CmaCh00G000470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Location	Cma_Chr00: 2844511 .. 2845069 (+)
RNA-Seq Expression	CmaCh00G000470
Synteny	CmaCh00G000470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATTGATACATCACAAGTCCAAAATATCAATTCTTTTTCGAGATTGGAATTTTTAAAAGAAGTCTATGGAATTCTATGGGTGCTTGTCCCTATTTTGACTACTGTATTGGAAATCACAATCGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGGGATACAACAACGTATTGGACCTGAATATGTTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGACACAAAACTACTTTTTAAATAAAATATGCTTCCATCCAGAGGATACGCGTTTATTCAGTATCGGACCATCCATAGCAGTCATATCAATTTTACTAAGCTATTCCGTAATTCCTTTTAGTTATCGCCTTGTTTTAGCATATCTGCAGATCGGTGTTTTTTCATGGATTGTCATTTCAAGTGTTGCTCCCATTGACCTTCTTATGTCAGGACATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCTCAATCAATTAGTTATGAAATACCATTAACTCTATGTGTATTATCAATATCTCTTGTGATTCGTTGA

mRNA sequence

ATGATAATTGATACATCACAAGTCCAAAATATCAATTCTTTTTCGAGATTGGAATTTTTAAAAGAAGTCTATGGAATTCTATGGGTGCTTGTCCCTATTTTGACTACTGTATTGGAAATCACAATCGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGGGATACAACAACGTATTGGACCTGAATATGTTGGTCCTTTGGGAATGACACAAAACTACTTTTTAAATAAAATATGCTTCCATCCAGAGGATACGCGTTTATTCAGTATCGGACCATCCATAGCAGTCATATCAATTTTACTAAGCTATTCCGTAATTCCTTTTAGTTATCGCCTTGTTTTAGCATATCTGCAGATCGGTGTTTTTTCATGGATTGTCATTTCAAGTGTTGCTCCCATTGACCTTCTTATGTCAGGACATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCTCAATCAATTAGTTATGAAATACCATTAACTCTATGTGTATTATCAATATCTCTTGTGATTCGTTGA

Coding sequence (CDS)

ATGATAATTGATACATCACAAGTCCAAAATATCAATTCTTTTTCGAGATTGGAATTTTTAAAAGAAGTCTATGGAATTCTATGGGTGCTTGTCCCTATTTTGACTACTGTATTGGAAATCACAATCGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGGGATACAACAACGTATTGGACCTGAATATGTTGGTCCTTTGGGAATGACACAAAACTACTTTTTAAATAAAATATGCTTCCATCCAGAGGATACGCGTTTATTCAGTATCGGACCATCCATAGCAGTCATATCAATTTTACTAAGCTATTCCGTAATTCCTTTTAGTTATCGCCTTGTTTTAGCATATCTGCAGATCGGTGTTTTTTCATGGATTGTCATTTCAAGTGTTGCTCCCATTGACCTTCTTATGTCAGGACATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCTCAATCAATTAGTTATGAAATACCATTAACTCTATGTGTATTATCAATATCTCTTGTGATTCGTTGA

Protein sequence

MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREISGIQQRIGPEYVGPLGMTQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSYRLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLVIR

Homology

[Close]

BLAST of CmaCh00G000470 vs. ExPASy Swiss-Prot
Match: Q2QD36 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.0e-69
Identity = 151/185 (81.62%), Postives = 158/185 (85.41%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDTSQVQ+I+SFSRLEFLKE YGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTSQVQDIHSFSRLEFLKEFYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 178
           RLVLA L IGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLPIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. ExPASy Swiss-Prot
Match: Q1KXQ8 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus OX=4232 GN=ndhA PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.4e-66
Identity = 143/185 (77.30%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDT++VQ INSFSRLE LKEVYGI+WVL+PI T VL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTTEVQAINSFSRLESLKEVYGIIWVLIPIFTPVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSY VIPF Y
Sbjct: 61  RIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 178
           RLVLA L IGVF WI ISS+AP+ LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. ExPASy Swiss-Prot
Match: A0A390 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=13443 GN=ndhA PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.5e-65
Identity = 140/185 (75.68%), Postives = 153/185 (82.70%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDT+++Q INSF +LE LKEVYGI+W+L+PI T VL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTTELQAINSFFKLESLKEVYGIIWILIPIFTLVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     D RLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGILQALADGTKLLFKENLLPSRGDARLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 178
           RLVLA L IGVF WI ISS+API LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLTIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. ExPASy Swiss-Prot
Match: Q332S2 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa OX=4236 GN=ndhA PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.5e-65
Identity = 141/185 (76.22%), Postives = 153/185 (82.70%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDT++VQ INSFS LE LKEVYGI+W+L+PI T VL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTTEVQAINSFSILESLKEVYGIIWMLIPIFTLVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSY VIPFSY
Sbjct: 61  RIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLVIPFSY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 178
            LVLA L IGVF WI ISS+AP+ LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 HLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. ExPASy Swiss-Prot
Match: Q0ZIW3 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhA PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-64
Identity = 139/185 (75.14%), Postives = 152/185 (82.16%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDT +VQ+INSFSRLE+LKEVYGI+W+LVPI T VL ITIGVL IVWLEREIS GIQQ
Sbjct: 1   MIIDTPEVQDINSFSRLEYLKEVYGIIWMLVPIFTPVLGITIGVLAIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSY +IPF  
Sbjct: 61  RIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLIIPFGS 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 178
            LVL+ L IGVF WI ISS+API LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 NLVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. ExPASy TrEMBL
Match: A0A2H4T236 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=ndhA PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.4e-69
Identity = 154/184 (83.70%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDTSQVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTSQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 177
           RLVLA LQIGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLQIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. ExPASy TrEMBL
Match: A0A2H4T2A2 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=ndhA PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.4e-69
Identity = 154/184 (83.70%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDTSQVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTSQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 177
           RLVLA LQIGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLQIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. ExPASy TrEMBL
Match: A0A344AXT2 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucurbita pepo OX=3663 GN=ndhA PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.4e-69
Identity = 154/184 (83.70%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDTSQVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTSQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 177
           RLVLA LQIGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLQIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. ExPASy TrEMBL
Match: A0A2Z2CG87 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coccinia grandis OX=387127 GN=ndhA PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.1e-68
Identity = 153/185 (82.70%), Postives = 159/185 (85.95%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDTSQVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTSQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 178
           RLVLA L IGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. ExPASy TrEMBL
Match: A0A514YKY7 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Siraitia grosvenorii OX=190515 GN=ndhA PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.1e-68
Identity = 153/184 (83.15%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDT QVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTPQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 177
           RLVLA LQIGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLQIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. NCBI nr
Match: YP_009447506.1 (NADH dehydrogenase subunit 1 [Cucurbita maxima] >YP_009447591.1 NADH dehydrogenase subunit 1 [Cucurbita moschata] >YP_009505135.1 NADH dehydrogenase subunit 1 [Cucurbita pepo] >QWV60896.1 NADH-plastoquinone oxidoreductase subunit 1 [Cucurbita ficifolia] >ATY69930.1 NADH dehydrogenase subunit 1 [Cucurbita maxima] >ATY70012.1 NADH dehydrogenase subunit 1 [Cucurbita moschata] >AWX90407.1 NADH dehydrogenase subunit 1 [Cucurbita pepo])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 154/184 (83.70%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDTSQVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTSQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 177
           RLVLA LQIGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLQIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. NCBI nr
Match: QZL38761.1 (NADH-plastoquinone oxidoreductase subunit 1 [Cucurbita ficifolia])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 154/184 (83.70%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDTSQVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTSQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 177
           RLVLA LQIGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLQIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. NCBI nr
Match: QDL00001.1 (NdhA [Siraitia grosvenorii] >QJA16199.1 NdhA [Siraitia grosvenorii])

HSP 1 Score: 268.5 bits (685), Expect = 4.2e-68
Identity = 153/185 (82.70%), Postives = 159/185 (85.95%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDT QVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTPQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 178
           RLVLA LQIGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLQIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. NCBI nr
Match: YP_009317441.1 (NADH dehydrogenase subunit 1 [Coccinia grandis] >YP_009753306.1 NADH dehydrogenase subunit A [Nothoalsomitra suberosa] >QIT04104.1 NADH dehydrogenase subunit A [Luffa aegyptiaca] >QKX48530.1 NADH-plastoquinone oxidoreductase subunit 1 [Luffa acutangula] >AOX48719.1 NADH dehydrogenase subunit 1 [Coccinia grandis] >AOX48804.1 NADH dehydrogenase subunit 1 [Coccinia grandis] >QIT06378.1 NADH dehydrogenase subunit A [Nothoalsomitra suberosa])

HSP 1 Score: 268.5 bits (685), Expect = 4.2e-68
Identity = 153/185 (82.70%), Postives = 159/185 (85.95%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDTSQVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTSQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 178
           RLVLA L IGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. NCBI nr
Match: YP_009674446.1 (NADH dehydrogenase subunit 1 [Siraitia grosvenorii] >QDK59445.1 NADH dehydrogenase subunit 1 [Siraitia grosvenorii] >QIB71563.1 NADH dehydrogenase subunit 1 [Siraitia grosvenorii])

HSP 1 Score: 268.5 bits (685), Expect = 4.2e-68
Identity = 153/184 (83.15%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MIIDT QVQ+INSFSRLEFLKEVYGILWVLVPILTTVL ITIGVLVIVWLEREIS GIQQ
Sbjct: 1   MIIDTPQVQDINSFSRLEFLKEVYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGM-------TQNYFLNKICFHPEDTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+       T+  F   +     DTRLFSIGPSIAVISILLSYSVIPF Y
Sbjct: 61  RIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGY 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 177
           RLVLA LQIGVF WI ISSVAPI LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 RLVLADLQIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-60
Identity = 134/185 (72.43%), Postives = 146/185 (78.92%), Query Frame = 0


Query: 1   MIIDTSQVQNINSFSRLEFLKEVYGILWVLVPILTTVLEITIGVLVIVWLEREIS-GIQQ 60
           MII  + VQ INSF +LE LKEVYG++W+ VPI + VL I  GVLVIVWLEREIS GIQQ
Sbjct: 1   MIIYATAVQTINSFVKLESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQ 60

Query: 61  RIGPEYVGPLGMTQ-----NYFLNKICFHPE--DTRLFSIGPSIAVISILLSYSVIPFSY 120
           RIGPEY GPLG+ Q        L K    P   +T LFSIGPSIAVISILLSYSVIPFS 
Sbjct: 61  RIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSN 120

Query: 121 RLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 178
            LVLA L IG+F WI ISS+API LLMSG+GSNNKYSFLGGLRAAAQSISYEIPLTLCVL
Sbjct: 121 HLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

[Close]

BLAST of CmaCh00G000470 vs. TAIR 10
Match: ATMG01120.1 (NADH dehydrogenase 1B )

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15
Identity = 52/161 (32.30%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 28  WVLVP--ILTTVLEITIGVLVIVWLEREISG-IQQRIGPEYVGPLGMTQ-----NYFLNK 87
           ++ VP  IL  +L + +GV  +V  ER++   +Q+R GP+ VG  G+ Q     +  + K
Sbjct: 2   YIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILK 61

Query: 88  ICFHPEDTR--LFSIGPSIAVISILLSYSVIPFSYRLVLAYLQIGVFSWIVISSVAPIDL 147
               P      LF + P    +  L++ +V+PF Y +VL+   IG+     ISS+    +
Sbjct: 62  EPISPSSANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI 121

Query: 148 LMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLVI 179
           +++G  SN+KY+FLG LR+AAQ +SYE+ + L ++++ + +
Sbjct: 122 IIAGRSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICV 162

[Close]

BLAST of CmaCh00G000470 vs. TAIR 10
Match: ATMG00516.1 (NADH dehydrogenase 1C )

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15
Identity = 52/161 (32.30%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 28  WVLVP--ILTTVLEITIGVLVIVWLEREISG-IQQRIGPEYVGPLGMTQ-----NYFLNK 87
           ++ VP  IL  +L + +GV  +V  ER++   +Q+R GP+ VG  G+ Q     +  + K
Sbjct: 2   YIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILK 61

Query: 88  ICFHPEDTR--LFSIGPSIAVISILLSYSVIPFSYRLVLAYLQIGVFSWIVISSVAPIDL 147
               P      LF + P    +  L++ +V+PF Y +VL+   IG+     ISS+    +
Sbjct: 62  EPISPSSANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI 121

Query: 148 LMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLVI 179
           +++G  SN+KY+FLG LR+AAQ +SYE+ + L ++++ + +
Sbjct: 122 IIAGRSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICV 162

[Close]

BLAST of CmaCh00G000470 vs. TAIR 10
Match: ATMG01275.1 (NADH dehydrogenase 1A )

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15
Identity = 52/161 (32.30%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 28  WVLVP--ILTTVLEITIGVLVIVWLEREISG-IQQRIGPEYVGPLGMTQ-----NYFLNK 87
           ++ VP  IL  +L + +GV  +V  ER++   +Q+R GP+ VG  G+ Q     +  + K
Sbjct: 2   YIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILK 61

Query: 88  ICFHPEDTR--LFSIGPSIAVISILLSYSVIPFSYRLVLAYLQIGVFSWIVISSVAPIDL 147
               P      LF + P    +  L++ +V+PF Y +VL+   IG+     ISS+    +
Sbjct: 62  EPISPSSANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI 121

Query: 148 LMSGHGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLVI 179
           +++G  SN+KY+FLG LR+AAQ +SYE+ + L ++++ + +
Sbjct: 122 IIAGRSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICV 162

[Close]

BLAST of CmaCh00G000470 vs. TAIR 10
Match: AT2G07785.1 (NADH dehydrogenase family protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.6e-04
Identity = 28/96 (29.17%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 57  IQQRIGPEYVGPLGMTQ-----NYFLNKICFHPEDTR--LFSIGPSIAVISILLSYSVIP 116
           +Q+R GP+ VG  G+ Q     +  + K    P      LF + P    +  L++ +V+P
Sbjct: 4   VQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRMAPVATFMLSLVARAVVP 63

Query: 117 FSYRLVLAYLQIGVFSWIVISSVAPIDLLMSGHGSN 146
           F Y +VL+   IG+     ISS+    ++++G  SN
Sbjct: 64  FDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGRSSN 99

The following BLAST results are available for this feature:

BLAST of CmaCh00G000470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD36	1.0e-69	81.62	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q1KXQ8	1.4e-66	77.30	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus OX=...	[more]
A0A390	3.5e-65	75.68	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=134...	[more]
Q332S2	3.5e-65	76.22	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa OX=423...	[more]
Q0ZIW3	1.3e-64	75.14	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera OX=297...	[more]

BLAST of CmaCh00G000470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H4T236	5.4e-69	83.70	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A2H4T2A2	5.4e-69	83.70	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A344AXT2	5.4e-69	83.70	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucurbita pepo OX=366...	[more]
A0A2Z2CG87	2.1e-68	82.70	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coccinia grandis OX=3...	[more]
A0A514YKY7	2.1e-68	83.15	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Siraitia grosvenorii ...	[more]

BLAST of CmaCh00G000470 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009447506.1	1.1e-68	83.70	NADH dehydrogenase subunit 1 [Cucurbita maxima] >YP_009447591.1 NADH dehydrogena...	[more]
QZL38761.1	1.1e-68	83.70	NADH-plastoquinone oxidoreductase subunit 1 [Cucurbita ficifolia]	[more]
QDL00001.1	4.2e-68	82.70	NdhA [Siraitia grosvenorii] >QJA16199.1 NdhA [Siraitia grosvenorii]	[more]
YP_009317441.1	4.2e-68	82.70	NADH dehydrogenase subunit 1 [Coccinia grandis] >YP_009753306.1 NADH dehydrogena...	[more]
YP_009674446.1	4.2e-68	83.15	NADH dehydrogenase subunit 1 [Siraitia grosvenorii] >QDK59445.1 NADH dehydrogena...	[more]

BLAST of CmaCh00G000470 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01100.1	1.2e-60	72.43	NADH dehydrogenase family protein	[more]
ATMG01120.1	3.4e-15	32.30	NADH dehydrogenase 1B	[more]
ATMG00516.1	3.4e-15	32.30	NADH dehydrogenase 1C	[more]
ATMG01275.1	3.4e-15	32.30	NADH dehydrogenase 1A	[more]
AT2G07785.1	4.6e-04	29.17	NADH dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 34..177 e-value: 2.3E-32 score: 112.5
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 26..176
None	No IPR available	PANTHER	PTHR11432:SF3	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1	coord: 26..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000470.1	CmaCh00G000470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding