CmaCh00G000370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH dehydrogenase subunit 9
Location	Cma_Chr00: 2619897 .. 2620118 (-)
RNA-Seq Expression	CmaCh00G000370
Synteny	CmaCh00G000370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTATGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTTCTAGTCCTTGGGAACAGTGTAGCGACGGATAA

mRNA sequence

ATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTATGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTTCTAGTCCTTGGGAACAGTGTAGCGACGGATAA

Coding sequence (CDS)

ATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTATGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTTCTAGTCCTTGGGAACAGTGTAGCGACGGATAA

Protein sequence

MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFSSPWEQCSDG

Homology

[Close]

BLAST of CmaCh00G000370 vs. ExPASy Swiss-Prot
Match: Q35322 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=NAD9 PE=2 SV=2)

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-34
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INHPDL RI TDYGFEGHPLRKD PLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. ExPASy Swiss-Prot
Match: P80261 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum OX=4113 GN=NAD9 PE=1 SV=3)

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-34
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGV SINHPDL RI TDYGFEGHPLRKD PLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVFSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. ExPASy Swiss-Prot
Match: Q95748 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Arabidopsis thaliana OX=3702 GN=NAD9 PE=1 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 6.4e-34
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INHPDL RI TDYGFEGHPLRKD PLSGYV+VRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVQVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. ExPASy Swiss-Prot
Match: Q33994 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta trigyna OX=19769 GN=NAD9 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-32
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INHPDL RI TDYGFEGHPLRKD PLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQ 70
           FDF+SPWEQ
Sbjct: 178 FDFASPWEQ 186

[Close]

BLAST of CmaCh00G000370 vs. ExPASy Swiss-Prot
Match: Q37787 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta vulgaris OX=161934 GN=NAD9 PE=2 SV=3)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-32
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INHPDL RI TDYGFEGHPLRKD PLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQ 70
           FDF+SPWEQ
Sbjct: 178 FDFASPWEQ 186

[Close]

BLAST of CmaCh00G000370 vs. ExPASy TrEMBL
Match: S4SJL9 (NADH dehydrogenase subunit 9 OS=Gossypium hirsutum OX=3635 GN=nad9 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. ExPASy TrEMBL
Match: E9KZM7 (NADH dehydrogenase subunit 9 OS=Vigna radiata var. radiata OX=3916 GN=nad9 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. ExPASy TrEMBL
Match: A0A290WKX8 (NADH dehydrogenase subunit 9 OS=Solanum lycopersicum OX=4081 GN=nad9 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. ExPASy TrEMBL
Match: A0A7S9H4K9 (NADH dehydrogenase subunit 9 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=nad9 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. ExPASy TrEMBL
Match: A0A6C0M9C6 (NADH dehydrogenase subunit 9 OS=Pediomelum tenuiflorum OX=247917 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. NCBI nr
Match: QWX88084.1 (NADH dehydrogenase subunit 9 [Arachis hypogaea])

HSP 1 Score: 152.5 bits (384), Expect = 1.4e-33
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDFSSPWEQ SDG
Sbjct: 178 FDFSSPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. NCBI nr
Match: QUO98224.1 (NADH dehydrogenase subunit 9 [Dalbergia odorifera])

HSP 1 Score: 152.5 bits (384), Expect = 1.4e-33
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDFSSPWEQ SDG
Sbjct: 178 FDFSSPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. NCBI nr
Match: QKE23408.1 (NADH dehydrogenase subunit 9 [Caryopteris trichosphaera] >QKE23462.1 NADH dehydrogenase subunit 9 [Caryopteris mongholica])

HSP 1 Score: 151.4 bits (381), Expect = 3.1e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000370 vs. NCBI nr
Match: YP_009243650.1 (NADH dehydrogenase subunit 9 [Cannabis sativa] >ALF04061.1 NADH dehydrogenase subunit 9 [Cannabis sativa] >AMR97548.1 NADH dehydrogenase subunit 9 [Cannabis sativa] >ANC49130.1 NADH dehydrogenase subunit 9 [Cannabis sativa] >QJE38170.1 NADH dehydrogenase subunit 9 [Cannabis sativa] >QJI81300.1 NADH dehydrogenase subunit 9 [Cannabis sativa])

HSP 1 Score: 151.4 bits (381), Expect = 3.1e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQHSDG 190

[Close]

BLAST of CmaCh00G000370 vs. NCBI nr
Match: EEF27025.1 (NADH-ubiquinone oxidoreductase mitochondrial precursor, putative [Ricinus communis])

HSP 1 Score: 151.4 bits (381), Expect = 3.1e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINHPDL RISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 97  MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 156

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 157 FDFASPWEQRSDG 169

[Close]

BLAST of CmaCh00G000370 vs. TAIR 10
Match: ATMG00070.1 (NADH dehydrogenase subunit 9 )

HSP 1 Score: 147.9 bits (372), Expect = 3.2e-36
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1   MFGVSSINHPDLCRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INHPDL RISTDYGFEGHPLRKDLPLSGYV+VRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSGYVQVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFSSPWEQCSDG 74
           FDF+SPWEQ SDG
Sbjct: 178 FDFASPWEQRSDG 190

The following BLAST results are available for this feature:

BLAST of CmaCh00G000370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q35322	2.9e-34	91.78	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza sativa subsp. jap...	[more]
P80261	2.9e-34	91.78	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum OX=41...	[more]
Q95748	6.4e-34	90.41	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Arabidopsis thaliana OX...	[more]
Q33994	1.2e-32	92.75	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta trigyna OX=19769 G...	[more]
Q37787	1.2e-32	92.75	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta vulgaris OX=161934...	[more]

BLAST of CmaCh00G000370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
S4SJL9	1.5e-33	95.89	NADH dehydrogenase subunit 9 OS=Gossypium hirsutum OX=3635 GN=nad9 PE=3 SV=1	[more]
E9KZM7	1.5e-33	95.89	NADH dehydrogenase subunit 9 OS=Vigna radiata var. radiata OX=3916 GN=nad9 PE=3 ...	[more]
A0A290WKX8	1.5e-33	95.89	NADH dehydrogenase subunit 9 OS=Solanum lycopersicum OX=4081 GN=nad9 PE=3 SV=1	[more]
A0A7S9H4K9	1.5e-33	95.89	NADH dehydrogenase subunit 9 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 ...	[more]
A0A6C0M9C6	1.5e-33	95.89	NADH dehydrogenase subunit 9 OS=Pediomelum tenuiflorum OX=247917 PE=3 SV=1	[more]

BLAST of CmaCh00G000370 vs. NCBI nr


Match Name	E-value	Identity	Description
QWX88084.1	1.4e-33	97.26	NADH dehydrogenase subunit 9 [Arachis hypogaea]	[more]
QUO98224.1	1.4e-33	97.26	NADH dehydrogenase subunit 9 [Dalbergia odorifera]	[more]
QKE23408.1	3.1e-33	95.89	NADH dehydrogenase subunit 9 [Caryopteris trichosphaera] >QKE23462.1 NADH dehydr...	[more]
YP_009243650.1	3.1e-33	95.89	NADH dehydrogenase subunit 9 [Cannabis sativa] >ALF04061.1 NADH dehydrogenase su...	[more]
EEF27025.1	3.1e-33	95.89	NADH-ubiquinone oxidoreductase mitochondrial precursor, putative [Ricinus commun...	[more]

BLAST of CmaCh00G000370 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00070.1	3.2e-36	93.15	NADH dehydrogenase subunit 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001268	NADH:ubiquinone oxidoreductase, 30kDa subunit	PFAM	PF00329	Complex1_30kDa	coord: 1..35 e-value: 7.3E-10 score: 39.5
None	No IPR available	PANTHER	PTHR10884	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3	coord: 1..71
IPR037232	NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily	SUPERFAMILY	143243	Nqo5-like	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000370.1	CmaCh00G000370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity