CmaCh00G000820 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Chloroplast envelope membrane protein
Location	Cma_Chr00: 4272802 .. 4274238 (-)
RNA-Seq Expression	CmaCh00G000820
Synteny	CmaCh00G000820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAAAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGCAAAAGGCTGCCGAATTGGCTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTCCTTGAGGAAGTTCAGAATGAATGCTTTCTTAGTTCGTAGCAAGAGGGATAAAACGGAAAAGATAGAATAGTTTTTTTTATAGACCCCTAGTATAACTTAACGGGAATTTCTGAAGAATGCTCATTCATTTGAGCCAAAGCAGACGTATAGGGAACAGACGGAAAACTGTCTTACTTTGTCCGAAATTATGATGCGTATGTAACTCCACAGTAACAAAAGTGGATTCTTTGATATTTGCTTTCTGTATTATTTCGAAATTCAAGGATTAACTAATGAACAGGGAATGGATTCATAATAGTATCTGATAAGATAAGGAACCACTACAAGGGGAGTAAGATTCGGATTACCTTGTTGATCGAATATCTCAAGGCAAGAACATTGTTTGAGATTCGAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAAGGCAAGAACACTTCCATGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCAAAGAAACTTAGTCATTGGCTAAAGAAGAGCACAAATGCTTCTTTTTACTATATTTTTCAAGTCCCTTACACATACAACATACATGGCTTTATATAGCCTCAAAATGGAACTACTATAGGCATTCCAAGAATTGTAACATTCATACTTAATGGTCATAATTAACCATTATGTAATTGTAACCTAAAGTAAATAAAAAGTCCTAAAAACTCTAAATTGTAACCCACCCAAAATTTATAACAATCAAACTTCACTCTTCTTCAATGTGGCATGCATTGAAACATCTTTTGATAATTTTGACAACTTTTTCTTCACATCGTCATTGAAGTATATTGTATGATTGATGTTTTTTTGTTCATATCAGTATCCATACGATTTTGCACTTCTCGACAAATAGAATCCGTTTCATTATTCTAAGTGGTTATTCTCTATTCTTGGTAATTAAGAACTTGTTATTCTTCACTCTTGGGTTCACGAGTTCCTATATAATTTAAGCGACACAATCAAAGCTTTTTCGATTCTTTTATTAACTGATTTATGTATAGGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

mRNA sequence

ATGTACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAAAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGCAAAAGGCTGCCGAATTGGCTGGCCTATTTCTTGCGTGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Coding sequence (CDS)

ATGTACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAAAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGCAAAAGGCTGCCGAATTGGCTGGCCTATTTCTTGCGTGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Protein sequence

MYVVSFIWKSEAKGPLTRTDQNLTHPTREKFEIEQKAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDTANIGSLFKSSISVTCSD

Homology

[Close]

BLAST of CmaCh00G000820 vs. ExPASy Swiss-Prot
Match: Q70XZ1 (Chloroplast envelope membrane protein OS=Amborella trichopoda OX=13333 GN=cemA PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-18
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L  +CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDSCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. ExPASy Swiss-Prot
Match: A6MM48 (Chloroplast envelope membrane protein OS=Buxus microphylla OX=153571 GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 147 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 200

[Close]

BLAST of CmaCh00G000820 vs. ExPASy Swiss-Prot
Match: Q0G9K7 (Chloroplast envelope membrane protein OS=Liriodendron tulipifera OX=3415 GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. ExPASy Swiss-Prot
Match: B1NWG2 (Chloroplast envelope membrane protein OS=Manihot esculenta OX=3983 GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 152 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 205

[Close]

BLAST of CmaCh00G000820 vs. ExPASy Swiss-Prot
Match: Q0ZJ08 (Chloroplast envelope membrane protein OS=Vitis vinifera OX=29760 GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. ExPASy TrEMBL
Match: A0A251VFK2 (Putative chloroplast envelope membrane protein, CemA OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0044891 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 53/73 (72.60%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT--ANIG 95
           KA  L  L   CIGFHSPHGWELMIG VYKDF F HNDQI+SGLVST PVILDT      
Sbjct: 79  KAFSLLLLTDLCIGFHSPHGWELMIGFVYKDFGFVHNDQIISGLVSTFPVILDTILKYDF 138

Query: 96  SLFKSSISVTCSD 107
            LFKS ISVTCSD
Sbjct: 139 PLFKSCISVTCSD 151

[Close]

BLAST of CmaCh00G000820 vs. ExPASy TrEMBL
Match: A0A410HFF9 (envelope membrane protein, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. ExPASy TrEMBL
Match: D3WBW2 (envelope membrane protein, chloroplastic OS=Meliosma aff. cuneifolia Moore 333 OX=723415 GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. ExPASy TrEMBL
Match: A0A7H0R146 (envelope membrane protein, chloroplastic OS=Sibbaldianthe bifurca OX=57928 GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. ExPASy TrEMBL
Match: A0A1S4EU20 (envelope membrane protein, chloroplastic OS=Cucumis melo OX=3656 GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: NP_904111.1 (envelope membrane protein [Amborella trichopoda] >Q70XZ1.1 RecName: Full=Chloroplast envelope membrane protein [Amborella trichopoda] >CAD45119.1 potential heme-binding protein [Amborella trichopoda])

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L  +CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDSCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: YP_009752339.1 (envelope membrane carbon uptake protein [Bryonia marmorata] >QIT04313.1 envelope membrane carbon uptake protein [Bryonia marmorata])

HSP 1 Score: 90.9 bits (224), Expect = 7.2e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: YP_010119746.1 (envelope membrane protein [Hemsleya zhejiangensis] >QRC26900.1 envelope membrane protein [Hemsleya zhejiangensis])

HSP 1 Score: 90.9 bits (224), Expect = 7.2e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: YP_009752932.1 (envelope membrane carbon uptake protein [Momordica sessilifolia] >QIT06004.1 envelope membrane carbon uptake protein [Momordica sessilifolia])

HSP 1 Score: 90.9 bits (224), Expect = 7.2e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: ALO22157.1 (cemA [Cucurbita foetidissima] >ALO22897.1 cemA [Cucurbita pedatifolia])

HSP 1 Score: 90.9 bits (224), Expect = 7.2e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. TAIR 10
Match: ATCG00530.1 (CemA-like proton extrusion protein-related )

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIG +YKDF F+H +QILSGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGYIYKDFGFAHYEQILSGLVSTFPVILDT 203

The following BLAST results are available for this feature:

BLAST of CmaCh00G000820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q70XZ1	5.5e-18	79.63	Chloroplast envelope membrane protein OS=Amborella trichopoda OX=13333 GN=cemA P...	[more]
A6MM48	2.1e-17	77.78	Chloroplast envelope membrane protein OS=Buxus microphylla OX=153571 GN=cemA PE=...	[more]
Q0G9K7	2.1e-17	77.78	Chloroplast envelope membrane protein OS=Liriodendron tulipifera OX=3415 GN=cemA...	[more]
B1NWG2	2.1e-17	77.78	Chloroplast envelope membrane protein OS=Manihot esculenta OX=3983 GN=cemA PE=3 ...	[more]
Q0ZJ08	2.1e-17	77.78	Chloroplast envelope membrane protein OS=Vitis vinifera OX=29760 GN=cemA PE=3 SV...	[more]

BLAST of CmaCh00G000820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251VFK2	2.2e-17	72.60	Putative chloroplast envelope membrane protein, CemA OS=Helianthus annuus OX=423...	[more]
A0A410HFF9	3.5e-15	79.63	envelope membrane protein, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=c...	[more]
D3WBW2	3.5e-15	79.63	envelope membrane protein, chloroplastic OS=Meliosma aff. cuneifolia Moore 333 O...	[more]
A0A7H0R146	3.5e-15	79.63	envelope membrane protein, chloroplastic OS=Sibbaldianthe bifurca OX=57928 GN=ce...	[more]
A0A1S4EU20	3.5e-15	79.63	envelope membrane protein, chloroplastic OS=Cucumis melo OX=3656 GN=cemA PE=3 SV...	[more]

BLAST of CmaCh00G000820 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_904111.1	4.2e-15	79.63	envelope membrane protein [Amborella trichopoda] >Q70XZ1.1 RecName: Full=Chlorop...	[more]
YP_009752339.1	7.2e-15	79.63	envelope membrane carbon uptake protein [Bryonia marmorata] >QIT04313.1 envelope...	[more]
YP_010119746.1	7.2e-15	79.63	envelope membrane protein [Hemsleya zhejiangensis] >QRC26900.1 envelope membrane...	[more]
YP_009752932.1	7.2e-15	79.63	envelope membrane carbon uptake protein [Momordica sessilifolia] >QIT06004.1 env...	[more]
ALO22157.1	7.2e-15	79.63	cemA [Cucurbita foetidissima] >ALO22897.1 cemA [Cucurbita pedatifolia]	[more]

BLAST of CmaCh00G000820 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00530.1	1.4e-16	72.22	CemA-like proton extrusion protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004282	Chloroplast envelope membrane protein, CemA	PFAM	PF03040	CemA	coord: 47..89 e-value: 1.9E-13 score: 50.9
IPR004282	Chloroplast envelope membrane protein, CemA	PANTHER	PTHR33650	CHLOROPLAST ENVELOPE MEMBRANE PROTEIN-RELATED	coord: 46..89
None	No IPR available	PANTHER	PTHR33650:SF2	CHLOROPLAST ENVELOPE MEMBRANE PROTEIN	coord: 46..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000820.1	CmaCh00G000820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015078	proton transmembrane transporter activity