CmaCh00G000750 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000750
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II CP43 reaction center protein
Location	Cma_Chr00: 4118406 .. 4120195 (+)
RNA-Seq Expression	CmaCh00G000750
Synteny	CmaCh00G000750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGGATGGTGCAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGTTTTCCAATAAAAAAGGGGTTATTACATTTCTTTCTCTTATTTGTACCAGTAACTTCTTTATGGATGAGTGCTTGCTCTTGGAGTAGTAGTTAGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGAATGTTCTACCCCATGGAAACGCTCTTTAATGGAACTTTCTCTTTTGGAACTTTATCTTTAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGGCGGGCTCATGTAGCCCATGCCGGATTAATTGTATTCTGTTCTGGGCTGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTCAGAAGCCCATCTATGAACAAAGATCCATTTTCCTTCCCCGCCCGCCTAGTTACTACTCTAGGTTGGGGCGTAGGCACTGGTGGGTAAGTAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTGAATTTCCTCTATAGTATTGGGTTTTGACGGTATTTATCATGCACTTCTGGGACCCGATACCCTTGTTCTTTTCCATTCTTCCGTTATGTGTGGAAAGATAGAAAGCAAATGACTACTTGAGTATTCACTAAATTAGGTATAGGTTTCTTCTAGTATTCAAAGCTCCTGATTTGGGGGGCGTATATGATACCTAGGCTCCGTGGGGAGGAGATCTAAGATTAATTACCAACTTGAACCTTAGCCCAAGTGTGATATTTGGGTATTTACTCAAATCTCTTGGGGAGAGAGAAGGTTGGATTCTTAGTGTAGACGATTTGGAAGATATAGTTGGGGGGCATTTATGGTTAGTTAGGTTACATTTGTATACTTGGGGGAATTTAGCAGATCTTAACTAAACCGTTTGGCTCGCCGCGCACTTGTATGGTCTAGAGAAGCTTACTTGTCTGATAGTTTAGGTGCTTTATCCCGTTTTGGTTTTATTGCTTGTTCTTTTGTCTGGCTTGTTCTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTGAGTTTTAGGGGCCGACTGGACCCGAATCTTCTTAAGCTCAACCAACCGTTTACGTTTCTAGTTAGAGACCTCTTGTAGCTAACGTTGGATCAAGGACCTACTCTACTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCATAGAGAAAAGTCATTTTGAGGGGAGAGATAGAAAGAAAGAGACTATGTGCTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCAATAAGGGGTCCTAGTCGTTTGGACTTGAGTAGGCAAAGATATACAACCTTGGCAAGACCTTACGTAGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTACGAGGGTGGCGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCCATTTGTAGGTCATTTATGGCATGCAGGAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTCTGA

mRNA sequence

ATGGTGATGGATGGTGCAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGGCGGGCTCATGTAGCCCATGCCGGATTAATTGTATTCTGTTCTGGGCTGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTCAGAAGCCCATCTATGAACAAAGATCCATTTTCCTTCCCCGCCCGCCTAGTTACTACTCTAGGTTGGGGCGTAGGCACTGGTGGGCTCCGTGGGGAGGAGATCTAAGATTAATTACCAACTTGAACCTTAGCCCAAGTGTGATATTTGGGTATTTACTCAAATCTCTTGGGGAGAGAGAAGGTTGGATTCTTAGTGTAGACGATTTGGAAGATATAGTTGGGGGGCATTTATGGTGCTTTATCCCGTTTTGGTTTTATTGCTTGTTCTTTTGTCTGGCTTGTTCTTTTGTCTGGTTCAATAATACTGCTTATCCGACTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCCATTTGTAGGTCATTTATGGCATGCAGGAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTCTGA

Coding sequence (CDS)

ATGGTGATGGATGGTGCAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGGCGGGCTCATGTAGCCCATGCCGGATTAATTGTATTCTGTTCTGGGCTGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTCAGAAGCCCATCTATGAACAAAGATCCATTTTCCTTCCCCGCCCGCCTAGTTACTACTCTAGGTTGGGGCGTAGGCACTGGTGGGCTCCGTGGGGAGGAGATCTAAGATTAATTACCAACTTGAACCTTAGCCCAAGTGTGATATTTGGGTATTTACTCAAATCTCTTGGGGAGAGAGAAGGTTGGATTCTTAGTGTAGACGATTTGGAAGATATAGTTGGGGGGCATTTATGGTGCTTTATCCCGTTTTGGTTTTATTGCTTGTTCTTTTGTCTGGCTTGTTCTTTTGTCTGGTTCAATAATACTGCTTATCCGACTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCCATTTGTAGGTCATTTATGGCATGCAGGAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTCTGA

Protein sequence

MVMDGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRPPSYYSRLGRRHWWAPWGGDLRLITNLNLSPSVIFGYLLKSLGEREGWILSVDDLEDIVGGHLWCFIPFWFYCLFFCLACSFVWFNNTAYPTTEINAVNYVSPRSWLVTSHFLLGFPPFVGHLWHAGGLGQLPQDLKKELIDL

Homology

[Close]

BLAST of CmaCh00G000750 vs. ExPASy Swiss-Prot
Match: Q3BAP4 (Photosystem II CP43 reaction center protein OS=Phalaenopsis aphrodite subsp. formosana OX=308872 GN=psbC PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-36
Identity = 134/427 (31.38%), Postives = 152/427 (35.60%), Query Frame = 0


Query: 36  LVVTKKQPPGF---GGNARLIHLYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQK 95
           LV   ++  GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVP+K
Sbjct: 23  LVGRDQETTGFAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEK 82

Query: 96  PIYEQRSIFLPRPPS------------------------------------YYSRLGRRH 155
           P+YEQ  I LP   +                                    Y++ LG   
Sbjct: 83  PMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPET 142

Query: 156 -----------W-------------------------------------WAPWGGDLRLI 215
                      W                                     WAP GGD+R I
Sbjct: 143 LEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVLKALYFGGVYDTWAPGGGDVRKI 202

Query: 216 TNLNLSPSVIFGYLLKSLGEREGWILSVDDLEDIVGGHLW----CFI---------PF-- 232
           TNL LSPSVIFGYLLKS    EGWI+SVDDLEDI+GGH+W    C +         PF  
Sbjct: 203 TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAW 262

[Close]

BLAST of CmaCh00G000750 vs. ExPASy Swiss-Prot
Match: P10804 (Photosystem II CP43 reaction center protein OS=Secale cereale OX=4550 GN=psbC PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-36
Identity = 137/429 (31.93%), Postives = 153/429 (35.66%), Query Frame = 0


Query: 34  FELVVTKKQPPGF---GGNARLIHLYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVP 93
           F L    ++  GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVP
Sbjct: 21  FVLAGRDQETTGFAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVP 80

Query: 94  QKPIYEQRSIFLPRPPS------------------------------------YYSRLGR 153
           +KP+YEQ  I LP   +                                    Y++ LG 
Sbjct: 81  EKPMYEQGLILLPHLATLGWGVGPGGEVLDTFPYFVSGVLHLISSAVLGFGGIYHALLGP 140

Query: 154 RH-----------W-------------------------------------WAPWGGDLR 213
                        W                                     WAP GGD+R
Sbjct: 141 ETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVLKALYFGGVYDTWAPGGGDVR 200

Query: 214 LITNLNLSPSVIFGYLLKSLGEREGWILSVDDLEDIVGGHLWC-FI------------PF 232
            ITNL LSPSVIFGYLLKS    EGWI+SVDDLEDI+GGH+W  FI            PF
Sbjct: 201 KITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGFICVFGGIWHILTKPF 260

[Close]

BLAST of CmaCh00G000750 vs. ExPASy Swiss-Prot
Match: Q70Y07 (Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=psbC PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.8e-36
Identity = 130/414 (31.40%), Postives = 147/414 (35.51%), Query Frame = 0


Query: 46  FGGNARLIHLYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRP 105
           + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP  
Sbjct: 36  WAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHL 95

Query: 106 PS------------------------------------YYSRLGRRH-----------W- 165
            +                                    Y++ LG              W 
Sbjct: 96  ATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWK 155

Query: 166 ------------------------------------WAPWGGDLRLITNLNLSPSVIFGY 225
                                               WAP GGD+R ITNL LSPSVIFGY
Sbjct: 156 DRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGY 215

Query: 226 LLKSLGEREGWILSVDDLEDIVGGHLW----CFI---------PF--------W------ 232
           LLKS    EGWI+SVDDLEDI+GGH+W    C +         PF        W      
Sbjct: 216 LLKSPFGGEGWIVSVDDLEDIIGGHVWLGFICILGGIWHILTKPFAWARRAFVWSGEAYL 275

[Close]

BLAST of CmaCh00G000750 vs. ExPASy Swiss-Prot
Match: A6MM32 (Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=psbC PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.8e-36
Identity = 130/414 (31.40%), Postives = 147/414 (35.51%), Query Frame = 0


Query: 46  FGGNARLIHLYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRP 105
           + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP  
Sbjct: 36  WAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHL 95

Query: 106 PS------------------------------------YYSRLGRRH-----------W- 165
            +                                    Y++ LG              W 
Sbjct: 96  ATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWK 155

Query: 166 ------------------------------------WAPWGGDLRLITNLNLSPSVIFGY 225
                                               WAP GGD+R ITNL LSPSVIFGY
Sbjct: 156 DRNKMTTILGIHLILLGIGAFLLVLKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGY 215

Query: 226 LLKSLGEREGWILSVDDLEDIVGGHLW----CFI---------PF--------W------ 232
           LLKS    EGWI+SVDDLEDI+GGH+W    C +         PF        W      
Sbjct: 216 LLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIVGGIWHILTKPFAWARRALVWSGEAYL 275

[Close]

BLAST of CmaCh00G000750 vs. ExPASy Swiss-Prot
Match: A8SE99 (Photosystem II CP43 reaction center protein OS=Ceratophyllum demersum OX=4428 GN=psbC PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.8e-36
Identity = 130/414 (31.40%), Postives = 147/414 (35.51%), Query Frame = 0


Query: 46  FGGNARLIHLYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRP 105
           + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP  
Sbjct: 24  WAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHL 83

Query: 106 PS------------------------------------YYSRLGRRH-----------W- 165
            +                                    Y++ LG              W 
Sbjct: 84  ATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWK 143

Query: 166 ------------------------------------WAPWGGDLRLITNLNLSPSVIFGY 225
                                               WAP GGD+R ITNL LSPSVIFGY
Sbjct: 144 DRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGY 203

Query: 226 LLKSLGEREGWILSVDDLEDIVGGHLW----CFI---------PF--------W------ 232
           LLKS    EGWI+SVDDLEDI+GGH+W    C +         PF        W      
Sbjct: 204 LLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRAFVWSGEAYL 263

[Close]

BLAST of CmaCh00G000750 vs. ExPASy TrEMBL
Match: A0A3P6H6D7 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC45T60872H PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 165/510 (32.35%), Postives = 185/510 (36.27%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKK---------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF +  + K                      
Sbjct: 122 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 181

Query: 64  --------------------------------------------QPPGF---GGNARLIH 123
                                                       +  GF    GNARLI+
Sbjct: 182 VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLIN 241

Query: 124 LYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRPPS------- 183
           L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP   +       
Sbjct: 242 LSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGP 301

Query: 184 -----------------------------YYSRLGRRH-----------W---------- 243
                                        Y++ LG              W          
Sbjct: 302 GGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTIL 361

Query: 244 ---------------------------WAPWGGDLRLITNLNLSPSVIFGYLLKSLGERE 246
                                      WAP GGD+R ITNL LSPSVIFGYLLKS    E
Sbjct: 362 GIHLILLGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGE 421

[Close]

BLAST of CmaCh00G000750 vs. ExPASy TrEMBL
Match: A0A078EKT7 (BnaC05g32120D protein OS=Brassica napus OX=3708 GN=BnaC05g32120D PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 156/495 (31.52%), Postives = 176/495 (35.56%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKK---------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF +  + K                      
Sbjct: 116 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 175

Query: 64  --------------------------------------------QPPGF---GGNARLIH 123
                                                       +  GF    GNARLI+
Sbjct: 176 VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLIN 235

Query: 124 LYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRPPS------- 183
           L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP   +       
Sbjct: 236 LSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGP 295

Query: 184 -----------------------------YYSRLGRRH-----------W---------- 232
                                        Y++ LG              W          
Sbjct: 296 GGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTIL 355

[Close]

BLAST of CmaCh00G000750 vs. ExPASy TrEMBL
Match: A0A0D3CFB6 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 156/495 (31.52%), Postives = 176/495 (35.56%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKK---------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF +  + K                      
Sbjct: 30  DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 89

Query: 64  --------------------------------------------QPPGF---GGNARLIH 123
                                                       +  GF    GNARLI+
Sbjct: 90  VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLIN 149

Query: 124 LYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRPPS------- 183
           L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP   +       
Sbjct: 150 LSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGP 209

Query: 184 -----------------------------YYSRLGRRH-----------W---------- 232
                                        Y++ LG              W          
Sbjct: 210 GGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTIL 269

[Close]

BLAST of CmaCh00G000750 vs. ExPASy TrEMBL
Match: A0A078HPI2 (BnaC03g60960D protein OS=Brassica napus OX=3708 GN=BnaC03g60960D PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 156/495 (31.52%), Postives = 176/495 (35.56%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKK---------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF +  + K                      
Sbjct: 122 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 181

Query: 64  --------------------------------------------QPPGF---GGNARLIH 123
                                                       +  GF    GNARLI+
Sbjct: 182 VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLIN 241

Query: 124 LYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRPPS------- 183
           L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP   +       
Sbjct: 242 LSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGP 301

Query: 184 -----------------------------YYSRLGRRH-----------W---------- 232
                                        Y++ LG              W          
Sbjct: 302 GGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTIL 361

[Close]

BLAST of CmaCh00G000750 vs. ExPASy TrEMBL
Match: A0A3P6DR44 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC140T45604Z PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 156/495 (31.52%), Postives = 176/495 (35.56%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKK---------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF +  + K                      
Sbjct: 122 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 181

Query: 64  --------------------------------------------QPPGF---GGNARLIH 123
                                                       +  GF    GNARLI+
Sbjct: 182 VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLIN 241

Query: 124 LYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRPPS------- 183
           L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP   +       
Sbjct: 242 LSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGP 301

Query: 184 -----------------------------YYSRLGRRH-----------W---------- 232
                                        Y++ LG              W          
Sbjct: 302 GGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTIL 361

[Close]

BLAST of CmaCh00G000750 vs. NCBI nr
Match: VDD65644.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-48
Identity = 165/510 (32.35%), Postives = 185/510 (36.27%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKK---------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF +  + K                      
Sbjct: 122 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 181

Query: 64  --------------------------------------------QPPGF---GGNARLIH 123
                                                       +  GF    GNARLI+
Sbjct: 182 VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLIN 241

Query: 124 LYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRPPS------- 183
           L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP   +       
Sbjct: 242 LSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGP 301

Query: 184 -----------------------------YYSRLGRRH-----------W---------- 243
                                        Y++ LG              W          
Sbjct: 302 GGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTIL 361

Query: 244 ---------------------------WAPWGGDLRLITNLNLSPSVIFGYLLKSLGERE 246
                                      WAP GGD+R ITNL LSPSVIFGYLLKS    E
Sbjct: 362 GIHLILLGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGE 421

[Close]

BLAST of CmaCh00G000750 vs. NCBI nr
Match: KAG2275614.1 (hypothetical protein Bca52824_058169 [Brassica carinata])

HSP 1 Score: 198.4 bits (503), Expect = 7.4e-47
Identity = 155/459 (33.77%), Postives = 173/459 (37.69%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIF----------------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF                             
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVFALGWRLKISLMKTLYSLRRFYHVETL 287

Query: 64  -----ELVVTKKQPPGF---GGNARLIHLYGKLLGAGSCSPCRINCILFWAGAMNLFEVA 123
                 L    ++  GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVA
Sbjct: 288 FNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVA 347

Query: 124 HFVPQKPIYEQRSIFLPRP-----------------PSYYSRL----------------- 183
           HFVP+KP+YEQ  I LP                   P + S +                 
Sbjct: 348 HFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGDRNKM 407

Query: 184 --------------------------GRRHWWAPWGGDLRLITNLNLSPSVIFGYLLKSL 232
                                     G    WAP GGD+R ITNL LSPSVIFGYLLKS 
Sbjct: 408 TTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSP 467

[Close]

BLAST of CmaCh00G000750 vs. NCBI nr
Match: KAG2251033.1 (hypothetical protein Bca52824_081169 [Brassica carinata])

HSP 1 Score: 196.4 bits (498), Expect = 2.8e-46
Identity = 153/462 (33.12%), Postives = 172/462 (37.23%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIF----------------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF                             
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVFALGWRLKISLMKTLYSLRRFYHVETL 287

Query: 64  -----ELVVTKKQPPGF---GGNARLIHLYGKLLGAGSCSPCRINCILFWAGAMNLFEVA 123
                 L    ++  GF    GNARLI+L  KLLGA          I+FWAGAMNLFEVA
Sbjct: 288 FNGTLALAGRDQETTGFAWWAGNARLINLSSKLLGA---HVAHAGLIVFWAGAMNLFEVA 347

Query: 124 HFVPQKPIYEQRSIFLPRPPS------------------------------------YYS 183
           HFVP+KP+YEQ  I LP   +                                    Y++
Sbjct: 348 HFVPEKPMYEQGLILLPHLATLGWGVGHGGEVIDTFPYFVSGVLHLLSFAVLGFGGIYHA 407

Query: 184 RLGRR---------------------------HWWAPWGGDLRLITNLNLSPSVIFGYLL 232
            LG                               WAP GGD+R ITNL L PSVIFGYLL
Sbjct: 408 LLGPETLEESFPFFGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLCPSVIFGYLL 467

[Close]

BLAST of CmaCh00G000750 vs. NCBI nr
Match: CDY29457.1 (BnaC05g32130D [Brassica napus] >CDY29458.1 BnaC05g32120D [Brassica napus])

HSP 1 Score: 188.7 bits (478), Expect = 5.9e-44
Identity = 156/495 (31.52%), Postives = 176/495 (35.56%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKK---------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF +  + K                      
Sbjct: 116 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 175

Query: 64  --------------------------------------------QPPGF---GGNARLIH 123
                                                       +  GF    GNARLI+
Sbjct: 176 VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLIN 235

Query: 124 LYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRPPS------- 183
           L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP   +       
Sbjct: 236 LSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGP 295

Query: 184 -----------------------------YYSRLGRRH-----------W---------- 232
                                        Y++ LG              W          
Sbjct: 296 GGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTIL 355

[Close]

BLAST of CmaCh00G000750 vs. NCBI nr
Match: VDD26495.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 188.7 bits (478), Expect = 5.9e-44
Identity = 156/495 (31.52%), Postives = 176/495 (35.56%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKK---------------------- 63
           DGAN F   NPTQAEETYSMVTANRFW QIF +  + K                      
Sbjct: 30  DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 89

Query: 64  --------------------------------------------QPPGF---GGNARLIH 123
                                                       +  GF    GNARLI+
Sbjct: 90  VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLIN 149

Query: 124 LYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRPPS------- 183
           L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP   +       
Sbjct: 150 LSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGP 209

Query: 184 -----------------------------YYSRLGRRH-----------W---------- 232
                                        Y++ LG              W          
Sbjct: 210 GGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTIL 269

[Close]

BLAST of CmaCh00G000750 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-37
Identity = 127/414 (30.68%), Postives = 145/414 (35.02%), Query Frame = 0


Query: 46  FGGNARLIHLYGKLLGAGSCSPCRINCILFWAGAMNLFEVAHFVPQKPIYEQRSIFLPRP 105
           + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVP+KP+YEQ  I LP  
Sbjct: 36  WAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHL 95

Query: 106 PS------------------------------------YYSRLGRRH-----------W- 165
            +                                    Y++ LG              W 
Sbjct: 96  ATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWK 155

Query: 166 ------------------------------------WAPWGGDLRLITNLNLSPSVIFGY 225
                                               WAP GGD+R ITNL LSPSVIFGY
Sbjct: 156 DRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGY 215

Query: 226 LLKSLGEREGWILSVDDLEDIVGGHLW------------------------------CFI 232
           LLKS    EGWI+SVDDLEDI+GGH+W                               ++
Sbjct: 216 LLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKPFAWARRALVWSGEAYL 275

[Close]

BLAST of CmaCh00G000750 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-09
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 4   DGANRFLPGNPTQAEETYSMVTANRFWYQIFELVVTKKQ 43
           DGAN F   NPTQAEETYSMVTANRFW QIF +  + K+
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKR 266

The following BLAST results are available for this feature:

BLAST of CmaCh00G000750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3BAP4	1.6e-36	31.38	Photosystem II CP43 reaction center protein OS=Phalaenopsis aphrodite subsp. for...	[more]
P10804	2.1e-36	31.93	Photosystem II CP43 reaction center protein OS=Secale cereale OX=4550 GN=psbC PE...	[more]
Q70Y07	2.8e-36	31.40	Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=...	[more]
A6MM32	2.8e-36	31.40	Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=ps...	[more]
A8SE99	2.8e-36	31.40	Photosystem II CP43 reaction center protein OS=Ceratophyllum demersum OX=4428 GN...	[more]

BLAST of CmaCh00G000750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3P6H6D7	1.5e-48	32.35	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC45T60872H PE=3 SV=1	[more]
A0A078EKT7	2.8e-44	31.52	BnaC05g32120D protein OS=Brassica napus OX=3708 GN=BnaC05g32120D PE=3 SV=1	[more]
A0A0D3CFB6	2.8e-44	31.52	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1	[more]
A0A078HPI2	2.8e-44	31.52	BnaC03g60960D protein OS=Brassica napus OX=3708 GN=BnaC03g60960D PE=3 SV=1	[more]
A0A3P6DR44	2.8e-44	31.52	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC140T45604Z PE=3 S...	[more]

BLAST of CmaCh00G000750 vs. NCBI nr


Match Name	E-value	Identity	Description
VDD65644.1	3.0e-48	32.35	unnamed protein product [Brassica oleracea]	[more]
KAG2275614.1	7.4e-47	33.77	hypothetical protein Bca52824_058169 [Brassica carinata]	[more]
KAG2251033.1	2.8e-46	33.12	hypothetical protein Bca52824_081169 [Brassica carinata]	[more]
CDY29457.1	5.9e-44	31.52	BnaC05g32130D [Brassica napus] >CDY29458.1 BnaC05g32120D [Brassica napus]	[more]
VDD26495.1	5.9e-44	31.52	unnamed protein product [Brassica rapa]	[more]

BLAST of CmaCh00G000750 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	3.3e-37	30.68	photosystem II reaction center protein C	[more]
ATCG00270.1	3.8e-09	69.23	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 196..231 e-value: 7.3E-9 score: 34.8 coord: 46..116 e-value: 7.5E-9 score: 34.8
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 48..172
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 197..231
None	No IPR available	PANTHER	PTHR33180:SF7	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 197..231 coord: 48..172
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 46..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000750.1	CmaCh00G000750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009521	photosystem
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding