CmaCh00G000670 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G000670
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPhotosystem II D2 protein
LocationCma_Chr00: 3285772 .. 3286179 (+)
RNA-Seq ExpressionCmaCh00G000670
SyntenyCmaCh00G000670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGGATGGTGCAAATAGATTCCTTCCAGGTAACCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAAACTGCTTTTGGTACCAAATCTTTTGAGGTTTTCCAATAAAAAAGGGATTATTACATTTCTTTCTCTTATTTGTACCAGTAACTGCTTTATGGATGAGTGCTTGCTCTTGGAGTAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCATTGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGGAGGTTCTACCGCGTGGAAACGCTCTTTAA

mRNA sequence

ATGGTGATGGATGGTGCAAATAGATTCCTTCCAGGAAATCCATTGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGGAGGTTCTACCGCGTGGAAACGCTCTTTAA

Coding sequence (CDS)

ATGGTGATGGATGGTGCAAATAGATTCCTTCCAGGAAATCCATTGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGGAGGTTCTACCGCGTGGAAACGCTCTTTAA

Protein sequence

MVMDGANRFLPGNPLEDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL
Homology
[Close]
BLAST of CmaCh00G000670 vs. ExPASy Swiss-Prot
Match: A8SE98 (Photosystem II D2 protein OS=Ceratophyllum demersum OX=4428 GN=psbD PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.2e-16
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. ExPASy Swiss-Prot
Match: Q9MUW2 (Photosystem II D2 protein OS=Mesostigma viride OX=41882 GN=psbD PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.3e-16
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+NLLL EGIR WMAAQDQPHEN   L+ PEEVLPRGNAL
Sbjct: 309 EDPEFETF--YTKNLLLNEGIRAWMAAQDQPHEN---LVFPEEVLPRGNAL 354

[Close]
BLAST of CmaCh00G000670 vs. ExPASy Swiss-Prot
Match: Q4FFP4 (Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-15
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. ExPASy Swiss-Prot
Match: Q3V539 (Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-15
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. ExPASy Swiss-Prot
Match: A4QJB0 (Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-15
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. ExPASy TrEMBL
Match: A0A0S0ZJN6 (Photosystem II D2 protein (Fragment) OS=Pyrenacantha thomsoniana OX=124959 GN=psbD PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LILPEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNILLNEGIRAWMAAQDQPHEN---LILPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. ExPASy TrEMBL
Match: C3KEG2 (Photosystem II D2 protein OS=Ceratophyllum demersum OX=4428 GN=psbD PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.6e-13
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. ExPASy TrEMBL
Match: Q9GFG2 (Photosystem II D2 protein (Fragment) OS=Ceratophyllum demersum OX=4428 GN=psbD PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.6e-13
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 280 EDPEFETF--YTKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 325

[Close]
BLAST of CmaCh00G000670 vs. ExPASy TrEMBL
Match: A0A287Q7T4 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.6e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 14  PLEDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           P+EDPEFETF  YT+ +LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 79  PVEDPEFETF--YTKKILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 126

[Close]
BLAST of CmaCh00G000670 vs. ExPASy TrEMBL
Match: A0A7S4X542 (Photosystem II protein D OS=Mesostigma viride OX=41882 GN=PSBD PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.5e-13
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+NLLL EGIR WMAAQDQPHEN   L+ PEEVLPRGNAL
Sbjct: 309 EDPEFETF--YTKNLLLNEGIRAWMAAQDQPHEN---LVFPEEVLPRGNAL 354

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: ALI90641.1 (PsbD, partial [Pyrenacantha thomsoniana])

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LILPEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNILLNEGIRAWMAAQDQPHEN---LILPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: AAG26169.1 (photosystem II D2 protein, partial [Ceratophyllum demersum])

HSP 1 Score: 84.0 bits (206), Expect = 5.5e-13
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 280 EDPEFETF--YTKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 325

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: YP_001542442.1 (photosystem II protein D2 [Ceratophyllum demersum] >A8SE98.1 RecName: Full=Photosystem II D2 protein; Short=PSII D2 protein; AltName: Full=Photosystem Q(A) protein [Ceratophyllum demersum] >ABQ81445.1 photosystem II protein D2 [Ceratophyllum demersum] >CAP62493.1 PSII D2 protein [Ceratophyllum demersum])

HSP 1 Score: 84.0 bits (206), Expect = 5.5e-13
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: NP_038348.1 (photosystem II protein D2 [Mesostigma viride] >Q9MUW2.1 RecName: Full=Photosystem II D2 protein; Short=PSII D2 protein; AltName: Full=Photosystem Q(A) protein [Mesostigma viride] >AAF43789.1 D2 reaction center protein of photosystem II [Mesostigma viride])

HSP 1 Score: 83.6 bits (205), Expect = 7.1e-13
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+NLLL EGIR WMAAQDQPHEN   L+ PEEVLPRGNAL
Sbjct: 309 EDPEFETF--YTKNLLLNEGIRAWMAAQDQPHEN---LVFPEEVLPRGNAL 354

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: YP_009403408.1 (photosystem II protein D2 [Downingia cuspidata] >ASA34601.1 photosystem II protein D2 [Downingia cuspidata])

HSP 1 Score: 83.6 bits (205), Expect = 7.1e-13
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+N+LL EGIR+WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNILLNEGIRSWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 83.2 bits (204), Expect = 8.7e-17
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETF--YTKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

The following BLAST results are available for this feature:
BLAST of CmaCh00G000670 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A8SE987.2e-1682.35Photosystem II D2 protein OS=Ceratophyllum demersum OX=4428 GN=psbD PE=3 SV=1[more]
Q9MUW29.3e-1680.39Photosystem II D2 protein OS=Mesostigma viride OX=41882 GN=psbD PE=3 SV=1[more]
Q4FFP41.2e-1580.39Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1[more]
Q3V5391.2e-1580.39Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1[more]
A4QJB01.2e-1580.39Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1[more]
BLAST of CmaCh00G000670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0S0ZJN61.5e-1382.35Photosystem II D2 protein (Fragment) OS=Pyrenacantha thomsoniana OX=124959 GN=ps... [more]
C3KEG22.6e-1382.35Photosystem II D2 protein OS=Ceratophyllum demersum OX=4428 GN=psbD PE=3 SV=1[more]
Q9GFG22.6e-1382.35Photosystem II D2 protein (Fragment) OS=Ceratophyllum demersum OX=4428 GN=psbD P... [more]
A0A287Q7T42.6e-1377.36Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1[more]
A0A7S4X5423.5e-1380.39Photosystem II protein D OS=Mesostigma viride OX=41882 GN=PSBD PE=2 SV=1[more]
BLAST of CmaCh00G000670 vs. NCBI nr
Match NameE-valueIdentityDescription
ALI90641.13.2e-1382.35PsbD, partial [Pyrenacantha thomsoniana][more]
AAG26169.15.5e-1382.35photosystem II D2 protein, partial [Ceratophyllum demersum][more]
YP_001542442.15.5e-1382.35photosystem II protein D2 [Ceratophyllum demersum] >A8SE98.1 RecName: Full=Photo... [more]
NP_038348.17.1e-1380.39photosystem II protein D2 [Mesostigma viride] >Q9MUW2.1 RecName: Full=Photosyste... [more]
YP_009403408.17.1e-1380.39photosystem II protein D2 [Downingia cuspidata] >ASA34601.1 photosystem II prote... [more]
BLAST of CmaCh00G000670 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00270.18.7e-1780.39photosystem II reaction center protein D [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000670.1CmaCh00G000670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0010242 oxygen evolving activity