CmaCh00G001010 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribulose bisphosphate carboxylase large chain
Location	Cma_Chr00: 4664664 .. 4664891 (-)
RNA-Seq Expression	CmaCh00G001010
Synteny	CmaCh00G001010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATGGAATTATGGAATCGAGCCTCTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTGACTTCCATTGTGGTTAATGTATGTGGATTCAAGGCTCTGCGTGCTCTACGTCTGTTTGCGAATCCCTACCGCTTATATTCAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGA

mRNA sequence

ATGCTATGGAATTATGGAATCGAGCCTCTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTGACTTCCATTGTGGTTAATGCTCTGCGTGCTCTACGTCTGTTTGCGAATCCCTACCGCTTATATTCAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGA

Coding sequence (CDS)

ATGCTATGGAATTATGGAATCGAGCCTCTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTGACTTCCATTGTGGTTAATGCTCTGCGTGCTCTACGTCTGTTTGCGAATCCCTACCGCTTATATTCAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGA

Protein sequence

MLWNYGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVNALRALRLFANPYRLYSNFPRPASWYPG

Homology

[Close]

BLAST of CmaCh00G001010 vs. ExPASy Swiss-Prot
Match: P36478 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthocleista grandiflora OX=28539 GN=rbcL PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-15
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNM TSIV N     ALRALRL
Sbjct: 76  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRL 126

[Close]

BLAST of CmaCh00G001010 vs. ExPASy Swiss-Prot
Match: P48693 (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=rbcL PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-15
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNM TSIV N     ALRALRL
Sbjct: 85  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRL 135

[Close]

BLAST of CmaCh00G001010 vs. ExPASy Swiss-Prot
Match: P48697 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo OX=3663 GN=rbcL PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-15
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNM TSIV N     ALRALRL
Sbjct: 76  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRL 126

[Close]

BLAST of CmaCh00G001010 vs. ExPASy Swiss-Prot
Match: P48706 (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa OX=4236 GN=rbcL PE=3 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-15
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNM TSIV N     ALRALRL
Sbjct: 85  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRL 135

[Close]

BLAST of CmaCh00G001010 vs. ExPASy Swiss-Prot
Match: P24312 (Ribulose bisphosphate carboxylase large chain OS=Cyanophora paradoxa OX=2762 GN=rbcL PE=3 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-15
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 4   NYGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           +YG EP+PGEENQYI Y+AYPLDLFEEGSVTNMLTSIV N     ALRALRL
Sbjct: 84  SYGFEPVPGEENQYICYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRL 135

[Close]

BLAST of CmaCh00G001010 vs. ExPASy TrEMBL
Match: A0A482K4K5 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Symphyotrichum ontarionis OX=1503869 GN=rbcL PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-13
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALR-LFANPYRLY 64
           YGIEP+PGEENQ+IAY+AYPLDLFEEGSVTNM TS+V N     ALRALR  FANP    
Sbjct: 78  YGIEPVPGEENQFIAYVAYPLDLFEEGSVTNMFTSVVGNVFGFKALRALRGRFANPSAYV 137

[Close]

BLAST of CmaCh00G001010 vs. ExPASy TrEMBL
Match: Q5EKM1 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Schlechtendalia luzulifolia OX=41633 GN=rbcL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-13
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNMLTSIV N     ALRALRL
Sbjct: 71  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRL 121

[Close]

BLAST of CmaCh00G001010 vs. ExPASy TrEMBL
Match: A0A076L5Q3 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Schlechtendalia luzulifolia OX=41633 GN=rbcL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-13
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNMLTSIV N     ALRALRL
Sbjct: 85  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRL 135

[Close]

BLAST of CmaCh00G001010 vs. ExPASy TrEMBL
Match: C4MXL5 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Schlechtendalia luzulifolia OX=41633 GN=rbcL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-13
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNMLTSIV N     ALRALRL
Sbjct: 71  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRL 121

[Close]

BLAST of CmaCh00G001010 vs. ExPASy TrEMBL
Match: A0A3P6DZ92 (Ribulose bisphosphate carboxylase large chain OS=Brassica campestris OX=3711 GN=BRASC58T46418Z PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 46/72 (63.89%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL--FANPYRL 64
           Y IEP+PGEE Q+IAY+AYPLDLFEEGSVTNM TSIV N     AL ALRL     P   
Sbjct: 85  YHIEPVPGEETQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALAALRLEDLRIPPAY 144

Query: 65  YSNFPRPASWYP 70
             NFP   SWYP
Sbjct: 145 TKNFPGTTSWYP 156

[Close]

BLAST of CmaCh00G001010 vs. NCBI nr
Match: QBP45630.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Symphyotrichum ontarionis])

HSP 1 Score: 83.6 bits (205), Expect = 7.6e-13
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALR-LFANPYRLY 64
           YGIEP+PGEENQ+IAY+AYPLDLFEEGSVTNM TS+V N     ALRALR  FANP    
Sbjct: 78  YGIEPVPGEENQFIAYVAYPLDLFEEGSVTNMFTSVVGNVFGFKALRALRGRFANPSAYV 137

[Close]

BLAST of CmaCh00G001010 vs. NCBI nr
Match: AAW78405.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Schlechtendalia luzulifolia])

HSP 1 Score: 83.2 bits (204), Expect = 9.9e-13
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNMLTSIV N     ALRALRL
Sbjct: 71  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRL 121

[Close]

BLAST of CmaCh00G001010 vs. NCBI nr
Match: ACJ02961.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Schlechtendalia luzulifolia])

HSP 1 Score: 83.2 bits (204), Expect = 9.9e-13
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNMLTSIV N     ALRALRL
Sbjct: 71  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRL 121

[Close]

BLAST of CmaCh00G001010 vs. NCBI nr
Match: AIJ03450.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Schlechtendalia luzulifolia])

HSP 1 Score: 83.2 bits (204), Expect = 9.9e-13
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           YGIEP+PGEENQYIAY+AYPLDLFEEGSVTNMLTSIV N     ALRALRL
Sbjct: 85  YGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRL 135

[Close]

BLAST of CmaCh00G001010 vs. NCBI nr
Match: VDD24459.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 46/72 (63.89%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL--FANPYRL 64
           Y IEP+PGEE Q+IAY+AYPLDLFEEGSVTNM TSIV N     AL ALRL     P   
Sbjct: 85  YHIEPVPGEETQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALAALRLEDLRIPPAY 144

Query: 65  YSNFPRPASWYP 70
             NFP   SWYP
Sbjct: 145 TKNFPGTTSWYP 156

[Close]

BLAST of CmaCh00G001010 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 5   YGIEPLPGEENQYIAYLAYPLDLFEEGSVTNMLTSIVVN-----ALRALRL 51
           Y IEP+PGEE Q+IAY+AYPLDLFEEGSVTNM TSIV N     AL ALRL
Sbjct: 85  YHIEPVPGEETQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALAALRL 135

The following BLAST results are available for this feature:

BLAST of CmaCh00G001010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36478	3.8e-15	82.35	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthocleista grandif...	[more]
P48693	3.8e-15	82.35	Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=r...	[more]
P48697	3.8e-15	82.35	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo OX=36...	[more]
P48706	3.8e-15	82.35	Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa OX=4236 GN=rbcL ...	[more]
P24312	6.4e-15	78.85	Ribulose bisphosphate carboxylase large chain OS=Cyanophora paradoxa OX=2762 GN=...	[more]

BLAST of CmaCh00G001010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A482K4K5	3.7e-13	68.18	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Symphyotrichum ontar...	[more]
Q5EKM1	4.8e-13	84.31	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Schlechtendalia luzu...	[more]
A0A076L5Q3	4.8e-13	84.31	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Schlechtendalia luzu...	[more]
C4MXL5	4.8e-13	84.31	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Schlechtendalia luzu...	[more]
A0A3P6DZ92	6.2e-13	63.89	Ribulose bisphosphate carboxylase large chain OS=Brassica campestris OX=3711 GN=...	[more]

BLAST of CmaCh00G001010 vs. NCBI nr


Match Name	E-value	Identity	Description
QBP45630.1	7.6e-13	68.18	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Symphyot...	[more]
AAW78405.1	9.9e-13	84.31	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Schlecht...	[more]
ACJ02961.1	9.9e-13	84.31	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Schlecht...	[more]
AIJ03450.1	9.9e-13	84.31	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Schlecht...	[more]
VDD24459.1	1.3e-12	63.89	unnamed protein product [Brassica rapa]	[more]

BLAST of CmaCh00G001010 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	1.6e-13	74.51	ribulose-bisphosphate carboxylases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 5..45 e-value: 1.1E-7 score: 32.0
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	3.30.70.150		coord: 4..53 e-value: 2.5E-11 score: 45.5
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 5..50
IPR033966	RuBisCO	PANTHER	PTHR42704	RIBULOSE BISPHOSPHATE CARBOXYLASE	coord: 5..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001010.1	CmaCh00G001010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0015977	carbon fixation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity