CmUC11G217130 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G217130
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionU5 small nuclear ribonucleoprotein 40 kDa protein
LocationCmU531Chr11: 25515446 .. 25518633 (+)
RNA-Seq ExpressionCmUC11G217130
SyntenyCmUC11G217130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTCCCTTCAGAAGGAGAAAGTGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCAACTGTTCCATATAATGCTCCTCAAGGACCTGGGCCGAATGGAAAACAAAGAAAATCGAGTTTGGAATCACCGATCATGTTGTTGTCAGGTCATCAGAGTGCCATATATACGGTAAAGTTTAATCCAGATGGAAACGTGATTGCATCTGGGTCTCATGACAAGGAAATTTTTCTATGGAACGTACATGGAGATTGCAAGAACTTTGTGGTTTTGAGAGGGCATAAGAATGCAGTTCTAGATCTTCATTGGACCATTGATGGATCTCAGATAGTTAGTGCCAGCCCCGATAAAACGTTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAGCACTCCTCCTTTGTCAATTCATGTTGTCCCACGAGAAGAGGTCCACCACTAATTGTCAGCGGATCGGACGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGCGCCATTCAAACATTCCCAGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGATAAGATTTTCACAGGTGGAATTGACAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCATATCTCCTCACTAATGGAATGGACTGCAAGCTTTGCATATGGGACATGCGTCCGTATGCGCCTCAAAACCGATGTGTGAAGATATTCGAAGGGCACCAACATAACTTTGAAAAGAACCTGCTGAAATGTAGTTGGTCTGCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATACTGTATAAGCTTCCTGGGCATACTGGATCCGTCAATGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAATCTACATTCAAAATCGTCAATCTGTACTGTAAGTGTATTGTCAATTACTTAATTGCTTCTATTTTCCGAATGTTAGTGACCCACAAAAAATGATGGTCGTTTTTAGACGTTGGATTCAAGGTGACATTTCTGAGTACTGTAGTAAACGTCTTCATGATATAAACTTGCAATTTGAACTTTGTTTCCATGTCGTGATTTTGTGGGATTGCGTCGTTTTAGGCTTTTTCGCAGCCACTGTTTTCTACAGTTGTGAGTTAGTTATAATAGTTTGTAGTTACTCGAATTTGTGGGGTTCATAATAGTTTTTGGAGTTAAGGTGCAGATTATTTTAGTATGTATTCAGAGTGTAAATTATTTTTCGACGAGTAGGTTACAATACTAAAATAAGTTATTATGTTATATGAATTGAATTGAGATGTATAATTTGTTGTATATTTTTTCTTCTTTGGGATTTCTTATTCTATTTTCCAGTTTAAGTTTATTAATAACTCATTTTTTTCATATATACATAAATTTCTTGCTTTAAACTTTGATGAAACCGATGAAATAAGTTGTATAAAATGTTAGATTGATGTCAAAGCGTGCTTAGCTCAACGGTGATTGACATAACCTTTCATCCTAGAGATGTAAGGTTTGAATCCTTTTACTCTCCATCGTTGTACTAAAAAAGTGTTTGGATTGACTAGAAAAAAATGTTTTTACTTAGGGCTAAATACACCTTTTGTCCTTGAGATTTGGGGTTAGTATCTATTTGGTCTCTAAAATTTTGGAATGGACACTTTTAGTGCCCGAAGTTTGAAACAAAGTTCTAAATGGTTCCTAAACTTGGTTAACTGTTAGTTGACTAATGTAATGTATTTCTCTGTCTTCTCCACCTCAAACCTCTCTGCCCCTTGGTTCTTTGTGCTTCTCTTGCTGGGGGGTTGGTGCTCCATCTGAAAGTAAGCAATGACGATGATGAAACTTTACATCAGCCACCAAGTACTACACAGAGATATATTCAAAACCTTCCATTCATCTTTCTAGTCCTGAAGTCACAGCGACCGCGTTTTAGATATGGAAACAGGGGCTTCAAGTGGAAAGTTTAGAATTTTTTTAAATCTTTTAAGGATTAAAAGTGCCTATTTTGAAACTTCATGATCAAATAGACTCTAACCCCAAATTTTAGAGACCAAAAGTGTATTTTCCTCTTTTACTTGTGTGTTTGGTTGAGTTTTCTCAAATGTGCTTTTACACAAGTTTGTTTGATTTACAACTCCAAAGGTTTTCTTTTTCTTTCAAATTCTTTTATTAATGTCAAATTACTATAAACAAAAATATTAAATACGATGAGTTGGTCAACAGAGTTGGTCATATATGTGGGTCGCCTGAGTGATTAGTTGGCAGCAGTTTGAGGTGGTCGTCGCTGAAATTGTGTATTAGAGGCAGTCCTTCGATGGAGCTGATTGAGTGATTGTTGGAGTTGGCCTCCTTAGGTGGAGTTGAACATTAGATTTGGAGGGAGTGAGAGTTGGTTATTTGAACTATGGAGTTCACTTTCAAGAGTGTCTAACAAGAACTCGAGATGATTAGTTGGTCGGATTAAGGATATATTAGATACTTTATAAAGCTAAAAAATTTAATGGACATAAAATTGAAAGTTTAAAACTCTGTTAGACATTTTTTTAAAAAATTTGGAGACCTATAAGACAGTTTGAAAGTTGAAAGACCAAATAAACCCAAACTCAAAAATCAAAAGGGACTAAACCTAAAATTTTCCCTTTTCAACTACATCGGTTAACTATCTCACTTGCTAAACTGTTATATTTTGTATAGAGCATATGATTTGAAACAATCTCGTCTCCCAAATACGGATTCTTGGAGGCTTTATAATTTTGCTTTGAAGTTCGTATGAATGCATTTGATTGTTTTGCCAACTTCAACTAGAATTTTAGAAAATAGGTTATTGAAGATGGACTACGAAAAATAGAATTGTTAAGGTTTATGATAATGTGGTTTCATTAGAACCCCTCCGAACCGTACATGGGTGCGGTTGTGGTGTTCATCGTGGTGGACATGGCACTGGCAGACGAGTAGGGCATGGTCGAGGGAACAACACCAAGAACATCACCAATGTCGATGTCATTTGCAAAACAATGATTATTGCACCATGA

mRNA sequence

ATGCAAGTCCCTTCAGAAGGAGAAAGTGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCAACTGTTCCATATAATGCTCCTCAAGGACCTGGGCCGAATGGAAAACAAAGAAAATCGAGTTTGGAATCACCGATCATGTTGTTGTCAGGTCATCAGAGTGCCATATATACGGTAAAGTTTAATCCAGATGGAAACGTGATTGCATCTGGGTCTCATGACAAGGAAATTTTTCTATGGAACGTACATGGAGATTGCAAGAACTTTGTGGTTTTGAGAGGGCATAAGAATGCAGTTCTAGATCTTCATTGGACCATTGATGGATCTCAGATAGTTAGTGCCAGCCCCGATAAAACGTTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAGCACTCCTCCTTTGTCAATTCATGTTGTCCCACGAGAAGAGGTCCACCACTAATTGTCAGCGGATCGGACGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGCGCCATTCAAACATTCCCAGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGATAAGATTTTCACAGGTGGAATTGACAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCATATCTCCTCACTAATGGAATGGACTGCAAGCTTTGCATATGGGACATGCGTCCGTATGCGCCTCAAAACCGATGTGTGAAGATATTCGAAGGGCACCAACATAACTTTGAAAAGAACCTGCTGAAATGTAGTTGGTCTGCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATACTGTATAAGCTTCCTGGGCATACTGGATCCGTCAATGAGTGTGTCTTCCATCCCAAACCCCTCCGAACCGTACATGGGTGCGGTTGTGGTGTTCATCGTGGTGGACATGGCACTGGCAGACGAGTAGGGCATGGTCGAGGGAACAACACCAAGAACATCACCAATGTCGATGTCATTTGCAAAACAATGATTATTGCACCATGA

Coding sequence (CDS)

ATGCAAGTCCCTTCAGAAGGAGAAAGTGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCAACTGTTCCATATAATGCTCCTCAAGGACCTGGGCCGAATGGAAAACAAAGAAAATCGAGTTTGGAATCACCGATCATGTTGTTGTCAGGTCATCAGAGTGCCATATATACGGTAAAGTTTAATCCAGATGGAAACGTGATTGCATCTGGGTCTCATGACAAGGAAATTTTTCTATGGAACGTACATGGAGATTGCAAGAACTTTGTGGTTTTGAGAGGGCATAAGAATGCAGTTCTAGATCTTCATTGGACCATTGATGGATCTCAGATAGTTAGTGCCAGCCCCGATAAAACGTTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAGCACTCCTCCTTTGTCAATTCATGTTGTCCCACGAGAAGAGGTCCACCACTAATTGTCAGCGGATCGGACGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGCGCCATTCAAACATTCCCAGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGATAAGATTTTCACAGGTGGAATTGACAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCATATCTCCTCACTAATGGAATGGACTGCAAGCTTTGCATATGGGACATGCGTCCGTATGCGCCTCAAAACCGATGTGTGAAGATATTCGAAGGGCACCAACATAACTTTGAAAAGAACCTGCTGAAATGTAGTTGGTCTGCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATACTGTATAAGCTTCCTGGGCATACTGGATCCGTCAATGAGTGTGTCTTCCATCCCAAACCCCTCCGAACCGTACATGGGTGCGGTTGTGGTGTTCATCGTGGTGGACATGGCACTGGCAGACGAGTAGGGCATGGTCGAGGGAACAACACCAAGAACATCACCAATGTCGATGTCATTTGCAAAACAATGATTATTGCACCATGA

Protein sequence

MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPKPLRTVHGCGCGVHRGGHGTGRRVGHGRGNNTKNITNVDVICKTMIIAP
Homology
[Close]
BLAST of CmUC11G217130 vs. NCBI nr
Match: XP_008446018.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA0034179.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa] >TYK15740.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 686.4 bits (1770), Expect = 1.4e-193
Identity = 319/325 (98.15%), Postives = 323/325 (99.38%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPSEGE+ALATVGPRPMEWSTVPYN PQGPGPNGKQR SSLESPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWNVHGDCKNF+VLRGHKNAVLDLHWT+DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP 326
           DTTSRRILYKLPGHTGSVNECVFHP
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHP 325

[Close]
BLAST of CmUC11G217130 vs. NCBI nr
Match: XP_004135336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 hypothetical protein Csa_008253 [Cucumis sativus])

HSP 1 Score: 682.9 bits (1761), Expect = 1.5e-192
Identity = 321/336 (95.54%), Postives = 328/336 (97.62%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPSEGE+ALATVGPRPMEWSTVPYN PQGPGPN KQR SSLESPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWNVHGDCKNF+VLRGHKNAVLDLHWT+DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP-KPLRTVHGCG 336
           DTTSRRILYKLPGHTGSVNECVFHP +P+  V  CG
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPI--VASCG 334

[Close]
BLAST of CmUC11G217130 vs. NCBI nr
Match: XP_038877892.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Benincasa hispida])

HSP 1 Score: 681.8 bits (1758), Expect = 3.4e-192
Identity = 318/325 (97.85%), Postives = 323/325 (99.38%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPSEGE+ALATVGPRPMEWSTVPYNAPQG GPNGKQR+SSLESPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGHGPNGKQRRSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWNV GDCKNF+VLRGHKNAVLDLHWTIDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVRGDCKNFMVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVE+GKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVESGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP 326
           DTTSRRILYKLPGHTGSVNECVFHP
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHP 325

[Close]
BLAST of CmUC11G217130 vs. NCBI nr
Match: XP_022945717.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG6573599.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012682.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 674.5 bits (1739), Expect = 5.4e-190
Identity = 313/325 (96.31%), Postives = 320/325 (98.46%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPS GE+ALATVGPRPMEWSTVPYNAPQGPGPNGKQR SSLESPIMLL+GHQSAIYT+
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN++VLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP 326
           DTTSRRILYKLPGHTGSVNECVFHP
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHP 325

[Close]
BLAST of CmUC11G217130 vs. NCBI nr
Match: XP_022966914.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima])

HSP 1 Score: 674.5 bits (1739), Expect = 5.4e-190
Identity = 313/325 (96.31%), Postives = 320/325 (98.46%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPS GE+ALATVGPRPMEWSTVPYNAPQGPGPNGKQR SSLESPIMLL+GHQSAIYT+
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN++VLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP 326
           DTTSRRILYKLPGHTGSVNECVFHP
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHP 325

[Close]
BLAST of CmUC11G217130 vs. ExPASy Swiss-Prot
Match: Q96DI7 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 3.4e-115
Identity = 176/290 (60.69%), Postives = 232/290 (80.00%), Query Frame = 0 

Query: 36  GKQRKSSLESPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRG 95
           G  R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 107

Query: 96  HKNAVLDLHWTIDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHP 326
           LL+CSWS DGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE  FHP
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHP 337

[Close]
BLAST of CmUC11G217130 vs. ExPASy Swiss-Prot
Match: Q6PE01 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 5.9e-115
Identity = 174/290 (60.00%), Postives = 232/290 (80.00%), Query Frame = 0 

Query: 36  GKQRKSSLESPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRG 95
           G  R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTIDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 288

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHP 326
           LL+CSWS DGSK+ AGS+DR VY+WDTTSRR+LYKLPGH GS+NE  FHP
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHP 338

[Close]
BLAST of CmUC11G217130 vs. ExPASy Swiss-Prot
Match: Q2HJH6 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 7.7e-115
Identity = 175/290 (60.34%), Postives = 232/290 (80.00%), Query Frame = 0 

Query: 36  GKQRKSSLESPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRG 95
           G  R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTIDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCV+IF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKN 288

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHP 326
           LL+CSWS DGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE  FHP
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHP 338

[Close]
BLAST of CmUC11G217130 vs. ExPASy Swiss-Prot
Match: Q5RF51 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 3.2e-113
Identity = 174/290 (60.00%), Postives = 231/290 (79.66%), Query Frame = 0 

Query: 36  GKQRKSSLESPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRG 95
           G  R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKG 107

Query: 96  HKNAVLDLHWTIDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           +  AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 YSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHP 326
           LL+CSWS DGSK+ AGS+DR V +WDTTSRRILYKLPGH GS+NE  FHP
Sbjct: 288 LLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHP 337

[Close]
BLAST of CmUC11G217130 vs. ExPASy Swiss-Prot
Match: Q55AR8 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX=44689 GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.4e-100
Identity = 162/291 (55.67%), Postives = 211/291 (72.51%), Query Frame = 0 

Query: 36  GKQRKSSLESPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRG 95
           G +R S LE PIM L GH+  IY+ KFN  G  +ASG  DKEIFLWNV+G+C N+ VL+G
Sbjct: 44  GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103

Query: 96  HKNAVLDLHWTIDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           HK  +L+LHW+ D ++I +A  DK++  WD   G+ IK++ EHS  VNSCCP RRGPPL+
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGE- 215
            SGSDD +A+++D R +G+   F  KY +T+V FSDASD++ TGGIDN ++VWD+R  E 
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223

Query: 216 VMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEK 275
            + TL  HQD IT   +S DG+YLL+N MD    IWD+RPYAP NR +K F G Q+NFEK
Sbjct: 224 PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEK 283

Query: 276 NLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHP 326
           NL+K SWS DG ++  GSSDR VYIWDT ++++ Y LPGH+G+VNE  FHP
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHP 334

[Close]
BLAST of CmUC11G217130 vs. ExPASy TrEMBL
Match: A0A5A7SYI1 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002400 PE=4 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 6.6e-194
Identity = 319/325 (98.15%), Postives = 323/325 (99.38%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPSEGE+ALATVGPRPMEWSTVPYN PQGPGPNGKQR SSLESPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWNVHGDCKNF+VLRGHKNAVLDLHWT+DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP 326
           DTTSRRILYKLPGHTGSVNECVFHP
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHP 325

[Close]
BLAST of CmUC11G217130 vs. ExPASy TrEMBL
Match: A0A1S3BDK5 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC103488871 PE=4 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 6.6e-194
Identity = 319/325 (98.15%), Postives = 323/325 (99.38%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPSEGE+ALATVGPRPMEWSTVPYN PQGPGPNGKQR SSLESPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWNVHGDCKNF+VLRGHKNAVLDLHWT+DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP 326
           DTTSRRILYKLPGHTGSVNECVFHP
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHP 325

[Close]
BLAST of CmUC11G217130 vs. ExPASy TrEMBL
Match: A0A0A0KTB1 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G588760 PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 7.3e-193
Identity = 321/336 (95.54%), Postives = 328/336 (97.62%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPSEGE+ALATVGPRPMEWSTVPYN PQGPGPN KQR SSLESPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWNVHGDCKNF+VLRGHKNAVLDLHWT+DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP-KPLRTVHGCG 336
           DTTSRRILYKLPGHTGSVNECVFHP +P+  V  CG
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPI--VASCG 334

[Close]
BLAST of CmUC11G217130 vs. ExPASy TrEMBL
Match: A0A6J1HV60 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466479 PE=4 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 2.6e-190
Identity = 313/325 (96.31%), Postives = 320/325 (98.46%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPS GE+ALATVGPRPMEWSTVPYNAPQGPGPNGKQR SSLESPIMLL+GHQSAIYT+
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN++VLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP 326
           DTTSRRILYKLPGHTGSVNECVFHP
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHP 325

[Close]
BLAST of CmUC11G217130 vs. ExPASy TrEMBL
Match: A0A6J1G1Q0 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111449859 PE=4 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 2.6e-190
Identity = 313/325 (96.31%), Postives = 320/325 (98.46%), Query Frame = 0 

Query: 1   MQVPSEGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTV 60
           MQVPS GE+ALATVGPRPMEWSTVPYNAPQGPGPNGKQR SSLESPIMLL+GHQSAIYT+
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN++VLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHP 326
           DTTSRRILYKLPGHTGSVNECVFHP
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHP 325

[Close]
BLAST of CmUC11G217130 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 615.5 bits (1586), Expect = 2.7e-176
Identity = 281/320 (87.81%), Postives = 302/320 (94.38%), Query Frame = 0 

Query: 6   EGESALATVGPRPMEWSTVPYNAPQGPGPNGKQRKSSLESPIMLLSGHQSAIYTVKFNPD 65
           E E+AL+  GPRPMEWSTVP++A QGPGPNGK R SSLE+PIMLLSGH SA+YT+KFNP 
Sbjct: 7   ENETALS--GPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPA 66

Query: 66  GNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDGSQIVSASPDKTLRAWD 125
           G +IASGSHD+EIFLW VHGDCKNF+VL+GHKNA+LDLHWT DGSQIVSASPDKT+RAWD
Sbjct: 67  GTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWD 126

Query: 126 VETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 185
           VETGKQIKKMAEHSSFVNSCCPTRRGPPLI+SGSDDGTAKLWDMRQRGAIQTFPDKYQIT
Sbjct: 127 VETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQIT 186

Query: 186 AVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDC 245
           AVSFSDA+DKIFTGG+DNDVKVWDLRKGE  MTL+GHQD ITGM LSPDGSYLLTNGMD 
Sbjct: 187 AVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDN 246

Query: 246 KLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSR 305
           KLC+WDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DG+KVTAGSSDRMV+IWDTTSR
Sbjct: 247 KLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSR 306

Query: 306 RILYKLPGHTGSVNECVFHP 326
           R +YKLPGHTGSVNECVFHP
Sbjct: 307 RTIYKLPGHTGSVNECVFHP 324

[Close]
BLAST of CmUC11G217130 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 154.1 bits (388), Expect = 2.3e-37
Identity = 86/282 (30.50%), Postives = 145/282 (51.42%), Query Frame = 0 

Query: 50  LSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNVH----GDCKNFVVLRGHKNAVLDLHW 109
           L+ H  A+ +VKF+ DG ++AS S DK I  + ++       +      GH+N + D+ +
Sbjct: 20  LTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAF 79

Query: 110 TIDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAK 169
           + D   IVSAS DKTL+ WDVETG  IK +  H+++   C        +IVSGS D T +
Sbjct: 80  SSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYA-FCVNFNPQSNMIVSGSFDETVR 139

Query: 170 LWDMRQRGAIQTFP-DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQ 229
           +WD+     ++  P     +TAV F+     I +   D   ++WD   G  + TL     
Sbjct: 140 IWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDEN 199

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSA 289
             ++ ++ SP+G ++L   +D  L +W++       + +K + GH  N +  +       
Sbjct: 200 PPVSFVRFSPNGKFILVGTLDNTLRLWNI----SSAKFLKTYTGHV-NAQYCISSAFSVT 259

Query: 290 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHP 326
           +G ++ +GS D  V++W+  S+++L KL GHT +V     HP
Sbjct: 260 NGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHP 295

[Close]
BLAST of CmUC11G217130 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-29
Identity = 79/283 (27.92%), Postives = 124/283 (43.82%), Query Frame = 0 

Query: 49  LLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTID 108
           +L GH+ A+   +FN DGN   +   D+ I LWN H         + H   V D+H T D
Sbjct: 13  ILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGIL-IKTYKSHGREVRDVHVTSD 72

Query: 109 GSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWD 168
            ++  S   D+ +  WDV TG+ I+K   H   VN+         ++VS   D + ++WD
Sbjct: 73  NAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNA-VKFNDSSSVVVSAGFDRSLRVWD 132

Query: 169 MRQRGA-----IQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 228
            R         I TF D    T +S      +I  G +D  V+ +D+R G  M    G  
Sbjct: 133 CRSHSVEPVQIIDTFLD----TVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMSDNLGQP 192

Query: 229 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSA 288
             +  + +S DG+ +L   +D  L + D          +++++GH     K    C  + 
Sbjct: 193 --VNCISISNDGNCVLAGCLDSTLRLLD----RTTGELLQVYKGHISKSFKT--DCCLTN 252

Query: 289 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPK 327
             + V  GS D +V+ WD    ++L K   H   V    +HPK
Sbjct: 253 SDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPK 281

[Close]
BLAST of CmUC11G217130 vs. TAIR 10
Match: AT5G52820.1 (WD-40 repeat family protein / notchless protein, putative )

HSP 1 Score: 116.7 bits (291), Expect = 4.0e-26
Identity = 80/285 (28.07%), Postives = 136/285 (47.72%), Query Frame = 0 

Query: 50  LSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDG 109
           ++GH  A+  V F+PDG  +ASGS D  + LW+++ +   F   +GHKN VL + W+ DG
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF-TCKGHKNWVLTVAWSPDG 164

Query: 110 SQIVSASPDKTLRAWDVETGK-QIKKMAEHSSFVN--SCCPTRRGPPL--IVSGSDDGTA 169
             +VS S    +  W+ + G+ +   +  H  ++   S  P     P    V+ S DG A
Sbjct: 165 KHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDA 224

Query: 170 KLWDMR-QRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 229
           ++WD+  ++  I        +T V +      I+TG  D  +K+W+  +G+++  L+GH 
Sbjct: 225 RIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQDCTIKMWETTQGKLIRELKGHG 284

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDM--RPYAPQNRCVKIFEGHQHNFEKNLLKCSW 289
             I  + LS +  Y+L  G       +D   R Y P     K  E  ++N  K       
Sbjct: 285 HWINSLALSTE--YVLRTG------AFDHTGRQYPPNEEKQKALE--RYNKTK------- 344

Query: 290 SADGSKVTAGSSDRMVYIWD-TTSRRILYKLPGHTGSVNECVFHP 326
                ++ +GS D  +++W+ + S++   +L GH   VN   F P
Sbjct: 345 GDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSP 370

[Close]
BLAST of CmUC11G217130 vs. TAIR 10
Match: AT1G10580.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-25
Identity = 70/289 (24.22%), Postives = 129/289 (44.64%), Query Frame = 0 

Query: 51  SGHQSAIYTVKFNP-DGNVIASGSHDKEIFLWNVHGDCKNFVVLRGHKNAVLDLHWTIDG 110
           SGH   +  ++F P  G+++ S   D ++ +W+V+   K      GH  AV D+ ++ DG
Sbjct: 279 SGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDG 338

Query: 111 SQIVSASPDKTLRAWDVETGKQIKKMAEHS-SFVNSCCPTRRGPPLIVSGSDDGTAKLWD 170
           S+ ++A  DK ++ WD ETG+ I   +     +V    P      ++++G  D     WD
Sbjct: 339 SKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 398

Query: 171 MRQRGAIQTFPDKY-QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQDMI 230
           +      Q +      +  ++F D + +  T   D  ++VW+     V+  + + H   +
Sbjct: 399 INTGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 458

Query: 231 TGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGS 290
             + + P+G++L    +D ++ I+  R     N+  K F G  H       + ++S DG 
Sbjct: 459 PSISVHPNGNWLAAQSLDNQILIYSTRERFQLNK-KKRFAG--HIVAGYACQVNFSPDGR 518

Query: 291 KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPKPLRTVHGCG 336
            V +G  +   + WD  S ++   L  H G      +HP     V  CG
Sbjct: 519 FVMSGDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEWHPLEQSKVATCG 564

The following BLAST results are available for this feature:
BLAST of CmUC11G217130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446018.11.4e-19398.15PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA... [more]
XP_004135336.11.5e-19295.54U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 ... [more]
XP_038877892.13.4e-19297.85U5 small nuclear ribonucleoprotein 40 kDa protein [Benincasa hispida][more]
XP_022945717.15.4e-19096.31U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG65735... [more]
XP_022966914.15.4e-19096.31U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima][more]
BLAST of CmUC11G217130 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q96DI73.4e-11560.69U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNR... [more]
Q6PE015.9e-11560.00U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Sn... [more]
Q2HJH67.7e-11560.34U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP... [more]
Q5RF513.2e-11360.00U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNR... [more]
Q55AR81.4e-10055.67U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX... [more]
BLAST of CmUC11G217130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SYI16.6e-19498.15U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX... [more]
A0A1S3BDK56.6e-19498.15U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A0A0KTB17.3e-19395.54WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G... [more]
A0A6J1HV602.6e-19096.31U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1G1Q02.6e-19096.31U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 ... [more]
BLAST of CmUC11G217130 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43770.12.7e-17687.81Transducin/WD40 repeat-like superfamily protein [more]
AT3G49660.12.3e-3730.50Transducin/WD40 repeat-like superfamily protein [more]
AT5G64730.13.0e-2927.92Transducin/WD40 repeat-like superfamily protein [more]
AT5G52820.14.0e-2628.07WD-40 repeat family protein / notchless protein, putative [more]
AT1G10580.12.0e-2524.22Transducin/WD40 repeat-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 112..126
score: 37.9
coord: 155..169
score: 41.82
coord: 69..83
score: 35.64
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 86..125
e-value: 6.7E-7
score: 38.9
coord: 258..301
e-value: 1.3E-5
score: 34.7
coord: 43..82
e-value: 1.6E-9
score: 47.6
coord: 212..251
e-value: 1.6E-8
score: 44.3
coord: 128..168
e-value: 1.6E-7
score: 41.0
coord: 171..209
e-value: 3.2E-4
score: 30.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 214..251
e-value: 8.1E-6
score: 26.5
coord: 260..301
e-value: 1.6E-5
score: 25.5
coord: 89..125
e-value: 0.0024
score: 18.7
coord: 184..209
e-value: 0.0099
score: 16.7
coord: 46..82
e-value: 2.1E-7
score: 31.5
coord: 130..168
e-value: 4.6E-4
score: 20.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 184..218
score: 12.580379
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 280..310
score: 10.040596
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 219..253
score: 13.516088
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 50..83
score: 16.289801
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 93..134
score: 16.055872
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 135..177
score: 10.541869
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 42..335
e-value: 4.8E-116
score: 388.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availablePANTHERPTHR44006U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEINcoord: 33..326
NoneNo IPR availablePANTHERPTHR44006:SF1U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEINcoord: 33..326
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 219..253
score: 11.207411
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 50..83
score: 13.39558
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 93..130
score: 12.209223
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 177..214
score: 9.151057
NoneNo IPR availableCDDcd00200WD40coord: 50..325
e-value: 1.76043E-66
score: 210.269
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 288..302
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 69..83
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 112..126
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 155..169
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 196..210
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 47..331

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G217130.1CmUC11G217130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0071013 catalytic step 2 spliceosome
molecular_function GO:0005515 protein binding