CmaCh00G000830 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G000830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPhotosystem I assembly protein Ycf4
LocationCma_Chr00: 4274272 .. 4274632 (-)
RNA-Seq ExpressionCmaCh00G000830
SyntenyCmaCh00G000830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGAATTTATAAGAAAGAGGATCTCAAAAGCAATTTCCGCTCGGCCTTTATCTATCCCCTTTTTTTAGGTTCATTAAGGTGTTGGTTGGAACTTCCAGTTACCTTGCTTGGTAGGGATTTGATATCTTGATTTCCATCTCAGCAAAGAATTTCTTTGTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTACAGGTCTCTTTACAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACCATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAAGAATAGTGTCTATTTTGGGGGGTTTCCTGGACAAAATCCTAGAATCTTCCTCCGATTCCTTATGA

mRNA sequence

ATGGATAGAATTTATAAGAAAGAGGATCTCAAAAGCAATTTCCGCTCGGCCTTTATCTATCCCCTTTTTTTAGGTTCATTAAGGTGTTGGTTGGAACTTCCAGTTACCTTGCTTGGTCTCTTTACAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACCATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAAGAATAGTGTCTATTTTGGGGGGTTTCCTGGACAAAATCCTAGAATCTTCCTCCGATTCCTTATGA

Coding sequence (CDS)

ATGGATAGAATTTATAAGAAAGAGGATCTCAAAAGCAATTTCCGCTCGGCCTTTATCTATCCCCTTTTTTTAGGTTCATTAAGGTGTTGGTTGGAACTTCCAGTTACCTTGCTTGGTCTCTTTACAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACCATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAAGAATAGTGTCTATTTTGGGGGGTTTCCTGGACAAAATCCTAGAATCTTCCTCCGATTCCTTATGA

Protein sequence

MDRIYKKEDLKSNFRSAFIYPLFLGSLRCWLELPVTLLGLFTGLFISSYLWCTILWNVGSGYDRFDRKERIVSILGGFLDKILESSSDSL
Homology
[Close]
BLAST of CmaCh00G000830 vs. ExPASy Swiss-Prot
Match: Q2QD78 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IVSI
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEEIVSI 104

[Close]
BLAST of CmaCh00G000830 vs. ExPASy Swiss-Prot
Match: P62719 (Photosystem I assembly protein Ycf4 OS=Aegilops crassa OX=4481 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-11
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IV I
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEGIVCI 104

[Close]
BLAST of CmaCh00G000830 vs. ExPASy Swiss-Prot
Match: Q6L602 (Photosystem I assembly protein Ycf4 OS=Aegilops speltoides OX=4573 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-11
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IV I
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEGIVCI 104

[Close]
BLAST of CmaCh00G000830 vs. ExPASy Swiss-Prot
Match: A1EA19 (Photosystem I assembly protein Ycf4 OS=Agrostis stolonifera OX=63632 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-11
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IV I
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEGIVCI 104

[Close]
BLAST of CmaCh00G000830 vs. ExPASy Swiss-Prot
Match: Q70XZ2 (Photosystem I assembly protein Ycf4 OS=Amborella trichopoda OX=13333 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-11
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IV I
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEGIVCI 104

[Close]
BLAST of CmaCh00G000830 vs. ExPASy TrEMBL
Match: A0A251VGW7 (Photosystem I assembly protein Ycf4 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0044901 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10
Identity = 49/86 (56.98%), Postives = 53/86 (61.63%), Query Frame = 0 

Query: 12  SNFRSAFIYPLFLGSLRCWLELPVTLLGL------FTGLFISSYLWCTILWNVGSGYDRF 71
           SNF  A I  LFLGSL   L    + LG+        GLFISSYLWCTI WNVGSGYDRF
Sbjct: 20  SNFCWAII--LFLGSLGFLLVGTSSYLGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRF 79

Query: 72  DRKERIVSIL-GGFLDKILESSSDSL 91
           D K+ IV I   GF  KI+ S SD L
Sbjct: 80  DIKDGIVCIFRWGFPGKIVGSFSDFL 103

[Close]
BLAST of CmaCh00G000830 vs. ExPASy TrEMBL
Match: A0A218KG38 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IVSI
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEEIVSI 104

[Close]
BLAST of CmaCh00G000830 vs. ExPASy TrEMBL
Match: A0A1X9Q1L1 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IVSI
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEEIVSI 104

[Close]
BLAST of CmaCh00G000830 vs. ExPASy TrEMBL
Match: A0A1S4EU22 (Photosystem I assembly protein Ycf4 OS=Cucumis melo OX=3656 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IVSI
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEEIVSI 104

[Close]
BLAST of CmaCh00G000830 vs. ExPASy TrEMBL
Match: A0A249S031 (Photosystem I assembly protein Ycf4 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IVSI
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEEIVSI 104

[Close]
BLAST of CmaCh00G000830 vs. NCBI nr
Match: KAF8735174.1 (hypothetical protein HU200_014502 [Digitaria exilis])

HSP 1 Score: 75.5 bits (184), Expect = 2.6e-10
Identity = 52/92 (56.52%), Postives = 54/92 (58.70%), Query Frame = 0 

Query: 12  SNFRSAFIYPLFLGSLRCWLELPVTLLGL------------FTGLFISSYLWCTILWNVG 71
           SNF  A I  LFLGSL   L    + LG               GLFISSYLWCTI WNVG
Sbjct: 20  SNFCWAVI--LFLGSLGFLLVGTSSYLGRNLLSGIVMSFYGIAGLFISSYLWCTISWNVG 79

Query: 72  SGYDRFDRKERIVSIL-GGFLDKILESSSDSL 91
           SGYDRFDRKE IV I   GF  KI+ S SDSL
Sbjct: 80  SGYDRFDRKEGIVCIFRWGFPGKIVVSFSDSL 109

[Close]
BLAST of CmaCh00G000830 vs. NCBI nr
Match: KAG5565837.1 (hypothetical protein RHGRI_001672 [Rhododendron griersonianum])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 47/98 (47.96%), Postives = 53/98 (54.08%), Query Frame = 0 

Query: 1  MDRIYKKEDLKSNFRSAFIYPLFLGSLRCWLELPVTLLG-----LF-------------- 60
          MDR YK     SNF   +++ LFLGSL   L  P + LG     LF              
Sbjct: 1  MDRTYKGPRKTSNF--CWVFILFLGSLGFLLVGPTSYLGRNLISLFLPQQIIFFPQGLIM 60

Query: 61 -----TGLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
                GLFIS+YLWCTILWNVGSGYDRF RKE IV +
Sbjct: 61 SFYGIAGLFISTYLWCTILWNVGSGYDRFVRKEGIVCL 96

[Close]
BLAST of CmaCh00G000830 vs. NCBI nr
Match: ASY96369.1 (photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis])

HSP 1 Score: 70.5 bits (171), Expect = 8.5e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IVSI
Sbjct: 73  GLFISSYLWCTILWNVGSGYDRFDRKEEIVSI 104

[Close]
BLAST of CmaCh00G000830 vs. NCBI nr
Match: AHM91182.1 (photosystem I assembly protein ycf4, partial [Lagenaria siceraria])

HSP 1 Score: 70.5 bits (171), Expect = 8.5e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFISSYLWCTILWNVGSGYDRFDRKE IVSI
Sbjct: 70  GLFISSYLWCTILWNVGSGYDRFDRKEEIVSI 101

[Close]
BLAST of CmaCh00G000830 vs. NCBI nr
Match: YP_009561437.1 (Ycf4 [Deutzianthus tonkinensis] >QAT19526.1 Ycf4 [Deutzianthus tonkinensis])

HSP 1 Score: 70.5 bits (171), Expect = 8.5e-09
Identity = 47/87 (54.02%), Postives = 49/87 (56.32%), Query Frame = 0 

Query: 12  SNFRSAFIYPLFLGSLRCWL-----ELPVTLLGLF-------------------TGLFIS 71
           SNFR AFI  LFLGS+   L      L   L+ LF                    GLFIS
Sbjct: 20  SNFRWAFI--LFLGSVGFLLVGISSYLGRNLISLFPSQQIIFFPQGIVMSFYGIAGLFIS 79

Query: 72  SYLWCTILWNVGSGYDRFDRKERIVSI 75
           SYLWCTILWNVGSGYDRFDRKE IV I
Sbjct: 80  SYLWCTILWNVGSGYDRFDRKEGIVCI 104

[Close]
BLAST of CmaCh00G000830 vs. TAIR 10
Match: ATCG00520.1 (unfolded protein binding )

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 43  GLFISSYLWCTILWNVGSGYDRFDRKERIVSI 75
           GLFIS YLWCTILWNVGSGYD FDRKE IV I
Sbjct: 73  GLFISCYLWCTILWNVGSGYDLFDRKEGIVRI 104

The following BLAST results are available for this feature:
BLAST of CmaCh00G000830 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QD781.1e-1196.88Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1[more]
P627197.2e-1193.75Photosystem I assembly protein Ycf4 OS=Aegilops crassa OX=4481 GN=ycf4 PE=3 SV=1[more]
Q6L6027.2e-1193.75Photosystem I assembly protein Ycf4 OS=Aegilops speltoides OX=4573 GN=ycf4 PE=3 ... [more]
A1EA197.2e-1193.75Photosystem I assembly protein Ycf4 OS=Agrostis stolonifera OX=63632 GN=ycf4 PE=... [more]
Q70XZ27.2e-1193.75Photosystem I assembly protein Ycf4 OS=Amborella trichopoda OX=13333 GN=ycf4 PE=... [more]
BLAST of CmaCh00G000830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A251VGW76.4e-1056.98Photosystem I assembly protein Ycf4 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr0... [more]
A0A218KG384.1e-0996.88Photosystem I assembly protein Ycf4 OS=Cucumis sativus var. hardwickii OX=319220... [more]
A0A1X9Q1L14.1e-0996.88Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1[more]
A0A1S4EU224.1e-0996.88Photosystem I assembly protein Ycf4 OS=Cucumis melo OX=3656 GN=ycf4 PE=3 SV=1[more]
A0A249S0314.1e-0996.88Photosystem I assembly protein Ycf4 OS=Cucumis melo var. cantalupensis OX=3658 G... [more]
BLAST of CmaCh00G000830 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF8735174.12.6e-1056.52hypothetical protein HU200_014502 [Digitaria exilis][more]
KAG5565837.12.2e-0947.96hypothetical protein RHGRI_001672 [Rhododendron griersonianum][more]
ASY96369.18.5e-0996.88photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis][more]
AHM91182.18.5e-0996.88photosystem I assembly protein ycf4, partial [Lagenaria siceraria][more]
YP_009561437.18.5e-0954.02Ycf4 [Deutzianthus tonkinensis] >QAT19526.1 Ycf4 [Deutzianthus tonkinensis][more]
BLAST of CmaCh00G000830 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00520.11.3e-1087.50unfolded protein binding [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003359Photosystem I Ycf4, assemblyPFAMPF02392Ycf4coord: 42..75
e-value: 5.7E-10
score: 39.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000830.1CmaCh00G000830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid