CmaCh00G000660 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G000660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPhotosystem II D2 protein
LocationCma_Chr00: 3238702 .. 3240840 (+)
RNA-Seq ExpressionCmaCh00G000660
SyntenyCmaCh00G000660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGCCCCCCGCACACCGAGATCGGGGCAAGGGGAAAGCTTATTCGTTTGAGATCCTTGGCGCGACTTGCGCCGGTTTTGGTTTGGGCATCAGAGGGTGCACGAATGCTCCCCCCGACACAAAAAAGTTCGTAAACACGTTCGCGGGTCGTTTGATGTTTAGGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTATTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTCGCGACGTCGCAGGCAGCGAACCGCCCACGTCGCCACGATCCGAACACTTCACCGGACCATATGCTAAGAATATCCTCAAGTATCTTAGGAGAACGAGAGACTATATGCTAATGTACGGTGCTAAGGATTTGAAACTTACAGGGTACACTGACTCAGATTTTTAGATTGATGTAGATTCGAGGAAATCAACATTAGGATCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTGATTCCACCATGGAGGTTGAGTATGTTGCTTCTTGTGAAGCAACGAAAGAATCTGTATGGCTTAGAAAGTTCTAAACTGATTTGGAAGTCGTTCCAAATATGCATCTTCCCGTCACTCTTTATTCTGATAACAGTGGAGCAGTTGCAAATTCAAAAGAATCAAGAAGCCATAAGCGAGGGAAACATATTTAGCGCAAATATAATCTAATAAGGGAGATTGTGCAACAAGGAGATGTGATCGTCACACAGATAGCTTCAGAGCACAACATTGTTGAACCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGGAAAGTGGGAGAAAAGGCATGAGTATGTGATGCCCTAGTTTATTGTATTTATGTCTTTCTCTCTGCTCAACGTTATAAAACCCCACTAGAGTTTTAGTCCAAGTGGGAGTTTGTTGGGTTTTATGTCCTAAAACTCATAGTTTGTAAACAAAAACATATTCTATTTTCAATAAAGTTATTATTGTTGTTTATTCAATAAAGATTGTTATTGAATAAAGTGAACTTTACGATCATTAATCTAAATTCAATAAACTAAGAACATTATGGCTATAGTATGATTACTTGAACTATTTGCTGCTCTGGTAAACGAAGAGAATGGAAGAAGAAGACATAGAATCAGATATATTCCTATAGAGTCAATTCATTAGCTACTTCTCCTATTTAGCTTATTCATTCAATCCTGTAATAGAAAGCAAGACAAGATTTATTCGGCGAAACAGGACTATTACTTCTGAGCTCAATGACTTGTCCCTTTAAACACTCCATACGTAACCTTTTCCGATATATATGACTGACCTTACCTTGCCTTTCTAGCTTTAGCATTGTTTGTTTTATTCCCTGATTGACCAGTAAATACTCTCAAGATTAATGATCTTGAATACGAAACCTCTATAACTATCTGCTTCTCTCCTGTCCCTATGTCTTTCTATTGGTCGACCAGCATGCTTCGCTCTGTAACCTTAGCTTCTATCTATTATTTTACCTGATCTACACCCCGATATGACCTTAACTTTCCAGTCGATTAAATGAATGAAGAAGAAATGAATTAGCAGCTTTGAAAGACGAAACTAAAGATGAATTCTCCAGTAGTGTTTGAATAAATTCAGGAATAATTCTCCTGACCCTACTTTACCTTTACAGTTGAGTAAATCAATTAAAGCTCCTTTCTTTACAGTTCAAGAAAGAGTCAATTCATTAGCTACAGATTAGTTTGTTCTATCAAAGAGTGAAACCTGAACCTGAACCATAGTGGGGCTCTTCTACAGATTAGTTTGTTTCTCAGGAAATCCGTTGGAAGATCCTGAATTGAGACTTTCTATCTATACACCCAAAATATTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGGAGGTTCTACCCTGTGGAAACGCTCTTTAATGGAACTTTCTCTTTTGAAACTTTATCTTTAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGCGGGCTATGTAG

mRNA sequence

ATGCTTTGCCCCCCGCACACCGAGATCGGGGCAAGGGGAAAGCTTATTCGTTTGAGATCCTTGGCGCGACTTGCGCCGGTTTTGGTTTGGGCATCAGAGGGTGCACGAATGCTCCCCCCGACACAAAAAAGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGGAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGCGGGCTATGTAG

Coding sequence (CDS)

ATGCTTTGCCCCCCGCACACCGAGATCGGGGCAAGGGGAAAGCTTATTCGTTTGAGATCCTTGGCGCGACTTGCGCCGGTTTTGGTTTGGGCATCAGAGGGTGCACGAATGCTCCCCCCGACACAAAAAAGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGGAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGCGGGCTATGTAG

Protein sequence

MLCPPHTEIGARGKLIRLRSLARLAPVLVWASEGARMLPPTQKRIRTWMAAQDQPHENTPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGRAM
Homology
[Close]
BLAST of CmaCh00G000660 vs. ExPASy TrEMBL
Match: A0A0E0NEA4 (Photosystem II D2 protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 35/61 (57.38%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 43  KRIRTWMAAQDQPHENTPYLILPEELVVTKKQPPG----------FGGNARLIHLYGKLL 94
           K IR WMAAQDQPHEN   LI PEE+     QPPG          + GNARLI+L GKLL
Sbjct: 324 KGIRAWMAAQDQPHEN---LIFPEEV-----QPPGHDQETTGFAWWAGNARLINLSGKLL 376

[Close]
BLAST of CmaCh00G000660 vs. ExPASy TrEMBL
Match: A0A1Y3BUR5 (Multifunctional fusion protein OS=Helianthus annuus OX=4232 GN=psbD PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 45  IRTWMAAQDQPHENTPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLG 94
           IR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLG
Sbjct: 326 IRAWMAAQDQPHEN---LIFPEEVLPQTTGFAWWAGNARLINLSGKLLG 371

[Close]
BLAST of CmaCh00G000660 vs. ExPASy TrEMBL
Match: A0A6A4R8H7 (Photosystem II D2 protein OS=Lupinus albus OX=3870 GN=Lalb_Chr01g0015021 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 45  IRTWMAAQDQPHENTPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLG 94
           IR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLG
Sbjct: 326 IRAWMAAQDQPHEN---LIFPEEVLPQTTGFAWWAGNARLINLSGKLLG 371

[Close]
BLAST of CmaCh00G000660 vs. ExPASy TrEMBL
Match: A0A396I4M6 (Photosystem II D2 protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0016581 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 45  IRTWMAAQDQPHENTPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLG 94
           IR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLG
Sbjct: 326 IRAWMAAQDQPHEN---LIFPEEVLPQTTGFAWWAGNARLINLSGKLLG 371

[Close]
BLAST of CmaCh00G000660 vs. ExPASy TrEMBL
Match: A0A251UW90 (Photosystem II D2 protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0099321 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 45  IRTWMAAQDQPHENTPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLG 94
           IR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLG
Sbjct: 326 IRAWMAAQDQPHEN---LIFPEEVLPQTTGFAWWAGNARLINLSGKLLG 371

[Close]
BLAST of CmaCh00G000660 vs. NCBI nr
Match: RHN59703.1 (putative photosystem II [Medicago truncatula])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 45  IRTWMAAQDQPHENTPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLG 94
           IR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLG
Sbjct: 326 IRAWMAAQDQPHEN---LIFPEEVLPQTTGFAWWAGNARLINLSGKLLG 371

[Close]
BLAST of CmaCh00G000660 vs. NCBI nr
Match: TKY66322.1 (Photosystem II D2 protein [Spatholobus suberectus])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 45  IRTWMAAQDQPHENTPYLILPEELVVTKKQ-PPGF---GGNARLIHLYGKLLG 94
           IR WMAAQDQPHEN   LI PEE++  + Q   GF    GNARLI+L GKLLG
Sbjct: 315 IRAWMAAQDQPHEN---LIFPEEVLPRRDQETTGFAWWAGNARLINLSGKLLG 364

[Close]
BLAST of CmaCh00G000660 vs. NCBI nr
Match: XP_042528145.1 (photosystem II CP43 reaction center protein [Dipodomys spectabilis])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 45  IRTWMAAQDQPHENTPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLG 94
           IR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLG
Sbjct: 326 IRAWMAAQDQPHEN---LIFPEEVLPQTTGFAWWAGNARLINLSGKLLG 371

[Close]
BLAST of CmaCh00G000660 vs. NCBI nr
Match: KAF5753227.1 (putative photosystem II [Helianthus annuus])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 45  IRTWMAAQDQPHENTPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLG 94
           IR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLG
Sbjct: 326 IRAWMAAQDQPHEN---LIFPEEVLPQTTGFAWWAGNARLINLSGKLLG 371

[Close]
BLAST of CmaCh00G000660 vs. NCBI nr
Match: XP_028096441.1 (uncharacterized protein LOC114296337 [Camellia sinensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 45  IRTWMAAQDQPHENTPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLG 94
           IR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLG
Sbjct: 326 IRAWMAAQDQPHEN---LIFPEEVLPQTTGFAWWAGNARLINLSGKLLG 371

The following BLAST results are available for this feature:
BLAST of CmaCh00G000660 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh00G000660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0E0NEA42.3e-0557.38Photosystem II D2 protein OS=Oryza rufipogon OX=4529 PE=3 SV=1[more]
A0A1Y3BUR55.0e-0561.22Multifunctional fusion protein OS=Helianthus annuus OX=4232 GN=psbD PE=3 SV=1[more]
A0A6A4R8H75.0e-0561.22Photosystem II D2 protein OS=Lupinus albus OX=3870 GN=Lalb_Chr01g0015021 PE=3 SV... [more]
A0A396I4M65.0e-0561.22Photosystem II D2 protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g001658... [more]
A0A251UW905.0e-0561.22Photosystem II D2 protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0099321 ... [more]
BLAST of CmaCh00G000660 vs. NCBI nr
Match NameE-valueIdentityDescription
RHN59703.11.0e-0461.22putative photosystem II [Medicago truncatula][more]
TKY66322.11.0e-0462.26Photosystem II D2 protein [Spatholobus suberectus][more]
XP_042528145.11.0e-0461.22photosystem II CP43 reaction center protein [Dipodomys spectabilis][more]
KAF5753227.11.0e-0461.22putative photosystem II [Helianthus annuus][more]
XP_028096441.11.0e-0461.22uncharacterized protein LOC114296337 [Camellia sinensis][more]
BLAST of CmaCh00G000660 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000660.1CmaCh00G000660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009521 photosystem
cellular_component GO:0009536 plastid
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0046872 metal ion binding