CmaCh00G000040 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ribosomal protein L5
Location	Cma_Chr00: 77350 .. 77895 (-)
RNA-Seq Expression	CmaCh00G000040
Synteny	CmaCh00G000040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCACTCGATTTTCATTACGAAGATGTATCACGTCAGGATCCGTTGCTCAAACTGAATCACGCCAACGTTATAGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTGGCTATGGAGATTCCGCGCGGTCAGAAATTGATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCCCGACAAAGCACTCTCCGAGGGCATGGAATGTCGAATTTTGCGGTCAGAATCTGCACAGTAATGTCTCTCTTAGATTCTCCGGTCGAAATACGGGAAAACTCCATGCAATTCTCGATGGAAACAGAGTTTTGCGAATTCTCCCCGGAACTAGAAGATCATTTCAAGATCTTCGAACATATTCTAGGGTTCAATGTGACTAGTGTCACTTTGGCCAACACACAAGATGAGACTTTACCACCGTGGAGTGGCTTTTTGCAAAAAGATGAGTGA

mRNA sequence

ATGTTTTCACTCGATTTTCATTACGAAGATGTATCACGTCAGGATCCGTTGCTCAAACTGAATCACGCCAACGTTATAGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTGGCTATGGAGATTCCGCGCGGTCAGAAATTGATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCCCGACAAAGCACTCTCCGAGGGCATGGAATGTCGAATTTTGCGGTCAGAATCTGCACAGTAATGTCTCTCTTAGATTCTCCGGTCGAAATACGGGAAAACTCCATGCAATTCTCGATGGAAACAGAGTTTTGCGAATTCTCCCCGGAACTAGAAGATCATTTCAAGATCTTCGAACATATTCTAGGGTTCAATGTGACTAGTGTCACTTTGGCCAACACACAAGATGAGACTTTACCACCGTGGAGTGGCTTTTTGCAAAAAGATGAGTGA

Coding sequence (CDS)

ATGTTTTCACTCGATTTTCATTACGAAGATGTATCACGTCAGGATCCGTTGCTCAAACTGAATCACGCCAACGTTATAGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTGGCTATGGAGATTCCGCGCGGTCAGAAATTGATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCCCGACAAAGCACTCTCCGAGGGCATGGAATGTCGAATTTTGCGGTCAGAATCTGCACAGTAATGTCTCTCTTAGATTCTCCGGTCGAAATACGGGAAAACTCCATGCAATTCTCGATGGAAACAGAGTTTTGCGAATTCTCCCCGGAACTAGAAGATCATTTCAAGATCTTCGAACATATTCTAGGGTTCAATGTGACTAGTGTCACTTTGGCCAACACACAAGATGAGACTTTACCACCGTGGAGTGGCTTTTTGCAAAAAGATGAGTGA

Protein sequence

MFSLDFHYEDVSRQDPLLKLNHANVIEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDHFKIFEHILGFNVTSVTLANTQDETLPPWSGFLQKDE

Homology

[Close]

BLAST of CmaCh00G000040 vs. ExPASy Swiss-Prot
Match: P42793 (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=1 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 8.1e-86
Identity = 158/181 (87.29%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 1   MFSLDFHYEDVSRQDPLLKLNHANVIEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60
           MF L+FHYEDV RQD LLKLN+ANV+EVPG CEIRVVPKAPY+FIIKNGKLAMEIP GQK
Sbjct: 1   MFPLNFHYEDVLRQDLLLKLNYANVMEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQK 60

Query: 61  LIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPV 120
            IQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGMSNF VRI TVMSLLD PV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFLVRILTVMSLLDFPV 120

Query: 121 EIRENSMQFSMETEFCEFSPELEDHFKIFEHILGFNVTSVTLANTQDETLPPWSGFLQKD 180
           EIR+NS+QFSMETEFCEFSPELEDHF+IFEHI GFNVT +T ANTQDETL  WSGFLQKD
Sbjct: 121 EIRKNSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLLLWSGFLQKD 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of CmaCh00G000040 vs. ExPASy Swiss-Prot
Match: Q05492 (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 9.2e-82
Identity = 156/183 (85.25%), Postives = 163/183 (89.07%), Query Frame = 0


Query: 1   MFSLDFHYEDVSRQDPLLKLNHANVIEVPGSCEIRVVPK--APYDFIIKNGKLAMEIPRG 60
           MF L+FHYEDV RQD LLKLN ANV+EVPG CEIR+VPK  + YDFIIKNGKLAMEI RG
Sbjct: 1   MFPLNFHYEDVLRQDLLLKLNLANVMEVPGLCEIRIVPKTSSTYDFIIKNGKLAMEILRG 60

Query: 61  QKLIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDS 120
           QK IQT+RGSTGKSFRSNPFLESNKDKGYVSDLARQS LRGHGMSNF VRI TVMSLLDS
Sbjct: 61  QKFIQTERGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGMSNFLVRILTVMSLLDS 120

Query: 121 PVEIRENSMQFSMETEFCEFSPELEDHFKIFEHILGFNVTSVTLANTQDETLPPWSGFLQ 180
            VEIRENS+QFSMETEFCEFSPELEDHF+IFEHI  FNVT VT ANTQDETL  WSGFLQ
Sbjct: 121 RVEIRENSIQFSMETEFCEFSPELEDHFEIFEHIRRFNVTIVTSANTQDETLLLWSGFLQ 180

Query: 181 KDE 182
           KDE
Sbjct: 181 KDE 183

[Close]

BLAST of CmaCh00G000040 vs. ExPASy Swiss-Prot
Match: P49388 (60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 303.9 bits (777), Expect = 1.2e-81
Identity = 150/181 (82.87%), Postives = 161/181 (88.95%), Query Frame = 0


Query: 1   MFSLDFHYEDVSRQDPLLKLNHANVIEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60
           MF L+FHYEDVSRQDPLL      + +  GSCEIRVVP  PY+FIIKNGKLAMEIPRGQK
Sbjct: 1   MFPLNFHYEDVSRQDPLLNRITPTLWKFLGSCEIRVVPNGPYNFIIKNGKLAMEIPRGQK 60

Query: 61  LIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPV 120
            IQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGMSNF+VRI TVMSLLD PV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPV 120

Query: 121 EIRENSMQFSMETEFCEFSPELEDHFKIFEHILGFNVTSVTLANTQDETLPPWSGFLQKD 180
           EIR+NS+QFSMETEFCEF+P+L+DHF+IFEHI GFNVT VT ANTQDETLP WSGFLQKD
Sbjct: 121 EIRKNSIQFSMETEFCEFAPQLQDHFEIFEHIRGFNVTIVTSANTQDETLPLWSGFLQKD 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of CmaCh00G000040 vs. ExPASy Swiss-Prot
Match: P51409 (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 3.0e-72
Identity = 149/183 (81.42%), Postives = 156/183 (85.25%), Query Frame = 0


Query: 1   MFSLDFHYEDVSRQDPLLKLNHANVIEVPGSCEIRVVPK-APYDFIIKNGKLAMEIPRGQ 60
           MF L FHYEDV RQD LLKLN+ANV+EVPG C+I VVPK AP    IKNGKLAMEI  GQ
Sbjct: 5   MFPLYFHYEDVLRQDLLLKLNYANVMEVPGLCKIIVVPKTAP---SIKNGKLAMEISCGQ 64

Query: 61  KLIQTQRGSTGKSFRSNPFLESNKD-KGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDS 120
           KL   QR STGKSFRSNPFL SNKD KGYVSDLARQSTLRGHGMS+F VRI TVMSLLDS
Sbjct: 65  KL--KQRASTGKSFRSNPFLGSNKDKKGYVSDLARQSTLRGHGMSHFLVRISTVMSLLDS 124

Query: 121 PVEIRENSMQFSMETEFCEFSPELEDHFKIFEHILGFNVTSVTLANTQDETLPPWSGFLQ 180
           P+EIRE S+QFSMETEFCEFSPELEDHF+IFEHI GFNVT VT ANTQDETL  WSGFLQ
Sbjct: 125 PLEIRERSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLLLWSGFLQ 182

Query: 181 KDE 182
           KDE
Sbjct: 185 KDE 182

[Close]

BLAST of CmaCh00G000040 vs. ExPASy Swiss-Prot
Match: P26860 (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 201.8 bits (512), Expect = 6.5e-51
Identity = 110/181 (60.77%), Postives = 135/181 (74.59%), Query Frame = 0


Query: 4   LDFHYEDVSRQDPLLKLNHANVIEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQ 63
           L+FHY  V R D LLK+N+ N++EVP  C+I VVPKAP +F IKN KLAMEI  GQK IQ
Sbjct: 9   LEFHYNQVIRPDLLLKINYENIMEVPRLCKIIVVPKAPSNF-IKNVKLAMEIVCGQKFIQ 68

Query: 64  TQ-RGSTGKSFRSNPFL---ESNKDKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSP 123
           T+ RGSTGKSFR N F+   ES +D GYV+ LAR STLRGH M NF  ++ T++S  D P
Sbjct: 69  TRSRGSTGKSFRFNKFVLNQESKRDTGYVTYLAR-STLRGHIMYNFLEKLVTIISFYDYP 128

Query: 124 VEIRENSMQFSMETEFCEFSPELEDHFKIFEHILGFNVTSVTLANTQDETLPPWSGFLQK 181
           V+I++NS+Q SM T      PE++DHF+IFEHI GF+VT VT ANTQDET+  WSGFLQK
Sbjct: 129 VKIQKNSIQLSMATSLLRLFPEIQDHFEIFEHIRGFDVTIVTSANTQDETVILWSGFLQK 187

[Close]

BLAST of CmaCh00G000040 vs. TAIR 10
Match: AT2G07725.1 (Ribosomal L5P family protein )

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-91
Identity = 163/181 (90.06%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 1   MFSLDFHYEDVSRQDPLLKLNHANVIEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60
           MF L+FHYEDVSRQDPLLK NHANV+EVPGSCEIRVVPKAPY+FIIKNGKLAMEIPRGQK
Sbjct: 1   MFPLNFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQK 60

Query: 61  LIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPV 120
            IQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGMSNF+VRI TVMSLLD PV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPV 120

Query: 121 EIRENSMQFSMETEFCEFSPELEDHFKIFEHILGFNVTSVTLANTQDETLPPWSGFLQKD 180
           EIR+NS+QFSMETEFCEFSPELEDHF+IFEHI GFNVT +T ANTQDETLP WSGFLQKD
Sbjct: 121 EIRKNSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLPLWSGFLQKD 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of CmaCh00G000040 vs. TAIR 10
Match: ATMG00210.1 (ribosomal protein L5 )

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-91
Identity = 163/181 (90.06%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 1   MFSLDFHYEDVSRQDPLLKLNHANVIEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60
           MF L+FHYEDVSRQDPLLK NHANV+EVPGSCEIRVVPKAPY+FIIKNGKLAMEIPRGQK
Sbjct: 1   MFPLNFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQK 60

Query: 61  LIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPV 120
            IQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGMSNF+VRI TVMSLLD PV
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPV 120

Query: 121 EIRENSMQFSMETEFCEFSPELEDHFKIFEHILGFNVTSVTLANTQDETLPPWSGFLQKD 180
           EIR+NS+QFSMETEFCEFSPELEDHF+IFEHI GFNVT +T ANTQDETLP WSGFLQKD
Sbjct: 121 EIRKNSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLPLWSGFLQKD 180

Query: 181 E 182
           E
Sbjct: 181 E 181

The following BLAST results are available for this feature:

BLAST of CmaCh00G000040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42793	8.1e-86	87.29	60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 ...	[more]
Q05492	9.2e-82	85.25	60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 ...	[more]
P49388	1.2e-81	82.87	60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 S...	[more]
P51409	3.0e-72	81.42	60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=...	[more]
P26860	6.5e-51	60.77	60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5...	[more]

BLAST of CmaCh00G000040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07725.1	1.0e-91	90.06	Ribosomal L5P family protein	[more]
ATMG00210.1	1.0e-91	90.06	ribosomal protein L5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022803	Ribosomal protein L5 domain superfamily	GENE3D	3.30.1440.10		coord: 3..178 e-value: 6.3E-20 score: 73.4
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 1..178
IPR002132	Ribosomal protein L5	PIRSF	PIRSF002161	RPL5p_RPL5a_RPL11e_RPL5o	coord: 1..181 e-value: 1.3E-26 score: 91.1
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 1..179
None	No IPR available	PANTHER	PTHR11994:SF11	60S RIBOSOMAL PROTEIN L5, MITOCHONDRIAL	coord: 1..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000040.1	CmaCh00G000040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respirasome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome