CmaCh00G000770 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G000770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr00: 4189260 .. 4192824 (+)
RNA-Seq ExpressionCmaCh00G000770
SyntenyCmaCh00G000770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCAGTAGGGCAAGTGAAACGAGATTTGTCAGGCTTAAGGTAAAGGGCATGAGAGAAAGAAAGTTCTTGTTTCCGCGCTCAACTATGGGAATAAGGGGAATAAGAGCTGGCGGTAAGTGAAGAAATTCCTTCTGGCAGTGGATGCTGGTGAATCAGAGTCAAATCTCTCTTTTCTTTCGGAAGCGAAGTCGTAACTTATACCGTTCGAAAGGCGCTACAGCCCTTATGGTTATAGATAAGGAGAAATAAATAGAACCGTTCGTTCTTTGCGGTTACAGATATGATCCAAAAGACATCATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTATTATAGGTTACAATTACATAATGGTTAATCATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTAACGGGCTTGAAAAATATAGTAAAAAGAAGCATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACGTGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAATCAAGCGTTCTTGTCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGTCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTCCCCTTGTAGTGGTTCCTTATCTTATCATTTGGTATCAGAGCTTAAGGCTCAAGATTGGATATATGTTTCCTTTGCATTTCTTTTCAATTTGTAAATCTTTTTAGTTTTTAATCGACCCAAAATAAATAAAAAAAAATCAAATATGGGCTCTACTAGAAAATTTGAGAGGTGAGGATGAGAGATTCGTTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGAAAAATGATATGAATCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTTCAATTCATGCCCCATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATACGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATGTTGTATGCGTAAGAGACTTGAAAAATATAGTAAAAAGAAACATTTGTGCTCTTCTGTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTCCCCTTGTAGTGGTTCCTTTTCTTATCATTTGGTATCAGAGCTTAAGGCTCAAGATCGGATATATGTTTCCTTTGCATTTCTTTTCAATTTGTTTTTATCTTTTTAGTTTTTAATCGACCCAAAATAAAAAAAAACAAATCTGGGCTCTACTAGAAAATTTGAGAGGTGAGGATGAGAGATTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTATGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGGAGAATGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATAGGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTAAGAGACTTGAAAAATATAGTAAAAAGAAGCATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGAAAGTGTTCTTACCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTTCCCTTGTAGTGGTTCCTTTTCTTATCATATTGCCACATCCCCAAGGATTAGGACCACTTTAGCTGGGTCAGTGTAATCTTTATGCTCACCCGATTCAAATAATCATTGATTTGGTACTGCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTTTCTCTGGGATTCTCCATCCGCAAAGTTGGATTAGCCCCCTTTTCCGTAGGTTATATATTGACTTATGCGGCTTTCTGCCTCTACATCAGGCTAATTTGGTTCATTTTGTATGTGTTGTATCCTATCAAATCTCATCTCTTTGGAGAAGGGGATCTTCTTTCTTATATTTCTACATCTAGGATCTGACTTGTATCATTGATACTACTAGGAATGGAATCATTATGGCAAGGAAAAGTGTAATAGGGAGAGGGAGAAGAAGAGGGCAAAATTGGACCGACGTAATAGTGACAATCCCCACCGCGTAATAGTGCACCCACACGTCTTCATCGACCGACGTTGTTTTTTCACCGGAAGACCGAGAGCTAACGATCGAGACTTTCTTTGGGCTATCTGGACACATACTGACTTATACTTCGGGAAATGGTTCATGCATGCTTGTTGCCTGGGAGAAGGAAGAAGATCAAGGATTCAAATAGCCCTTTCTATTCATTTCTATGATCACGACCCCCTTTCTTTCTTTCTTTACCATTCTCTGTATAAATCTTGACTATTCTATTTGTAAAGATATGGTTATAGGGGCACGCATTCAATCTTTCTTTGTCTATTAGTTCACAGTTCTTCTCTTCGCGGGCTGGAGCAGCTTGGTAG

mRNA sequence

ATGAAAGCAGTAGGGCAAGTGAAACGAGATTTGTCAGGCTTAAGGTTGCATGTAGAATCATTCAAGCTCGACGTGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAATCAAGCGTTCTTGTCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGTCTTGAGATATTCGATCAACAAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGAAAGTGTTCTTACCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGGGCACGCATTCAATCTTTCTTTGTCTATTAGTTCACAGTTCTTCTCTTCGCGGGCTGGAGCAGCTTGGTAG

Coding sequence (CDS)

ATGAAAGCAGTAGGGCAAGTGAAACGAGATTTGTCAGGCTTAAGGTTGCATGTAGAATCATTCAAGCTCGACGTGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAATCAAGCGTTCTTGTCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGTCTTGAGATATTCGATCAACAAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGAAAGTGTTCTTACCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGGGCACGCATTCAATCTTTCTTTGTCTATTAGTTCACAGTTCTTCTCTTCGCGGGCTGGAGCAGCTTGGTAG

Protein sequence

MKAVGQVKRDLSGLRLHVESFKLDVINLACGVIRISIKRSCLEIFDQQESFKLDMIDLACGVIRISNNVLVLRYSINKFRLHVESFKLDMINLACGVIRISWKCSCLEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKFRLHVESFKLDMINLACGVIRISRKCSYLEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKGHAFNLSLSISSQFFSSRAGAAW
Homology
[Close]
BLAST of CmaCh00G000770 vs. NCBI nr
Match: KAG7028064.1 (hypothetical protein SDJN02_09244, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 8.6e-21
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 0 

Query: 144 FRLHVESFKLDMINLACGVIRISRKCSYLEIFDQQESFKLDMIDLACGVIRISNNVLALR 203
           F+LHVESFKL+MINL CGVIRIS K   +EIFDQQESFKLDMIDLA GVI+ISNNVLALR
Sbjct: 3   FKLHVESFKLNMINLICGVIRISNKYFCIEIFDQQESFKLDMIDLASGVIQISNNVLALR 62

Query: 204 YSINKGHAFNLSLSISSQFFSS 226
           YSINKG  F L L +  +F ++
Sbjct: 63  YSINKGFLF-LGLVLFLEFVTA 83

The following BLAST results are available for this feature:
BLAST of CmaCh00G000770 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh00G000770 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh00G000770 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028064.18.6e-2173.17hypothetical protein SDJN02_09244, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh00G000770 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000770.1CmaCh00G000770.1mRNA