CmaCh00G001000 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribulose bisphosphate carboxylase large chain
Location	Cma_Chr00: 4663579 .. 4664643 (-)
RNA-Seq Expression	CmaCh00G001000
Synteny	CmaCh00G001000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGCCCTCTATTGGGATGTACTATGTAAACCAAAATGGGGATTATCCGCTAAGAATTATTGTAGAGTCGTTTATGAGTGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAAGGTTCATTCCCAACCATTTATGCATTGTAGAGACCGTTTCCTATTTTGTGCGAAATTTCTCAATCACAGGCTAAAGTAAAATCAAGGGACAATACTTGAATGCTACTGTGCGGGTACATGCGAAGAAATGGCTTTGCTCGAGAATTGGGAGTTATTCTTTCACGAACTGTAAACAAAGAGAAATACTCCTTATTCATGAGAGTGAACTCTGGAACCTTCTTGAACTCGGGTTTCACTATTTTACGGTCTCTTCTCTTTTCTTTCCTTTGATTCTGCTTTCAAGACTCTTCAAATTCAAGAATCATTCCCCTTCACTTCTATTCCCTTCTGTTATGGTGAGTTATTCTTGTTAACAGGTGGATTCACTACAAATACTAGCTTGGCTCATTCATTATTGCCGAGATAATGGTCTACTTCTTCACAGTCACCGTGCAATGCATGTCGTTATTCATAGAAGAATCATGGTATGCGCTTCCCTTCCGTGTACTAGCTAAAGCGTTACGCCTGTTTGGTGGAGACCATATTCACGCTGGTATCGTAGTAGGTAAACTTGAAGAATGGGAAAGAGACATTTAGGCTTTGTTGATTTAGTGATGATTTTGTTGAAAAAGATCGAACGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGTCAGTGGCTTCCGGTGGTATTCACGTTTGGCATATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGTCGTGATCTTGCTCGTGAGGGTAGGTAATGAAATTATCCGTGAGGCTAGTAATTGGAGTCCTGAACTAGCTACTGCTTGTGAAGTATGGAAGGCGATCAAATTCTAA

mRNA sequence

ATGGTCGCCCTCTATTGGGATGTACTATGTAAACCAAAATGGGGATTATCCGCTAAGAATTATTGTAGAGTCGTTTATGAGTGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAAGGTTCATTCCCAACCATTTATGCATTGTAGAGACCGTTTCCTATTTTGTGCGAAATTTCTCAATCACAGGCTAAAATCGAACGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGTCAGTGGCTTCCGGTGGTATTCACGTTTGGCATATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGTCGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAGGCTAGTAATTGGAGTCCTGAACTAGCTACTGCTTGTGAAGTATGGAAGGCGATCAAATTCTAA

Coding sequence (CDS)

ATGGTCGCCCTCTATTGGGATGTACTATGTAAACCAAAATGGGGATTATCCGCTAAGAATTATTGTAGAGTCGTTTATGAGTGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAAGGTTCATTCCCAACCATTTATGCATTGTAGAGACCGTTTCCTATTTTGTGCGAAATTTCTCAATCACAGGCTAAAATCGAACGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGTCAGTGGCTTCCGGTGGTATTCACGTTTGGCATATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGTCGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAGGCTAGTAATTGGAGTCCTGAACTAGCTACTGCTTGTGAAGTATGGAAGGCGATCAAATTCTAA

Protein sequence

MVALYWDVLCKPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFLNHRLKSNGIYFTQDWVSLPGVLSVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGAGGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASNWSPELATACEVWKAIKF

Homology

[Close]

BLAST of CmaCh00G001000 vs. ExPASy Swiss-Prot
Match: O63094 (Ribulose bisphosphate carboxylase large chain OS=Cajanus cajan OX=3821 GN=rbcL PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.9e-53
Identity = 133/298 (44.63%), Postives = 139/298 (46.64%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKAQAETGE 234

Query: 71  ------------------------------------------------------------ 130
                                                                       
Sbjct: 235 IKGHYLNATAGTCEEMIKRAVFARELGVPIIMHDYLTGGFTANTSLAHYCRDNGLLLHIH 294

Query: 131 -----------NHRL--------------------------------------------- 175
                      NH +                                             
Sbjct: 295 RAMHAVIDRQKNHGMHFRVLAKALRLSGGDHVHSGTVVGKLEGEREITLGFVDLLRDDFV 354

[Close]

BLAST of CmaCh00G001000 vs. ExPASy Swiss-Prot
Match: O20346 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Clitoria ternatea OX=43366 GN=rbcL PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.6e-53
Identity = 132/298 (44.30%), Postives = 139/298 (46.64%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 165 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGE 224

Query: 71  ------------------------------------------------------------ 130
                                                                       
Sbjct: 225 IKGHYLNATAGTCEEMIKRAVCARELGAPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIH 284

Query: 131 -----------NHRL--------------------------------------------- 175
                      NH +                                             
Sbjct: 285 RAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGEREITLGFVDLLRDDFV 344

[Close]

BLAST of CmaCh00G001000 vs. ExPASy Swiss-Prot
Match: Q07210 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Coleonema pulchellum OX=23551 GN=rbcL PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.6e-53
Identity = 134/298 (44.97%), Postives = 140/298 (46.98%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK----------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+           
Sbjct: 169 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAERIYKSQAETGE 228

Query: 71  ----FLN----------------------------------------------------H 130
               +LN                                                    H
Sbjct: 229 IKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIH 288

Query: 131 RL---------------------------------------------------------- 175
           R                                                           
Sbjct: 289 RAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFI 348

[Close]

BLAST of CmaCh00G001000 vs. ExPASy Swiss-Prot
Match: P48697 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo OX=3663 GN=rbcL PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.6e-53
Identity = 132/298 (44.30%), Postives = 139/298 (46.64%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 166 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGE 225

Query: 71  ------------------------------------------------------------ 130
                                                                       
Sbjct: 226 IKGHYLNATAGTCEEMMKRAIFARELGAPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIH 285

Query: 131 -----------NHRL--------------------------------------------- 175
                      NH +                                             
Sbjct: 286 RAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFV 345

[Close]

BLAST of CmaCh00G001000 vs. ExPASy Swiss-Prot
Match: P28416 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Garrya elliptica OX=4288 GN=rbcL PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.7e-53
Identity = 132/298 (44.30%), Postives = 138/298 (46.31%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFLN-------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +N        
Sbjct: 165 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAINKAQAETGE 224

Query: 71  -----------------------------------------------------------H 130
                                                                      H
Sbjct: 225 IKGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIH 284

Query: 131 RL---------------------------------------------------------- 175
           R                                                           
Sbjct: 285 RAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEGEREITLGFVDLLRDDFI 344

[Close]

BLAST of CmaCh00G001000 vs. ExPASy TrEMBL
Match: A0A6A1W2I4 (Ribulose bisphosphate carboxylase large chain OS=Morella rubra OX=262757 GN=CJ030_MR3G018692 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.3e-56
Identity = 132/243 (54.32%), Postives = 138/243 (56.79%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 182 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGE 241

Query: 71  ----------------NHRL---------------------------------------- 130
                           NH +                                        
Sbjct: 242 IKGHYLNATAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLL 301

Query: 131 --------KSNGIYFTQDWVSLPGVLSVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGA 175
                   +S GIYFTQDWVSLPGVL VASGGIHVWHMPALTE+     +       FG 
Sbjct: 302 RDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEI-----FGDDSVLQFGG 361

[Close]

BLAST of CmaCh00G001000 vs. ExPASy TrEMBL
Match: M8A2T1 (Ribulose bisphosphate carboxylase large chain OS=Triticum urartu OX=4572 GN=TRIUR3_00065 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 130/243 (53.50%), Postives = 138/243 (56.79%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQSETGE 234

Query: 71  ----------------NHRL---------------------------------------- 130
                           NH +                                        
Sbjct: 235 IKGHYLNATAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLL 294

Query: 131 --------KSNGIYFTQDWVSLPGVLSVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGA 175
                   +S GI+FTQDWVSLPGVL VASGGIHVWHMPALTE+     +       FG 
Sbjct: 295 RDDFVEKDRSRGIFFTQDWVSLPGVLPVASGGIHVWHMPALTEI-----FGDDSVLQFGG 354

[Close]

BLAST of CmaCh00G001000 vs. ExPASy TrEMBL
Match: A0A2G2W5E2 (Ribulose bisphosphate carboxylase large chain OS=Capsicum baccatum OX=33114 GN=CQW23_19292 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.0e-53
Identity = 123/223 (55.16%), Postives = 131/223 (58.74%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK  LSAKNY RVVYECL GGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 60  KPKLVLSAKNYGRVVYECLYGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKAQTETGE 119

Query: 71  --NHRL-----------------------------------------------KSNGIYF 130
              H L                                               +S GIYF
Sbjct: 120 IKGHYLNATAAKALRMSCGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEQDRSRGIYF 179

Query: 131 TQDWVSLPGVLSVASGGIHVWHMPALTEMEMIPYYTPIRRRNFG-AGGNAPGAVANRVAL 175
           TQDWVSLPGVL VASGGIHVWHMPALTE+              G   GNAPGA+ANRV+L
Sbjct: 180 TQDWVSLPGVLPVASGGIHVWHMPALTEIFRDDSVLQFGGVTLGHPWGNAPGAIANRVSL 239

[Close]

BLAST of CmaCh00G001000 vs. ExPASy TrEMBL
Match: A0A1R3KTJ9 (Ribulose bisphosphate carboxylase large chain OS=Corchorus capsularis OX=210143 GN=CCACVL1_00982 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.5e-52
Identity = 129/271 (47.60%), Postives = 138/271 (50.92%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 60  KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGE 119

Query: 71  --------------------------------------------NHRL------------ 130
                                                       NH +            
Sbjct: 120 IKGHYLNATAGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLS 179

Query: 131 ------------------------------------KSNGIYFTQDWVSLPGVLSVASGG 175
                                               +S GIYFTQDWVS+PGVL VASGG
Sbjct: 180 GGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSIPGVLPVASGG 239

[Close]

BLAST of CmaCh00G001000 vs. ExPASy TrEMBL
Match: A0A385G263 (Ribulose bisphosphate carboxylase large chain OS=Ammopiptanthus mongolicus OX=126911 GN=rbcL PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.5e-52
Identity = 130/271 (47.97%), Postives = 138/271 (50.92%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGE 234

Query: 71  --------------------------------------------NHRL------------ 130
                                                       NH +            
Sbjct: 235 IKGHYLNATAGGFTANTSLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLS 294

Query: 131 ------------------------------------KSNGIYFTQDWVSLPGVLSVASGG 175
                                               +S GIYFTQDWVSLPGVL VASGG
Sbjct: 295 GGDHIHAGTVVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGG 354

[Close]

BLAST of CmaCh00G001000 vs. NCBI nr
Match: KAB1219093.1 (Ribulose bisphosphate carboxylase large chain [Morella rubra])

HSP 1 Score: 228.4 bits (581), Expect = 4.7e-56
Identity = 132/243 (54.32%), Postives = 138/243 (56.79%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 182 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGE 241

Query: 71  ----------------NHRL---------------------------------------- 130
                           NH +                                        
Sbjct: 242 IKGHYLNATAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLL 301

Query: 131 --------KSNGIYFTQDWVSLPGVLSVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGA 175
                   +S GIYFTQDWVSLPGVL VASGGIHVWHMPALTE+     +       FG 
Sbjct: 302 RDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEI-----FGDDSVLQFGG 361

[Close]

BLAST of CmaCh00G001000 vs. NCBI nr
Match: EMS54729.1 (Ribulose bisphosphate carboxylase large chain [Triticum urartu])

HSP 1 Score: 226.1 bits (575), Expect = 2.3e-55
Identity = 130/243 (53.50%), Postives = 138/243 (56.79%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQSETGE 234

Query: 71  ----------------NHRL---------------------------------------- 130
                           NH +                                        
Sbjct: 235 IKGHYLNATAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLL 294

Query: 131 --------KSNGIYFTQDWVSLPGVLSVASGGIHVWHMPALTEMEMIPYYTPIRRRNFGA 175
                   +S GI+FTQDWVSLPGVL VASGGIHVWHMPALTE+     +       FG 
Sbjct: 295 RDDFVEKDRSRGIFFTQDWVSLPGVLPVASGGIHVWHMPALTEI-----FGDDSVLQFGG 354

[Close]

BLAST of CmaCh00G001000 vs. NCBI nr
Match: PHT40438.1 (Ribulose bisphosphate carboxylase large chain [Capsicum baccatum])

HSP 1 Score: 217.6 bits (553), Expect = 8.3e-53
Identity = 123/223 (55.16%), Postives = 131/223 (58.74%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK  LSAKNY RVVYECL GGLDFTKDDE V+SQPFM  RDRFLFCA+ L         
Sbjct: 60  KPKLVLSAKNYGRVVYECLYGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKAQTETGE 119

Query: 71  --NHRL-----------------------------------------------KSNGIYF 130
              H L                                               +S GIYF
Sbjct: 120 IKGHYLNATAAKALRMSCGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEQDRSRGIYF 179

Query: 131 TQDWVSLPGVLSVASGGIHVWHMPALTEMEMIPYYTPIRRRNFG-AGGNAPGAVANRVAL 175
           TQDWVSLPGVL VASGGIHVWHMPALTE+              G   GNAPGA+ANRV+L
Sbjct: 180 TQDWVSLPGVLPVASGGIHVWHMPALTEIFRDDSVLQFGGVTLGHPWGNAPGAIANRVSL 239

[Close]

BLAST of CmaCh00G001000 vs. NCBI nr
Match: OMP10368.1 (hypothetical protein CCACVL1_00982 [Corchorus capsularis])

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-52
Identity = 129/271 (47.60%), Postives = 138/271 (50.92%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 60  KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGE 119

Query: 71  --------------------------------------------NHRL------------ 130
                                                       NH +            
Sbjct: 120 IKGHYLNATAGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLS 179

Query: 131 ------------------------------------KSNGIYFTQDWVSLPGVLSVASGG 175
                                               +S GIYFTQDWVS+PGVL VASGG
Sbjct: 180 GGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSIPGVLPVASGG 239

[Close]

BLAST of CmaCh00G001000 vs. NCBI nr
Match: YP_009526526.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Ammopiptanthus mongolicus] >AXV54285.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Ammopiptanthus mongolicus])

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-52
Identity = 130/271 (47.97%), Postives = 138/271 (50.92%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGE 234

Query: 71  --------------------------------------------NHRL------------ 130
                                                       NH +            
Sbjct: 235 IKGHYLNATAGGFTANTSLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLS 294

Query: 131 ------------------------------------KSNGIYFTQDWVSLPGVLSVASGG 175
                                               +S GIYFTQDWVSLPGVL VASGG
Sbjct: 295 GGDHIHAGTVVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGG 354

[Close]

BLAST of CmaCh00G001000 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 197.6 bits (501), Expect = 8.3e-51
Identity = 127/298 (42.62%), Postives = 135/298 (45.30%), Query Frame = 0


Query: 11  KPKWGLSAKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAKFL--------- 70
           KPK GLSAKNY R VYECLRGGLDFTKDDE V+SQPFM  RDRFLFCA+ +         
Sbjct: 175 KPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGE 234

Query: 71  ------------------------------------------------------------ 130
                                                                       
Sbjct: 235 IKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLSHYCRDNGLLLHIH 294

Query: 131 -----------NHRL--------------------------------------------- 175
                      NH +                                             
Sbjct: 295 RAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGDRESTLGFVDLLRDDYV 354

[Close]

BLAST of CmaCh00G001000 vs. TAIR 10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 18 AKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK 60
          AKNY R VYECLRGGL FTKDDE V+SQPFM  RDRFLFCA+
Sbjct: 14 AKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAE 55

[Close]

BLAST of CmaCh00G001000 vs. TAIR 10
Match: ATMG00280.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 18 AKNYCRVVYECLRGGLDFTKDDEKVHSQPFMHCRDRFLFCAK 60
          AKNY R VYECLRGGL FTKDDE V+SQPFM  RDRFLFCA+
Sbjct: 14 AKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAE 55

The following BLAST results are available for this feature:

BLAST of CmaCh00G001000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O63094	3.9e-53	44.63	Ribulose bisphosphate carboxylase large chain OS=Cajanus cajan OX=3821 GN=rbcL P...	[more]
O20346	6.6e-53	44.30	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Clitoria ternatea OX...	[more]
Q07210	6.6e-53	44.97	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Coleonema pulchellum...	[more]
P48697	6.6e-53	44.30	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo OX=36...	[more]
P28416	8.7e-53	44.30	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Garrya elliptica OX=...	[more]

BLAST of CmaCh00G001000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1W2I4	2.3e-56	54.32	Ribulose bisphosphate carboxylase large chain OS=Morella rubra OX=262757 GN=CJ03...	[more]
M8A2T1	1.1e-55	53.50	Ribulose bisphosphate carboxylase large chain OS=Triticum urartu OX=4572 GN=TRIU...	[more]
A0A2G2W5E2	4.0e-53	55.16	Ribulose bisphosphate carboxylase large chain OS=Capsicum baccatum OX=33114 GN=C...	[more]
A0A1R3KTJ9	1.5e-52	47.60	Ribulose bisphosphate carboxylase large chain OS=Corchorus capsularis OX=210143 ...	[more]
A0A385G263	1.5e-52	47.97	Ribulose bisphosphate carboxylase large chain OS=Ammopiptanthus mongolicus OX=12...	[more]

BLAST of CmaCh00G001000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB1219093.1	4.7e-56	54.32	Ribulose bisphosphate carboxylase large chain [Morella rubra]	[more]
EMS54729.1	2.3e-55	53.50	Ribulose bisphosphate carboxylase large chain [Triticum urartu]	[more]
PHT40438.1	8.3e-53	55.16	Ribulose bisphosphate carboxylase large chain [Capsicum baccatum]	[more]
OMP10368.1	3.2e-52	47.60	hypothetical protein CCACVL1_00982 [Corchorus capsularis]	[more]
YP_009526526.1	3.2e-52	47.97	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Ammopiptanthus mo...	[more]

BLAST of CmaCh00G001000 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	8.3e-51	42.62	ribulose-bisphosphate carboxylases	[more]
AT2G07732.1	2.1e-14	80.95	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]
ATMG00280.1	2.1e-14	80.95	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 10..64 e-value: 4.0E-19 score: 69.0 coord: 66..169 e-value: 2.4E-14 score: 53.3
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 6..65 e-value: 4.5E-20 score: 74.0
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 66..174 e-value: 3.9E-28 score: 100.2
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 9..173
None	No IPR available	PANTHER	PTHR47910	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN, CATALYTIC DOMAIN-CONTAINING PROTEIN	coord: 65..174 coord: 4..60
IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	PROSITE	PS00157	RUBISCO_LARGE	coord: 32..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001000.1	CmaCh00G001000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity