CmaCh00G000220 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G000220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein TIC 214
LocationCma_Chr00: 2479021 .. 2479504 (-)
RNA-Seq ExpressionCmaCh00G000220
SyntenyCmaCh00G000220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCCTCATAATCTCATCATTCATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAAGATTTCTATGTTTCGATGCAACAACAAGATGTTCTTTGTAAGAAGTCGTTTTGTTGGTTGGTTAATTGGTTACATTTTCTTCATTCAATGGGTTGGATTGATATTAGTCTGGCTACAGCAAAAGAATTCTATGTAGATCTAATAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTACTTGTGTCTACTATTTAGGCGGAATACCTTCACCCATTCTGACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCATTGTTTCGGAAGAAAAGAAGGATCCGGACAAAATCAATGA

mRNA sequence

ATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCCTCATAATCTCATCATTCATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAAGATTTCTATGTTTCGATGCAACAACAAGATGTTCTTTGTAAGAAGTCGTTTTGTTGGTTGGTTAATTGGTTACATTTTCTTCATTCAATGGGTTGGATTGATATTAGTCTGGCTACAGCAAAAGAATTCTATGTAGATCTAATAAGCGGAATACCTTCACCCATTCTGACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCATTGTTTCGGAAGAAAAGAAGGATCCGGACAAAATCAATGA

Coding sequence (CDS)

ATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCCTCATAATCTCATCATTCATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAAGATTTCTATGTTTCGATGCAACAACAAGATGTTCTTTGTAAGAAGTCGTTTTGTTGGTTGGTTAATTGGTTACATTTTCTTCATTCAATGGGTTGGATTGATATTAGTCTGGCTACAGCAAAAGAATTCTATGTAGATCTAATAAGCGGAATACCTTCACCCATTCTGACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCATTGTTTCGGAAGAAAAGAAGGATCCGGACAAAATCAATGA

Protein sequence

MDLLPETQCVILAFNVYSLIISSFIIQPFHFTKFNVSQISQDFYVSMQQQDVLCKKSFCWLVNWLHFLHSMGWIDISLATAKEFYVDLISGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSHCFGRKEGSGQNQ
Homology
BLAST of CmaCh00G000220 vs. ExPASy Swiss-Prot
Match: Q09WW0 (Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 32/56 (57.14%), Postives = 32/56 (57.14%), Query Frame = 0

Query: 92  IPSPILTKKLKETE------------------GTKQEQEGSTEEDTSPSHCFGRKE 130
           IPSPILTKKLKETE                  GTKQEQEGSTEED SPS     KE
Sbjct: 234 IPSPILTKKLKETEERGESEEERDVEKTSETKGTKQEQEGSTEEDPSPSLFSEEKE 289

BLAST of CmaCh00G000220 vs. ExPASy TrEMBL
Match: A0A410PAD6 (Protein TIC 214 OS=Commiphora gileadensis OX=1700993 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 25  IIQPFHFTKFNVSQISQDFYVSMQQQDVLCKKSFCWLVNWLHFLHSMGWIDISLATAKEF 84
           IIQPFHFTKFNVSQISQ  YVSMQQQDV+C KSFCWLVNW HF+H MGWI ISL TAKEF
Sbjct: 134 IIQPFHFTKFNVSQISQHLYVSMQQQDVICNKSFCWLVNWSHFIHEMGWIGISLDTAKEF 193

Query: 85  Y 86
           Y
Sbjct: 194 Y 194

BLAST of CmaCh00G000220 vs. ExPASy TrEMBL
Match: A0A650F2E1 (Hypothetical chloroplast RF19 OS=Senegalia senegal OX=138043 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 25  IIQPFHFTKFNVSQISQDFYVSMQQQDVLCKKSFCWLVNWLHFLHSMGWIDISLATAKEF 84
           +I+PFHFTKFNVSQISQ  YVSMQQ   +  K FCWLVNW HF+H MGWI ISL T K F
Sbjct: 137 VIEPFHFTKFNVSQISQHLYVSMQQPIFISNKYFCWLVNWSHFIHEMGWIGISLDTEKYF 196

Query: 85  Y 86
           Y
Sbjct: 197 Y 197

BLAST of CmaCh00G000220 vs. ExPASy TrEMBL
Match: A0A6G9DXW9 (Ycf1 OS=Sinomenium acutum OX=152363 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.5e-15
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 25  IIQPFHFTKFNVSQISQDFYVSMQQQDVLCKKSFCWLVNWLHFLHSMGWIDISLATAKEF 84
           IIQPFHFTKFNVSQIS+  YVSMQQQ+V+C K FCWLVNW +F + M W+ + L   K  
Sbjct: 139 IIQPFHFTKFNVSQISKHLYVSMQQQNVICNKYFCWLVNWSYFFNEMDWVGVLLDKTKSV 198

Query: 85  Y 86
           Y
Sbjct: 199 Y 199

BLAST of CmaCh00G000220 vs. ExPASy TrEMBL
Match: A0A6J1EVN9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111436405 OS=Cucurbita moschata OX=3662 GN=LOC111436405 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 47/76 (61.84%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 58  FCWLVNWLHFLHSMGWID--ISLATAKEFYVDLISGIPSPILTKKLKETEGTKQEQEGST 117
           FCWLVN  HFL SM        ++  +     + SGIPSPILTKKLKET+GTKQEQEGST
Sbjct: 115 FCWLVNXSHFLRSMVCRSNKYLVSELRNSMARIFSGIPSPILTKKLKETKGTKQEQEGST 174

Query: 118 EEDTSPSHCFGRKEGS 132
           EEDTSPS CF   E S
Sbjct: 175 EEDTSPSLCFEENEDS 190

BLAST of CmaCh00G000220 vs. ExPASy TrEMBL
Match: A0A4P8JN90 (Protein TIC 214 OS=Plantago ovata OX=185002 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.8e-12
Identity = 48/90 (53.33%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 25  IIQPFHFTKFNVSQISQDFYVSMQQQDVLCKKSFCWLVNWL----HFLHSMGWIDISLAT 84
           I QPF F+KFNVSQISQ  YVSMQQQDV+C K FCWLVNWL     F   M  I ISL T
Sbjct: 182 ITQPFFFSKFNVSQISQHLYVSMQQQDVICNKKFCWLVNWLGNCSKFFQEMAGIGISLDT 241

Query: 85  AKEFYVDLISGIPSPILTKKLKETEGTKQE 111
           A+   V  I      +L KK++   G+  E
Sbjct: 242 AEIQKVHSI----EEVLCKKMEIFYGSDLE 267

BLAST of CmaCh00G000220 vs. NCBI nr
Match: YP_009561670.1 (hypothetical chloroplast RF19 [Commiphora gileadensis] >QAT19758.1 hypothetical chloroplast RF19 [Commiphora gileadensis])

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 25  IIQPFHFTKFNVSQISQDFYVSMQQQDVLCKKSFCWLVNWLHFLHSMGWIDISLATAKEF 84
           IIQPFHFTKFNVSQISQ  YVSMQQQDV+C KSFCWLVNW HF+H MGWI ISL TAKEF
Sbjct: 134 IIQPFHFTKFNVSQISQHLYVSMQQQDVICNKSFCWLVNWSHFIHEMGWIGISLDTAKEF 193

Query: 85  Y 86
           Y
Sbjct: 194 Y 194

BLAST of CmaCh00G000220 vs. NCBI nr
Match: YP_009724465.1 (hypothetical chloroplast RF19 [Senegalia senegal] >QGT77101.1 hypothetical chloroplast RF19 [Senegalia senegal])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 25  IIQPFHFTKFNVSQISQDFYVSMQQQDVLCKKSFCWLVNWLHFLHSMGWIDISLATAKEF 84
           +I+PFHFTKFNVSQISQ  YVSMQQ   +  K FCWLVNW HF+H MGWI ISL T K F
Sbjct: 137 VIEPFHFTKFNVSQISQHLYVSMQQPIFISNKYFCWLVNWSHFIHEMGWIGISLDTEKYF 196

Query: 85  Y 86
           Y
Sbjct: 197 Y 197

BLAST of CmaCh00G000220 vs. NCBI nr
Match: YP_009755462.1 (Ycf1 [Sinomenium acutum] >QIP53864.1 Ycf1 [Sinomenium acutum])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 25  IIQPFHFTKFNVSQISQDFYVSMQQQDVLCKKSFCWLVNWLHFLHSMGWIDISLATAKEF 84
           IIQPFHFTKFNVSQIS+  YVSMQQQ+V+C K FCWLVNW +F + M W+ + L   K  
Sbjct: 139 IIQPFHFTKFNVSQISKHLYVSMQQQNVICNKYFCWLVNWSYFFNEMDWVGVLLDKTKSV 198

Query: 85  Y 86
           Y
Sbjct: 199 Y 199

BLAST of CmaCh00G000220 vs. NCBI nr
Match: XP_022929945.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111436405 [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 47/76 (61.84%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 58  FCWLVNWLHFLHSMGWID--ISLATAKEFYVDLISGIPSPILTKKLKETEGTKQEQEGST 117
           FCWLVN  HFL SM        ++  +     + SGIPSPILTKKLKET+GTKQEQEGST
Sbjct: 115 FCWLVNXSHFLRSMVCRSNKYLVSELRNSMARIFSGIPSPILTKKLKETKGTKQEQEGST 174

Query: 118 EEDTSPSHCFGRKEGS 132
           EEDTSPS CF   E S
Sbjct: 175 EEDTSPSLCFEENEDS 190

BLAST of CmaCh00G000220 vs. NCBI nr
Match: QCP70999.1 (hypothetical chloroplast RF19 [Plantago ovata])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 48/90 (53.33%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 25  IIQPFHFTKFNVSQISQDFYVSMQQQDVLCKKSFCWLVNWL----HFLHSMGWIDISLAT 84
           I QPF F+KFNVSQISQ  YVSMQQQDV+C K FCWLVNWL     F   M  I ISL T
Sbjct: 182 ITQPFFFSKFNVSQISQHLYVSMQQQDVICNKKFCWLVNWLGNCSKFFQEMAGIGISLDT 241

Query: 85  AKEFYVDLISGIPSPILTKKLKETEGTKQE 111
           A+   V  I      +L KK++   G+  E
Sbjct: 242 AEIQKVHSI----EEVLCKKMEIFYGSDLE 267

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q09WW01.5e-0457.14Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A410PAD61.3e-2285.25Protein TIC 214 OS=Commiphora gileadensis OX=1700993 GN=ycf1 PE=3 SV=1[more]
A0A650F2E11.4e-1670.49Hypothetical chloroplast RF19 OS=Senegalia senegal OX=138043 GN=ycf1 PE=4 SV=1[more]
A0A6G9DXW97.5e-1563.93Ycf1 OS=Sinomenium acutum OX=152363 GN=ycf1 PE=4 SV=1[more]
A0A6J1EVN95.4e-1361.84LOW QUALITY PROTEIN: uncharacterized protein LOC111436405 OS=Cucurbita moschata ... [more]
A0A4P8JN907.8e-1253.33Protein TIC 214 OS=Plantago ovata OX=185002 GN=ycf1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
YP_009561670.12.7e-2285.25hypothetical chloroplast RF19 [Commiphora gileadensis] >QAT19758.1 hypothetical ... [more]
YP_009724465.12.8e-1670.49hypothetical chloroplast RF19 [Senegalia senegal] >QGT77101.1 hypothetical chlor... [more]
YP_009755462.11.6e-1463.93Ycf1 [Sinomenium acutum] >QIP53864.1 Ycf1 [Sinomenium acutum][more]
XP_022929945.11.1e-1261.84LOW QUALITY PROTEIN: uncharacterized protein LOC111436405 [Cucurbita moschata][more]
QCP70999.11.6e-1153.33hypothetical chloroplast RF19 [Plantago ovata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000220.1CmaCh00G000220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009536 plastid