CmaCh00G001090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cytochrome f
Location	Cma_Chr00: 4864819 .. 4865110 (-)
RNA-Seq Expression	CmaCh00G001090
Synteny	CmaCh00G001090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCCACGAGAAGCAACCAATCGGCCGTATTGTCTGCGCAAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCAATACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGCTGTTCTTATTTTACCCAAAGGGTTTGAATTAGCCCCCCCGATCGTATTTCTCCCAAGATTAAAGAAAAGATGGGCAATCCTTTCAGAGTTATCGTCCCACTAA

mRNA sequence

ATGAAAATCCACGAGAAGCAACCAATCGGCCGTATTGTCTGCGCAAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCAATACTTCCTGATACTTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGCTGTTCTTATTTTACCCAAAGGGTTTGAATTAGCCCCCCCGATCGTATTTCTCCCAAGATTAAAGAAAAGATGGGCAATCCTTTCAGAGTTATCGTCCCACTAA

Coding sequence (CDS)

ATGAAAATCCACGAGAAGCAACCAATCGGCCGTATTGTCTGCGCAAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCAATACTTCCTGATACTTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGCTGTTCTTATTTTACCCAAAGGGTTTGAATTAGCCCCCCCGATCGTATTTCTCCCAAGATTAAAGAAAAGATGGGCAATCCTTTCAGAGTTATCGTCCCACTAA

Protein sequence

MKIHEKQPIGRIVCANCHLANKPVSRFHKQYFLILSCEWEKGLNVSAVLILPKGFELAPPIVFLPRLKKRWAILSELSSH

Homology

[Close]

BLAST of CmaCh00G001090 vs. ExPASy Swiss-Prot
Match: A0A348 (Cytochrome f OS=Coffea arabica OX=13443 GN=petA PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.4e-11
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     + KQ   +L+   + GLNV 
Sbjct: 48  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDKQLKQVLANGKKGGLNVG 107

Query: 66  AVLILPKGFELAPPIVFLPRLKKRWAILS 76
           AVLILP+GFELAPP    P +K++   LS
Sbjct: 108 AVLILPEGFELAPPDRISPEIKEKIGNLS 136

[Close]

BLAST of CmaCh00G001090 vs. ExPASy Swiss-Prot
Match: B0Z4N9 (Cytochrome f OS=Oenothera argillicola OX=3940 GN=petA PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.4e-11
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     + +Q   +L+   + GLNV 
Sbjct: 46  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDRQVKQVLANGKKGGLNVG 105

Query: 66  AVLILPKGFELAPPIVFLPRLKKR 71
           AVLILP+GFELAPP    P +K+R
Sbjct: 106 AVLILPEGFELAPPARISPEMKER 129

[Close]

BLAST of CmaCh00G001090 vs. ExPASy Swiss-Prot
Match: B0Z4X3 (Cytochrome f OS=Oenothera biennis OX=3942 GN=petA PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.4e-11
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     + +Q   +L+   + GLNV 
Sbjct: 46  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDRQVKQVLANGKKGGLNVG 105

Query: 66  AVLILPKGFELAPPIVFLPRLKKR 71
           AVLILP+GFELAPP    P +K+R
Sbjct: 106 AVLILPEGFELAPPARISPEMKER 129

[Close]

BLAST of CmaCh00G001090 vs. ExPASy Swiss-Prot
Match: P04658 (Cytochrome f OS=Oenothera elata subsp. hookeri OX=85636 GN=petA PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 8.4e-11
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     + +Q   +L+   + GLNV 
Sbjct: 46  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDRQVKQVLANGKKGGLNVG 105

Query: 66  AVLILPKGFELAPPIVFLPRLKKR 71
           AVLILP+GFELAPP    P +K+R
Sbjct: 106 AVLILPEGFELAPPARISPEMKER 129

[Close]

BLAST of CmaCh00G001090 vs. ExPASy Swiss-Prot
Match: B0Z557 (Cytochrome f OS=Oenothera glazioviana OX=482428 GN=petA PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.4e-11
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     + +Q   +L+   + GLNV 
Sbjct: 46  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDRQVKQVLANGKKGGLNVG 105

Query: 66  AVLILPKGFELAPPIVFLPRLKKR 71
           AVLILP+GFELAPP    P +K+R
Sbjct: 106 AVLILPEGFELAPPARISPEMKER 129

[Close]

BLAST of CmaCh00G001090 vs. ExPASy TrEMBL
Match: A0A6A1W1L6 (Apocytochrome f OS=Morella rubra OX=262757 GN=CJ030_MR3G018690 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 42/84 (50.00%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     +  Q   +L+   +  LNV 
Sbjct: 76  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGALNVG 135

Query: 66  AVLILPKGFELAPPIVFLPRLKKR 71
           AVLILP GFELAPPIVF PRLKKR
Sbjct: 136 AVLILPDGFELAPPIVFRPRLKKR 159

[Close]

BLAST of CmaCh00G001090 vs. ExPASy TrEMBL
Match: A0A5K1HCI3 (Apocytochr_F_N domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29225 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 40/80 (50.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     +  Q   +L+   + GLNV 
Sbjct: 37  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVG 96

Query: 66  AVLILPKGFELAPPIVFLPR 67
           AVLILP+GFELAPPIVFLPR
Sbjct: 97  AVLILPEGFELAPPIVFLPR 116

[Close]

BLAST of CmaCh00G001090 vs. ExPASy TrEMBL
Match: A0A2G2XBY1 (Cytochrome f OS=Capsicum baccatum OX=33114 GN=CQW23_03473 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 6  KQPIGRIVCANCHLANKPVSRFHKQYFLILSCEWEKGLNVSAVLILPKGFELAPPIVFLP 65
          ++  GRIVCANCHLANKPV     Q   +L+   + GLNV AVLILP+GFELAPP    P
Sbjct: 26 REATGRIVCANCHLANKPVEIEVPQ--AVLANGKKGGLNVGAVLILPEGFELAPPDRISP 85

Query: 66 RLKKRWAILS 76
           +K+R   LS
Sbjct: 86 EMKERIGNLS 93

[Close]

BLAST of CmaCh00G001090 vs. ExPASy TrEMBL
Match: A0A6F8FBK4 (Cytochrome f OS=Coptosapelta flavescens OX=86988 GN=petA PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.8e-09
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                    R+ KQ   +L+     GLNV 
Sbjct: 48  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIRYDKQLKQVLANGKRGGLNVG 107

Query: 66  AVLILPKGFELAPPIVFLPRLKKRWAILS 76
           AVLILP+GFELAPP    P +K++   LS
Sbjct: 108 AVLILPEGFELAPPDRISPEIKEKIGNLS 136

[Close]

BLAST of CmaCh00G001090 vs. ExPASy TrEMBL
Match: A0A6B9QEM0 (Cytochrome f OS=Coffea benghalensis var. bababudanii OX=307648 GN=petA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     + KQ   +L+   + GLNV 
Sbjct: 48  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDKQLKQVLANGKKGGLNVG 107

Query: 66  AVLILPKGFELAPPIVFLPRLKKRWAILS 76
           AVLILP+GFELAPP    P +K+R   LS
Sbjct: 108 AVLILPEGFELAPPDRISPEIKERIGNLS 136

[Close]

BLAST of CmaCh00G001090 vs. NCBI nr
Match: QHN97880.1 (Cytochrome f [Arachis hypogaea])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     +  Q   +L+   +  LNV 
Sbjct: 48  REATGRIVCANCHLANKPVDIEVPQTVLPDTVFEAVVRIPYDMQIKQVLANGKKGALNVG 107

Query: 66  AVLILPKGFELAPPIVFLPRLKKRWAI 74
           AVLILP+GFELAPPIVF PRLKK W I
Sbjct: 108 AVLILPEGFELAPPIVFHPRLKKSWVI 134

[Close]

BLAST of CmaCh00G001090 vs. NCBI nr
Match: QHO46263.1 (Cytochrome f [Arachis hypogaea])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     +  Q   +L+   +  LNV 
Sbjct: 48  REATGRIVCANCHLANKPVDIEVPQTVLPDTVFEAVVRIPYDMQIKQVLANGKKGALNVG 107

Query: 66  AVLILPKGFELAPPIVFLPRLKKRWAI 74
           AVLILP+GFELAPPIVF PRLKK W I
Sbjct: 108 AVLILPEGFELAPPIVFHPRLKKSWVI 134

[Close]

BLAST of CmaCh00G001090 vs. NCBI nr
Match: KAB1219091.1 (Apocytochrome f [Morella rubra])

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-10
Identity = 42/84 (50.00%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     +  Q   +L+   +  LNV 
Sbjct: 76  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGALNVG 135

Query: 66  AVLILPKGFELAPPIVFLPRLKKR 71
           AVLILP GFELAPPIVF PRLKKR
Sbjct: 136 AVLILPDGFELAPPIVFRPRLKKR 159

[Close]

BLAST of CmaCh00G001090 vs. NCBI nr
Match: VVW85412.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 40/80 (50.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     +  Q   +L+   + GLNV 
Sbjct: 37  REATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVG 96

Query: 66  AVLILPKGFELAPPIVFLPR 67
           AVLILP+GFELAPPIVFLPR
Sbjct: 97  AVLILPEGFELAPPIVFLPR 116

[Close]

BLAST of CmaCh00G001090 vs. NCBI nr
Match: PHT54987.1 (Cytochrome f [Capsicum baccatum])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-09
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 6  KQPIGRIVCANCHLANKPVSRFHKQYFLILSCEWEKGLNVSAVLILPKGFELAPPIVFLP 65
          ++  GRIVCANCHLANKPV     Q   +L+   + GLNV AVLILP+GFELAPP    P
Sbjct: 26 REATGRIVCANCHLANKPVEIEVPQ--AVLANGKKGGLNVGAVLILPEGFELAPPDRISP 85

Query: 66 RLKKRWAILS 76
           +K+R   LS
Sbjct: 86 EMKERIGNLS 93

[Close]

BLAST of CmaCh00G001090 vs. TAIR 10
Match: ATCG00540.1 (photosynthetic electron transfer A )

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-10
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 6   KQPIGRIVCANCHLANKPVS-------------------RFHKQYFLILSCEWEKGLNVS 65
           ++  GRIVCANCHLANKPV                     +  Q   +L+   +  LNV 
Sbjct: 48  REATGRIVCANCHLANKPVDIEVPQTVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVG 107

Query: 66  AVLILPKGFELAPPIVFLPRLKKRWAILS 76
           AVLILP+GFELAPP    P +K++   LS
Sbjct: 108 AVLILPEGFELAPPDRISPEMKEKIGNLS 136

The following BLAST results are available for this feature:

BLAST of CmaCh00G001090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A348	6.4e-11	43.82	Cytochrome f OS=Coffea arabica OX=13443 GN=petA PE=3 SV=1	[more]
B0Z4N9	8.4e-11	44.05	Cytochrome f OS=Oenothera argillicola OX=3940 GN=petA PE=3 SV=1	[more]
B0Z4X3	8.4e-11	44.05	Cytochrome f OS=Oenothera biennis OX=3942 GN=petA PE=3 SV=1	[more]
P04658	8.4e-11	44.05	Cytochrome f OS=Oenothera elata subsp. hookeri OX=85636 GN=petA PE=1 SV=2	[more]
B0Z557	8.4e-11	44.05	Cytochrome f OS=Oenothera glazioviana OX=482428 GN=petA PE=3 SV=1	[more]

BLAST of CmaCh00G001090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1W1L6	2.5e-10	50.00	Apocytochrome f OS=Morella rubra OX=262757 GN=CJ030_MR3G018690 PE=4 SV=1	[more]
A0A5K1HCI3	9.6e-10	50.00	Apocytochr_F_N domain-containing protein (Fragment) OS=Nymphaea colorata OX=2102...	[more]
A0A2G2XBY1	1.6e-09	55.71	Cytochrome f OS=Capsicum baccatum OX=33114 GN=CQW23_03473 PE=3 SV=1	[more]
A0A6F8FBK4	4.8e-09	44.94	Cytochrome f OS=Coptosapelta flavescens OX=86988 GN=petA PE=3 SV=1	[more]
A0A6B9QEM0	1.1e-08	44.94	Cytochrome f OS=Coffea benghalensis var. bababudanii OX=307648 GN=petA PE=3 SV=1	[more]

BLAST of CmaCh00G001090 vs. NCBI nr


Match Name	E-value	Identity	Description
QHN97880.1	2.8e-11	49.43	Cytochrome f [Arachis hypogaea]	[more]
QHO46263.1	2.8e-11	49.43	Cytochrome f [Arachis hypogaea]	[more]
KAB1219091.1	5.2e-10	50.00	Apocytochrome f [Morella rubra]	[more]
VVW85412.1	2.0e-09	50.00	unnamed protein product, partial [Nymphaea colorata]	[more]
PHT54987.1	3.4e-09	55.71	Cytochrome f [Capsicum baccatum]	[more]

BLAST of CmaCh00G001090 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00540.1	1.1e-10	41.57	photosynthetic electron transfer A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002325	Cytochrome f	PRINTS	PR00610	CYTOCHROMEF	coord: 2..21 score: 55.87 coord: 44..64 score: 64.8
IPR002325	Cytochrome f	PROSITE	PS51010	CYTF	coord: 1..80 score: 12.484827
IPR036826	Cytochrome f large domain superfamily	GENE3D	2.60.40.830	Cytochrome f large domain	coord: 3..34 e-value: 1.5E-5 score: 26.9
IPR036826	Cytochrome f large domain superfamily	SUPERFAMILY	49441	Cytochrome f, large domain	coord: 7..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001090.1	CmaCh00G001090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0031361	integral component of thylakoid membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding