh00G001130 vs. ExPASy Swiss-Prot
Match: Q31983 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus florida OX=4283 GN=rbcL PE=3 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-52
Identity = 132/298 (44.30%), Postives = 138/298 (46.31%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 165 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGE 224

Query: 96  ------------------------------------------------------------ 155
                                                                       
Sbjct: 225 IKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIH 284

Query: 156 -----------NHRL--------------------------------------------- 200
                      NH +                                             
Sbjct: 285 RAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLLRDDFV 344

[Close]

BLAST of CmaCh00G001130 vs. ExPASy Swiss-Prot
Match: P48697 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo OX=3663 GN=rbcL PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-52
Identity = 135/298 (45.30%), Postives = 142/298 (47.65%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK----------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+           
Sbjct: 166 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGE 225

Query: 96  ----FLN----------------------------------------------------H 155
               +LN                                                    H
Sbjct: 226 IKGHYLNATAGTCEEMMKRAIFARELGAPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIH 285

Query: 156 R----------------------LKLN--------------------------------- 200
           R                      L+L+                                 
Sbjct: 286 RAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFV 345

[Close]

BLAST of CmaCh00G001130 vs. ExPASy TrEMBL
Match: A0A6A1W2I4 (Ribulose bisphosphate carboxylase large chain OS=Morella rubra OX=262757 GN=CJ030_MR3G018692 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.0e-56
Identity = 132/243 (54.32%), Postives = 138/243 (56.79%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 182 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGE 241

Query: 96  ----------------NHRL---------------------------------------- 155
                           NH +                                        
Sbjct: 242 IKGHYLNATAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLL 301

Query: 156 --------KLNGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGA 200
                   +  GIYFTQDWVSLPGVLPVASGGIHVWHMPALTE+     +       FG 
Sbjct: 302 RDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEI-----FGDDSVLQFGG 361

[Close]

BLAST of CmaCh00G001130 vs. ExPASy TrEMBL
Match: M8A2T1 (Ribulose bisphosphate carboxylase large chain OS=Triticum urartu OX=4572 GN=TRIUR3_00065 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 9.9e-56
Identity = 130/243 (53.50%), Postives = 138/243 (56.79%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQSETGE 234

Query: 96  ----------------NHRL---------------------------------------- 155
                           NH +                                        
Sbjct: 235 IKGHYLNATAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLL 294

Query: 156 --------KLNGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGA 200
                   +  GI+FTQDWVSLPGVLPVASGGIHVWHMPALTE+     +       FG 
Sbjct: 295 RDDFVEKDRSRGIFFTQDWVSLPGVLPVASGGIHVWHMPALTEI-----FGDDSVLQFGG 354

[Close]

BLAST of CmaCh00G001130 vs. ExPASy TrEMBL
Match: A0A2G2W5E2 (Ribulose bisphosphate carboxylase large chain OS=Capsicum baccatum OX=33114 GN=CQW23_19292 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.5e-53
Identity = 123/223 (55.16%), Postives = 131/223 (58.74%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 95
           KPK  LSAKNY RVVYECL GGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 60  KPKLVLSAKNYGRVVYECLYGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKAQTETGE 119

Query: 96  --NHRL-----------------------------------------------KLNGIYF 155
              H L                                               +  GIYF
Sbjct: 120 IKGHYLNATAAKALRMSCGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEQDRSRGIYF 179

Query: 156 TQDWVSLPGVLPVASGGIHVWHMPALTEMEMIPYYTPIRRRNFG-AGGNAPGAVANRVAL 200
           TQDWVSLPGVLPVASGGIHVWHMPALTE+              G   GNAPGA+ANRV+L
Sbjct: 180 TQDWVSLPGVLPVASGGIHVWHMPALTEIFRDDSVLQFGGVTLGHPWGNAPGAIANRVSL 239

[Close]

BLAST of CmaCh00G001130 vs. ExPASy TrEMBL
Match: A0A1R3KTJ9 (Ribulose bisphosphate carboxylase large chain OS=Corchorus capsularis OX=210143 GN=CCACVL1_00982 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.0e-52
Identity = 133/271 (49.08%), Postives = 142/271 (52.40%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK----------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+           
Sbjct: 60  KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGE 119

Query: 96  ----FLN-------------------------HR----------------------LKLN 155
               +LN                         HR                      L+L+
Sbjct: 120 IKGHYLNATAGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLS 179

Query: 156 ---------------------------------------GIYFTQDWVSLPGVLPVASGG 200
                                                  GIYFTQDWVS+PGVLPVASGG
Sbjct: 180 GGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSIPGVLPVASGG 239

[Close]

BLAST of CmaCh00G001130 vs. ExPASy TrEMBL
Match: A0A385G263 (Ribulose bisphosphate carboxylase large chain OS=Ammopiptanthus mongolicus OX=126911 GN=rbcL PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.0e-52
Identity = 134/271 (49.45%), Postives = 142/271 (52.40%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK----------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+           
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGE 234

Query: 96  ----FLN-------------------------HR----------------------LKLN 155
               +LN                         HR                      L+L+
Sbjct: 235 IKGHYLNATAGGFTANTSLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLS 294

Query: 156 ---------------------------------------GIYFTQDWVSLPGVLPVASGG 200
                                                  GIYFTQDWVSLPGVLPVASGG
Sbjct: 295 GGDHIHAGTVVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGG 354

[Close]

BLAST of CmaCh00G001130 vs. NCBI nr
Match: KAB1219093.1 (Ribulose bisphosphate carboxylase large chain [Morella rubra])

HSP 1 Score: 228.8 bits (582), Expect = 4.1e-56
Identity = 132/243 (54.32%), Postives = 138/243 (56.79%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 182 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGE 241

Query: 96  ----------------NHRL---------------------------------------- 155
                           NH +                                        
Sbjct: 242 IKGHYLNATAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLL 301

Query: 156 --------KLNGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGA 200
                   +  GIYFTQDWVSLPGVLPVASGGIHVWHMPALTE+     +       FG 
Sbjct: 302 RDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEI-----FGDDSVLQFGG 361

[Close]

BLAST of CmaCh00G001130 vs. NCBI nr
Match: EMS54729.1 (Ribulose bisphosphate carboxylase large chain [Triticum urartu])

HSP 1 Score: 226.5 bits (576), Expect = 2.1e-55
Identity = 130/243 (53.50%), Postives = 138/243 (56.79%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQSETGE 234

Query: 96  ----------------NHRL---------------------------------------- 155
                           NH +                                        
Sbjct: 235 IKGHYLNATAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLL 294

Query: 156 --------KLNGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGA 200
                   +  GI+FTQDWVSLPGVLPVASGGIHVWHMPALTE+     +       FG 
Sbjct: 295 RDDFVEKDRSRGIFFTQDWVSLPGVLPVASGGIHVWHMPALTEI-----FGDDSVLQFGG 354

[Close]

BLAST of CmaCh00G001130 vs. NCBI nr
Match: KAG6540034.1 (hypothetical protein Mapa_018617 [Marchantia paleacea])

HSP 1 Score: 218.4 bits (555), Expect = 5.6e-53
Identity = 128/251 (51.00%), Postives = 138/251 (54.98%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK----------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLF A+           
Sbjct: 175 KPKLGLSAKNYGRTVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKSQAETGE 234

Query: 96  ----FLN----------------------------------------------------H 155
               +LN                                                    H
Sbjct: 235 IKGHYLNATAGTCEEMLKRAACARELGVPIVMHDYLTGGFTANTSLAFYCRDNGLLLHIH 294

Query: 156 R--------------LKLNGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEMEMIPYYTP 200
           R              + + GIYFTQDWVSLPGV PVASGGIHVWHMPALTE+     +  
Sbjct: 295 RAMHAVIDRQKIMVCISVRGIYFTQDWVSLPGVFPVASGGIHVWHMPALTEI-----FGD 354

[Close]

BLAST of CmaCh00G001130 vs. NCBI nr
Match: PHT40438.1 (Ribulose bisphosphate carboxylase large chain [Capsicum baccatum])

HSP 1 Score: 218.0 bits (554), Expect = 7.3e-53
Identity = 123/223 (55.16%), Postives = 131/223 (58.74%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 95
           KPK  LSAKNY RVVYECL GGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 60  KPKLVLSAKNYGRVVYECLYGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKAQTETGE 119

Query: 96  --NHRL-----------------------------------------------KLNGIYF 155
              H L                                               +  GIYF
Sbjct: 120 IKGHYLNATAAKALRMSCGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEQDRSRGIYF 179

Query: 156 TQDWVSLPGVLPVASGGIHVWHMPALTEMEMIPYYTPIRRRNFG-AGGNAPGAVANRVAL 200
           TQDWVSLPGVLPVASGGIHVWHMPALTE+              G   GNAPGA+ANRV+L
Sbjct: 180 TQDWVSLPGVLPVASGGIHVWHMPALTEIFRDDSVLQFGGVTLGHPWGNAPGAIANRVSL 239

[Close]

BLAST of CmaCh00G001130 vs. NCBI nr
Match: OMP10368.1 (hypothetical protein CCACVL1_00982 [Corchorus capsularis])

HSP 1 Score: 216.5 bits (550), Expect = 2.1e-52
Identity = 133/271 (49.08%), Postives = 142/271 (52.40%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK----------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+           
Sbjct: 60  KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGE 119

Query: 96  ----FLN-------------------------HR----------------------LKLN 155
               +LN                         HR                      L+L+
Sbjct: 120 IKGHYLNATAGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLS 179

Query: 156 ---------------------------------------GIYFTQDWVSLPGVLPVASGG 200
                                                  GIYFTQDWVS+PGVLPVASGG
Sbjct: 180 GGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSIPGVLPVASGG 239

[Close]

BLAST of CmaCh00G001130 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 198.4 bits (503), Expect = 5.6e-51
Identity = 131/298 (43.96%), Postives = 139/298 (46.64%), Query Frame = 0


Query: 36  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK----------- 95
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+           
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGE 234

Query: 96  ----FLN----------------------------------------------------H 155
               +LN                                                    H
Sbjct: 235 IKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLSHYCRDNGLLLHIH 294

Query: 156 R----------------------LKLN--------------------------------- 200
           R                      L+L+                                 
Sbjct: 295 RAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGDRESTLGFVDLLRDDYV 354

[Close]

BLAST of CmaCh00G001130 vs. TAIR 10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-14
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 43 AKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK 85
          AKNY R VYECLRGGL FTKDDE V+SQPFM  RDRFLFCA+
Sbjct: 14 AKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAE 55

[Close]

BLAST of CmaCh00G001130 vs. TAIR 10
Match: ATMG00280.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-14
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 43 AKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK 85
          AKNY R VYECLRGGL FTKDDE V+SQPFM  RDRFLFCA+
Sbjct: 14 AKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAE 55

The following BLAST results are available for this feature:

BLAST of CmaCh00G001130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O63094	9.9e-53	44.30	Ribulose bisphosphate carboxylase large chain OS=Cajanus cajan OX=3821 GN=rbcL P...	[more]
Q31738	1.3e-52	44.30	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Brexia madagascarien...	[more]
O20346	1.3e-52	45.30	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Clitoria ternatea OX...	[more]
Q31983	1.3e-52	44.30	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus florida OX=42...	[more]
P48697	1.3e-52	45.30	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo OX=36...	[more]

BLAST of CmaCh00G001130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1W2I4	2.0e-56	54.32	Ribulose bisphosphate carboxylase large chain OS=Morella rubra OX=262757 GN=CJ03...	[more]
M8A2T1	9.9e-56	53.50	Ribulose bisphosphate carboxylase large chain OS=Triticum urartu OX=4572 GN=TRIU...	[more]
A0A2G2W5E2	3.5e-53	55.16	Ribulose bisphosphate carboxylase large chain OS=Capsicum baccatum OX=33114 GN=C...	[more]
A0A1R3KTJ9	1.0e-52	49.08	Ribulose bisphosphate carboxylase large chain OS=Corchorus capsularis OX=210143 ...	[more]
A0A385G263	1.0e-52	49.45	Ribulose bisphosphate carboxylase large chain OS=Ammopiptanthus mongolicus OX=12...	[more]

BLAST of CmaCh00G001130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB1219093.1	4.1e-56	54.32	Ribulose bisphosphate carboxylase large chain [Morella rubra]	[more]
EMS54729.1	2.1e-55	53.50	Ribulose bisphosphate carboxylase large chain [Triticum urartu]	[more]
KAG6540034.1	5.6e-53	51.00	hypothetical protein Mapa_018617 [Marchantia paleacea]	[more]
PHT40438.1	7.3e-53	55.16	Ribulose bisphosphate carboxylase large chain [Capsicum baccatum]	[more]
OMP10368.1	2.1e-52	49.08	hypothetical protein CCACVL1_00982 [Corchorus capsularis]	[more]

BLAST of CmaCh00G001130 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	5.6e-51	43.96	ribulose-bisphosphate carboxylases	[more]
AT2G07732.1	3.2e-14	80.95	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]
ATMG00280.1	3.2e-14	80.95	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 32..89 e-value: 7.6E-20 score: 73.3
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 90..199 e-value: 1.3E-28 score: 101.8
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 34..192
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 35..87 e-value: 8.7E-19 score: 67.8 coord: 91..194 e-value: 4.9E-15 score: 55.5
None	No IPR available	PANTHER	PTHR47910	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN, CATALYTIC DOMAIN-CONTAINING PROTEIN	coord: 92..199 coord: 29..85
IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	PROSITE	PS00157	RUBISCO_LARGE	coord: 57..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001130.1	CmaCh00G001130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity