CmUC11G221250 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G221250
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Glutamate receptor
Location	CmU531Chr11: 29520141 .. 29521103 (+)
RNA-Seq Expression	CmUC11G221250
Synteny	CmUC11G221250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGGGTTTCTTATTACACTCTATATATTGGGAGGGAGAGAGCAAAGCCTTTGGCTTTTGACTATCATTCTCATAAGAAATGAGAAAGTTTCCCTTTCTGTTTCCTTTCTTGTTGTTTGCTCTGATAGTTTCTGGAAAGCATGAAACCGAAAGAAATGTGAGTGCAACAATGGTTGATGATGGAAAGGGCAGAATAGGGGCCATTGTAGATCTGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGGTGAGCCTTCTCATTTTGTTTTAATTTCATTGAATGCACTTCTGTTCATATCAATTGAACTGTCTTGAAGTAGAAAGCAGTCCTGGTTTTTTCGTTACCTCCTACTATCTATCATTAAACAGAATTTATCACCAAAACACAATCTAAATGAACTATTGAATTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGTTGGAAATGAGAATCAGATTCCTGTACTAGCATTAGCTAATGAAATACCAAAGTGGGCAACTGAGAGGTTCAAATTTTTGGTTCAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGGCTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAGTTTGATTCTGATTTATTTTCTAAAGAACTGGAAAAGCTAAGAAGAGGGTCATGCAGAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGA

mRNA sequence

ATGTTTCTGGAAAGCATGAAACCGAAAGAAATGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGGCTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGA

Coding sequence (CDS)

ATGTTTCTGGAAAGCATGAAACCGAAAGAAATGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGGCTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGA

Protein sequence

MFLESMKPKEMIGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPNLAAKELISVQQVHALIGPQTWEMASVVAEASPSQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAENFCSAYVFQVGTASI

Homology

[Close]

BLAST of CmUC11G221250 vs. NCBI nr
Match: XP_038898557.1 (glutamate receptor 2.8-like [Benincasa hispida])

HSP 1 Score: 197.2 bits (500), Expect = 9.6e-47
Identity = 108/149 (72.48%), Postives = 114/149 (76.51%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIE+FNSL+NQNFSLII+DSRSDPN   LAAK+LISVQQVHALIG QTW
Sbjct: 49  IGKEEILAMHMAIEEFNSLSNQNFSLIIRDSRSDPNLAALAAKDLISVQQVHALIGRQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+AI GIISSWDWHL
Sbjct: 109 EMASVVAEVGNENQIPVLALANEIPKWATEKFKFLVQASPSQLNQMRAIVGIISSWDWHL 168

[Close]

BLAST of CmUC11G221250 vs. NCBI nr
Match: XP_022976413.1 (glutamate receptor 2.8-like [Cucurbita maxima])

HSP 1 Score: 185.3 bits (469), Expect = 3.8e-43
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAM MAIEDFNSL+N+NFSL+I+DSRSDPN   LAAK+LIS+Q+V  LIGPQTW
Sbjct: 49  IGKEEILAMQMAIEDFNSLSNRNFSLVIRDSRSDPNLAALAAKDLISMQRVQVLIGPQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           E+ASVV+E                             ASPSQLNQM+AIAGII SWDWHL
Sbjct: 109 EVASVVSEVGNEEKIPVLALANEIPKWANERFKFLVQASPSQLNQMRAIAGIIGSWDWHL 168

[Close]

BLAST of CmUC11G221250 vs. NCBI nr
Match: ADN33805.1 (glutamate-gated kainate-type ion channel receptor subunit glur5 [Cucumis melo subsp. melo] >KAA0066786.1 glutamate-gated kainate-type ion channel receptor subunit glur5 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 4.9e-43
Identity = 102/149 (68.46%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+AIAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]

BLAST of CmUC11G221250 vs. NCBI nr
Match: XP_008463716.1 (PREDICTED: glutamate receptor 2.8-like isoform X2 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 4.9e-43
Identity = 102/149 (68.46%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 49  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+AIAGI+SS DWHL
Sbjct: 109 EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 168

[Close]

BLAST of CmUC11G221250 vs. NCBI nr
Match: TYK27933.1 (glutamate receptor 2.8-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 4.9e-43
Identity = 102/149 (68.46%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+AIAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]

BLAST of CmUC11G221250 vs. ExPASy Swiss-Prot
Match: Q8LGN0 (Glutamate receptor 2.7 OS=Arabidopsis thaliana OX=3702 GN=GLR2.7 PE=2 SV=3)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 0


Query: 17  ILAMHMAIEDFNSLNNQ---NFSLIIKDSRSD---PNLAAKELISVQQVHALIGPQTWEM 76
           + ++++++ DF   ++      ++ I+DS  D    + AA +LI  +QV A+IGP+T   
Sbjct: 56  LTSINISLSDFYKYHSDYTTRLAIHIRDSMEDVVQASSAALDLIKNEQVSAIIGPRTSMQ 115

Query: 77  AS-VVAEASPSQL----------------------------NQMKAIAGIISSWDWHLVN 128
           A  ++  A  SQ+                            +Q+KAIA I+ S+ W  V 
Sbjct: 116 AEFMIRLADKSQVPTITFSATCPLLTSINSPYFVRATLDDSSQVKAIAAIVKSFGWRNVV 175

[Close]

BLAST of CmUC11G221250 vs. ExPASy TrEMBL
Match: A0A6J1IM27 (Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111476827 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.8e-43
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAM MAIEDFNSL+N+NFSL+I+DSRSDPN   LAAK+LIS+Q+V  LIGPQTW
Sbjct: 49  IGKEEILAMQMAIEDFNSLSNRNFSLVIRDSRSDPNLAALAAKDLISMQRVQVLIGPQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           E+ASVV+E                             ASPSQLNQM+AIAGII SWDWHL
Sbjct: 109 EVASVVSEVGNEEKIPVLALANEIPKWANERFKFLVQASPSQLNQMRAIAGIIGSWDWHL 168

[Close]

BLAST of CmUC11G221250 vs. ExPASy TrEMBL
Match: A0A5A7VK72 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001280 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.4e-43
Identity = 102/149 (68.46%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+AIAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]

BLAST of CmUC11G221250 vs. ExPASy TrEMBL
Match: A0A5D3DW80 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001210 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.4e-43
Identity = 102/149 (68.46%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+AIAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]

BLAST of CmUC11G221250 vs. ExPASy TrEMBL
Match: E5GBG3 (Glutamate receptor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.4e-43
Identity = 102/149 (68.46%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+AIAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]

BLAST of CmUC11G221250 vs. ExPASy TrEMBL
Match: A0A1S3CLG9 (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103501797 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.4e-43
Identity = 102/149 (68.46%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 49  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKAIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+AIAGI+SS DWHL
Sbjct: 109 EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 168

[Close]

BLAST of CmUC11G221250 vs. TAIR 10
Match: AT2G29120.1 (glutamate receptor 2.7 )

HSP 1 Score: 47.8 bits (112), Expect = 8.7e-06
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 0


Query: 17  ILAMHMAIEDFNSLNNQ---NFSLIIKDSRSD---PNLAAKELISVQQVHALIGPQTWEM 76
           + ++++++ DF   ++      ++ I+DS  D    + AA +LI  +QV A+IGP+T   
Sbjct: 56  LTSINISLSDFYKYHSDYTTRLAIHIRDSMEDVVQASSAALDLIKNEQVSAIIGPRTSMQ 115

Query: 77  AS-VVAEASPSQL----------------------------NQMKAIAGIISSWDWHLVN 128
           A  ++  A  SQ+                            +Q+KAIA I+ S+ W  V 
Sbjct: 116 AEFMIRLADKSQVPTITFSATCPLLTSINSPYFVRATLDDSSQVKAIAAIVKSFGWRNVV 175

[Close]

BLAST of CmUC11G221250 vs. TAIR 10
Match: AT3G51480.1 (glutamate receptor 3.6 )

HSP 1 Score: 42.0 bits (97), Expect = 4.8e-04
Identity = 38/139 (27.34%), Postives = 57/139 (41.01%), Query Frame = 0


Query: 11  MIGKEEILAMHMAIEDFNS----LNNQNFSLIIKDSRSDPNLAAKELISVQQVH--ALIG 70
           +IGK   +AM  A+ED N+    LN     +I+ D++ +  ++  E +   +    A+IG
Sbjct: 41  LIGKVIKVAMDAAVEDVNASPSILNTTTLRIIMHDTKYNGFMSIMEPLQFMESETVAIIG 100

Query: 71  PQTWEMASVVA-----------------------------EASPSQLNQMKAIAGIISSW 115
           PQ    A VVA                               S + L QM AIA I+  +
Sbjct: 101 PQRSTTARVVAHVATELKIPILSFSATDPTMSPLQFPFFIRTSQNDLFQMAAIADIVQFY 160

The following BLAST results are available for this feature:

BLAST of CmUC11G221250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898557.1	9.6e-47	72.48	glutamate receptor 2.8-like [Benincasa hispida]	[more]
XP_022976413.1	3.8e-43	67.79	glutamate receptor 2.8-like [Cucurbita maxima]	[more]
ADN33805.1	4.9e-43	68.46	glutamate-gated kainate-type ion channel receptor subunit glur5 [Cucumis melo su...	[more]
XP_008463716.1	4.9e-43	68.46	PREDICTED: glutamate receptor 2.8-like isoform X2 [Cucumis melo]	[more]
TYK27933.1	4.9e-43	68.46	glutamate receptor 2.8-like isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of CmUC11G221250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGN0	1.2e-04	29.45	Glutamate receptor 2.7 OS=Arabidopsis thaliana OX=3702 GN=GLR2.7 PE=2 SV=3	[more]

BLAST of CmUC11G221250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IM27	1.8e-43	67.79	Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111476827 PE=3 SV=1	[more]
A0A5A7VK72	2.4e-43	68.46	Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G0...	[more]
A0A5D3DW80	2.4e-43	68.46	Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G0...	[more]
E5GBG3	2.4e-43	68.46	Glutamate receptor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3CLG9	2.4e-43	68.46	Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103501797 PE=3 SV=1	[more]

BLAST of CmUC11G221250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29120.1	8.7e-06	29.45	glutamate receptor 2.7	[more]
AT3G51480.1	4.8e-04	27.34	glutamate receptor 3.6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.2300		coord: 83..141 e-value: 7.5E-6 score: 27.8
None	No IPR available	GENE3D	3.40.50.2300		coord: 5..82 e-value: 2.2E-8 score: 35.9
None	No IPR available	PANTHER	PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	coord: 11..77
None	No IPR available	PANTHER	PTHR18966:SF463	GLUTAMATE RECEPTOR	coord: 76..128
None	No IPR available	PANTHER	PTHR18966:SF463	GLUTAMATE RECEPTOR	coord: 11..77
None	No IPR available	PANTHER	PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	coord: 76..128
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 8..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G221250.1	CmUC11G221250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0015276	ligand-gated ion channel activity
molecular_function	GO:0038023	signaling receptor activity