CmaCh00G000810 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cytochrome f
Location	Cma_Chr00: 4271733 .. 4272090 (-)
RNA-Seq Expression	CmaCh00G000810
Synteny	CmaCh00G000810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGGAACAGTGGAAGGGGTCAGATTTACCCGGGAGTTAGAGTCATAATAATGTTGATAATGCTACACAGGTATAGTAAGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTATTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAATCCTACTAATATGGGAGGATTTGGTCAAGGAGATGCGGAAATAGTCCTTCAAGATCCATTACAAGGCCTTTTGTTCTTTTATCTGTTATAA

mRNA sequence

ATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGGAACAGTGGAAGGGGACCAGAACTTCTTATTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAATCCTACTAATATGGGAGGATTTGGTCAAGGAGATGCGGAAATAGTCCTTCAAGATCCATTACAAGGCCTTTTGTTCTTTTATCTGTTATAA

Coding sequence (CDS)

ATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGGAACAGTGGAAGGGGACCAGAACTTCTTATTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAATCCTACTAATATGGGAGGATTTGGTCAAGGAGATGCGGAAATAGTCCTTCAAGATCCATTACAAGGCCTTTTGTTCTTTTATCTGTTATAA

Protein sequence

MFTSENIPYTEAGTVEGDQNFLFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPLQGLLFFYLL

Homology

[Close]

BLAST of CmaCh00G000810 vs. ExPASy Swiss-Prot
Match: A8SEB6 (Cytochrome f OS=Ceratophyllum demersum OX=4428 GN=petA PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-11
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 27  GESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           GESIKI+QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 253 GESIKIDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. ExPASy Swiss-Prot
Match: A1E9K3 (Cytochrome f OS=Hordeum vulgare OX=4513 GN=petA PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-11
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 27  GESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           GESIKI+QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 253 GESIKIDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. ExPASy Swiss-Prot
Match: A1EA21 (Cytochrome f OS=Agrostis stolonifera OX=63632 GN=petA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-11
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 27  GESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 253 GESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. ExPASy Swiss-Prot
Match: A6MM49 (Cytochrome f OS=Buxus microphylla OX=153571 GN=petA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-11
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 27  GESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 253 GESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. ExPASy Swiss-Prot
Match: Q2QD76 (Cytochrome f OS=Cucumis sativus OX=3659 GN=petA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-11
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 27  GESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 253 GESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. ExPASy TrEMBL
Match: A0A6H0E2D2 (Cytochrome f OS=Hymenaea verrucosa OX=20679 GN=petA PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 22  LFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           LF   GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 248 LFVSEGESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. ExPASy TrEMBL
Match: A0A6H0EAB7 (Cytochrome f OS=Neoapaloxylon tuberosum OX=1911670 GN=petA PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 22  LFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           LF   GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 248 LFVSEGESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. ExPASy TrEMBL
Match: A0A6H0EBF9 (Cytochrome f OS=Peltogyne chrysopis OX=2723574 GN=petA PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 22  LFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           LF   GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 248 LFVSEGESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. ExPASy TrEMBL
Match: A0A287KBH9 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 20 NFLFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
          N + Q  GESIKI+QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 5  NKIPQSHGESIKIDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 52

[Close]

BLAST of CmaCh00G000810 vs. ExPASy TrEMBL
Match: A0A649X509 (Cytochrome f OS=Saraca indica OX=509014 GN=petA PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-09
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 22  LFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFF 66
           LF   GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF
Sbjct: 248 LFVSEGESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]

BLAST of CmaCh00G000810 vs. NCBI nr
Match: YP_009768515.1 (cytochrome f [Peltogyne chrysopis] >QIS99133.1 cytochrome f [Peltogyne chrysopis])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 22  LFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           LF   GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 248 LFVSEGESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. NCBI nr
Match: YP_009765686.1 (cytochrome f [Hymenaea verrucosa] >QIS95963.1 cytochrome f [Hymenaea verrucosa])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 22  LFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           LF   GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 248 LFVSEGESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. NCBI nr
Match: YP_009767677.1 (cytochrome f [Neoapaloxylon tuberosum] >QIS98295.1 cytochrome f [Neoapaloxylon tuberosum])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 22  LFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFFY 67
           LF   GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF+
Sbjct: 248 LFVSEGESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh00G000810 vs. NCBI nr
Match: YP_009454301.1 (cytochrome f [Guibourtia leonensis] >QWY86204.1 cytochrome f [Guibourtia coleosperma] >QWY86370.1 cytochrome f [Guibourtia ehie] >QWY86536.1 cytochrome f [Guibourtia tessmannii] >AUF70079.1 cytochrome f [Guibourtia leonensis] >QWZ46555.1 cytochrome f [Guibourtia ehie])

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 22  LFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFF 66
           LF   GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF
Sbjct: 248 LFVSEGESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]

BLAST of CmaCh00G000810 vs. NCBI nr
Match: QWY86453.1 (cytochrome f [Guibourtia pellegriniana])

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 22  LFQRAGESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFF 66
           LF   GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF
Sbjct: 248 LFVSEGESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]

BLAST of CmaCh00G000810 vs. TAIR 10
Match: ATCG00540.1 (photosynthetic electron transfer A )

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 27  GESIKINQPLTSNPTNMGGFGQGDAEIVLQDPL--QGLLFF 66
           GESIK++QPLTSNP N+GGFGQGDAEIVLQDPL  QGLLFF
Sbjct: 253 GESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

The following BLAST results are available for this feature:

BLAST of CmaCh00G000810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8SEB6	1.4e-11	85.71	Cytochrome f OS=Ceratophyllum demersum OX=4428 GN=petA PE=3 SV=1	[more]
A1E9K3	1.4e-11	85.71	Cytochrome f OS=Hordeum vulgare OX=4513 GN=petA PE=3 SV=1	[more]
A1EA21	2.5e-11	83.33	Cytochrome f OS=Agrostis stolonifera OX=63632 GN=petA PE=3 SV=1	[more]
A6MM49	2.5e-11	83.33	Cytochrome f OS=Buxus microphylla OX=153571 GN=petA PE=3 SV=1	[more]
Q2QD76	2.5e-11	83.33	Cytochrome f OS=Cucumis sativus OX=3659 GN=petA PE=3 SV=1	[more]

BLAST of CmaCh00G000810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0E2D2	1.4e-09	78.72	Cytochrome f OS=Hymenaea verrucosa OX=20679 GN=petA PE=3 SV=1	[more]
A0A6H0EAB7	1.4e-09	78.72	Cytochrome f OS=Neoapaloxylon tuberosum OX=1911670 GN=petA PE=3 SV=1	[more]
A0A6H0EBF9	1.4e-09	78.72	Cytochrome f OS=Peltogyne chrysopis OX=2723574 GN=petA PE=3 SV=1	[more]
A0A287KBH9	1.8e-09	77.55	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	[more]
A0A649X509	3.1e-09	80.43	Cytochrome f OS=Saraca indica OX=509014 GN=petA PE=3 SV=1	[more]

BLAST of CmaCh00G000810 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009768515.1	2.9e-09	78.72	cytochrome f [Peltogyne chrysopis] >QIS99133.1 cytochrome f [Peltogyne chrysopis...	[more]
YP_009765686.1	2.9e-09	78.72	cytochrome f [Hymenaea verrucosa] >QIS95963.1 cytochrome f [Hymenaea verrucosa]	[more]
YP_009767677.1	2.9e-09	78.72	cytochrome f [Neoapaloxylon tuberosum] >QIS98295.1 cytochrome f [Neoapaloxylon t...	[more]
YP_009454301.1	6.4e-09	80.43	cytochrome f [Guibourtia leonensis] >QWY86204.1 cytochrome f [Guibourtia coleosp...	[more]
QWY86453.1	6.4e-09	80.43	cytochrome f [Guibourtia pellegriniana]	[more]

BLAST of CmaCh00G000810 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00540.1	3.9e-12	85.37	photosynthetic electron transfer A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036826	Cytochrome f large domain superfamily	GENE3D	2.60.40.830	Cytochrome f large domain	coord: 5..60 e-value: 1.5E-5 score: 26.8
IPR036826	Cytochrome f large domain superfamily	SUPERFAMILY	49441	Cytochrome f, large domain	coord: 37..58
IPR002325	Cytochrome f	PFAM	PF01333	Apocytochr_F_C	coord: 24..65 e-value: 2.4E-10 score: 40.5
IPR002325	Cytochrome f	PROSITE	PS51010	CYTF	coord: 22..68 score: 10.678321

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000810.1	CmaCh00G000810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031361	integral component of thylakoid membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding